Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01770 and RR42_RS01775 are separated by 458 nucleotides RR42_RS01775 and RR42_RS01780 are separated by 29 nucleotides
RR42_RS01770: RR42_RS01770 - hypothetical protein, at 402,483 to 403,292
_RS01770
RR42_RS01775: RR42_RS01775 - glutamate--cysteine ligase, at 403,751 to 405,046
_RS01775
RR42_RS01780: RR42_RS01780 - glutathione synthetase, at 405,076 to 406,029
_RS01780
Position (kb) 403
404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 403.323 kb on + strand at 403.323 kb on + strand at 403.323 kb on + strand at 403.323 kb on + strand at 403.323 kb on + strand at 403.324 kb on + strand at 403.454 kb on + strand at 403.454 kb on + strand at 403.454 kb on + strand at 403.454 kb on + strand at 403.454 kb on + strand at 403.454 kb on + strand at 403.455 kb on - strand at 403.455 kb on - strand at 403.455 kb on - strand at 403.455 kb on - strand at 403.455 kb on - strand at 403.595 kb on + strand at 403.595 kb on + strand at 403.595 kb on + strand at 403.596 kb on - strand at 403.611 kb on - strand at 403.632 kb on - strand at 403.632 kb on - strand at 403.667 kb on + strand at 403.667 kb on + strand at 403.668 kb on - strand at 403.673 kb on + strand at 403.673 kb on + strand at 403.673 kb on + strand at 403.673 kb on + strand at 403.674 kb on - strand at 403.674 kb on - strand at 403.674 kb on - strand at 403.674 kb on - strand at 403.741 kb on + strand at 403.741 kb on + strand at 403.750 kb on + strand at 403.750 kb on + strand at 403.751 kb on - strand at 403.864 kb on + strand at 403.864 kb on + strand at 403.864 kb on + strand at 403.864 kb on + strand at 403.864 kb on + strand at 403.865 kb on - strand at 404.337 kb on - strand, within RR42_RS01775 at 404.337 kb on - strand, within RR42_RS01775 at 404.562 kb on - strand, within RR42_RS01775 at 404.591 kb on + strand, within RR42_RS01775 at 404.591 kb on + strand, within RR42_RS01775 at 404.592 kb on - strand, within RR42_RS01775 at 404.622 kb on - strand, within RR42_RS01775 at 404.622 kb on - strand, within RR42_RS01775 at 404.795 kb on + strand, within RR42_RS01775 at 404.795 kb on + strand, within RR42_RS01775 at 404.796 kb on - strand, within RR42_RS01775 at 404.829 kb on - strand, within RR42_RS01775 at 404.964 kb on - strand at 404.965 kb on + strand at 404.965 kb on + strand at 404.966 kb on - strand at 404.966 kb on - strand at 404.966 kb on - strand at 404.969 kb on + strand at 404.970 kb on - strand at 404.970 kb on - strand at 404.970 kb on - strand at 405.122 kb on - strand at 405.136 kb on + strand at 405.136 kb on + strand at 405.355 kb on + strand, within RR42_RS01780 at 405.356 kb on - strand, within RR42_RS01780 at 405.356 kb on - strand, within RR42_RS01780 at 405.472 kb on + strand, within RR42_RS01780 at 405.472 kb on + strand, within RR42_RS01780 at 405.473 kb on - strand, within RR42_RS01780 at 405.511 kb on - strand, within RR42_RS01780 at 405.511 kb on - strand, within RR42_RS01780 at 405.670 kb on + strand, within RR42_RS01780 at 405.671 kb on - strand, within RR42_RS01780 at 405.671 kb on - strand, within RR42_RS01780 at 405.671 kb on - strand, within RR42_RS01780 at 405.671 kb on - strand, within RR42_RS01780 at 405.672 kb on + strand, within RR42_RS01780 at 405.673 kb on - strand, within RR42_RS01780 at 405.673 kb on - strand, within RR42_RS01780 at 405.733 kb on + strand, within RR42_RS01780 at 405.748 kb on - strand, within RR42_RS01780 at 405.904 kb on + strand, within RR42_RS01780 at 405.905 kb on - strand, within RR42_RS01780 at 406.010 kb on + strand at 406.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 403,323 + -0.4 403,323 + +1.4 403,323 + -0.6 403,323 + +0.2 403,323 + -0.7 403,324 + -0.1 403,454 + -0.4 403,454 + +0.3 403,454 + -0.9 403,454 + -0.7 403,454 + -3.1 403,454 + +0.6 403,455 - -0.4 403,455 - +0.1 403,455 - -0.3 403,455 - +0.8 403,455 - -0.5 403,595 + -1.4 403,595 + +1.0 403,595 + -0.1 403,596 - +0.2 403,611 - -0.8 403,632 - +1.9 403,632 - -0.6 403,667 + +0.3 403,667 + +0.2 403,668 - +0.2 403,673 + -1.9 403,673 + -0.1 403,673 + +0.0 403,673 + +0.2 403,674 - +1.4 403,674 - -1.3 403,674 - -0.2 403,674 - +1.4 403,741 + -0.1 403,741 + +0.4 403,750 + -0.9 403,750 + -0.7 403,751 - -4.4 403,864 + -0.3 403,864 + -3.1 403,864 + -1.3 403,864 + -1.6 403,864 + -1.4 403,865 - +0.7 404,337 - RR42_RS01775 0.45 -1.4 404,337 - RR42_RS01775 0.45 -0.8 404,562 - RR42_RS01775 0.63 -1.5 404,591 + RR42_RS01775 0.65 -0.8 404,591 + RR42_RS01775 0.65 -1.1 404,592 - RR42_RS01775 0.65 -0.9 404,622 - RR42_RS01775 0.67 -2.2 404,622 - RR42_RS01775 0.67 -4.2 404,795 + RR42_RS01775 0.81 -1.1 404,795 + RR42_RS01775 0.81 -2.4 404,796 - RR42_RS01775 0.81 -0.8 404,829 - RR42_RS01775 0.83 -1.6 404,964 - -1.3 404,965 + -1.1 404,965 + -1.0 404,966 - -2.0 404,966 - -1.1 404,966 - +0.4 404,969 + -3.0 404,970 - -0.6 404,970 - -2.1 404,970 - +0.7 405,122 - -0.1 405,136 + -1.6 405,136 + -1.1 405,355 + RR42_RS01780 0.29 -1.4 405,356 - RR42_RS01780 0.29 -1.8 405,356 - RR42_RS01780 0.29 -2.4 405,472 + RR42_RS01780 0.42 -2.8 405,472 + RR42_RS01780 0.42 -2.6 405,473 - RR42_RS01780 0.42 -0.1 405,511 - RR42_RS01780 0.46 -1.6 405,511 - RR42_RS01780 0.46 -0.5 405,670 + RR42_RS01780 0.62 -2.1 405,671 - RR42_RS01780 0.62 -0.6 405,671 - RR42_RS01780 0.62 -0.8 405,671 - RR42_RS01780 0.62 -1.1 405,671 - RR42_RS01780 0.62 -0.9 405,672 + RR42_RS01780 0.62 -0.0 405,673 - RR42_RS01780 0.63 -0.8 405,673 - RR42_RS01780 0.63 -1.1 405,733 + RR42_RS01780 0.69 -2.3 405,748 - RR42_RS01780 0.70 -1.3 405,904 + RR42_RS01780 0.87 +0.1 405,905 - RR42_RS01780 0.87 -3.3 406,010 + -0.3 406,011 - +1.4
Or see this region's nucleotide sequence