Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01750 and RR42_RS01755 are separated by 65 nucleotides RR42_RS01755 and RR42_RS01760 are separated by 31 nucleotides RR42_RS01760 and RR42_RS01765 are separated by 139 nucleotides RR42_RS01765 and RR42_RS01770 are separated by 29 nucleotides
RR42_RS01750: RR42_RS01750 - hypothetical protein, at 399,129 to 399,938
_RS01750
RR42_RS01755: RR42_RS01755 - nitrogen regulatory protein P-II 1, at 400,004 to 400,342
_RS01755
RR42_RS01760: RR42_RS01760 - ammonia channel protein, at 400,374 to 401,909
_RS01760
RR42_RS01765: RR42_RS01765 - transposase, at 402,049 to 402,453
_RS01765
RR42_RS01770: RR42_RS01770 - hypothetical protein, at 402,483 to 403,292
_RS01770
Position (kb) 400
401
402 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 399.381 kb on + strand, within RR42_RS01750 at 399.381 kb on + strand, within RR42_RS01750 at 399.381 kb on + strand, within RR42_RS01750 at 399.381 kb on + strand, within RR42_RS01750 at 399.381 kb on + strand, within RR42_RS01750 at 399.382 kb on - strand, within RR42_RS01750 at 399.382 kb on - strand, within RR42_RS01750 at 399.382 kb on - strand, within RR42_RS01750 at 399.407 kb on + strand, within RR42_RS01750 at 399.407 kb on + strand, within RR42_RS01750 at 399.408 kb on - strand, within RR42_RS01750 at 399.408 kb on - strand, within RR42_RS01750 at 399.462 kb on + strand, within RR42_RS01750 at 399.462 kb on + strand, within RR42_RS01750 at 399.462 kb on + strand, within RR42_RS01750 at 399.463 kb on - strand, within RR42_RS01750 at 399.510 kb on + strand, within RR42_RS01750 at 399.511 kb on - strand, within RR42_RS01750 at 399.511 kb on - strand, within RR42_RS01750 at 399.531 kb on + strand, within RR42_RS01750 at 399.532 kb on - strand, within RR42_RS01750 at 399.532 kb on - strand, within RR42_RS01750 at 399.532 kb on - strand, within RR42_RS01750 at 399.532 kb on - strand, within RR42_RS01750 at 399.534 kb on + strand, within RR42_RS01750 at 399.535 kb on - strand, within RR42_RS01750 at 399.535 kb on - strand, within RR42_RS01750 at 399.535 kb on - strand, within RR42_RS01750 at 399.537 kb on + strand, within RR42_RS01750 at 399.550 kb on - strand, within RR42_RS01750 at 399.573 kb on + strand, within RR42_RS01750 at 399.574 kb on - strand, within RR42_RS01750 at 399.574 kb on - strand, within RR42_RS01750 at 399.588 kb on + strand, within RR42_RS01750 at 399.588 kb on + strand, within RR42_RS01750 at 399.588 kb on + strand, within RR42_RS01750 at 399.588 kb on + strand, within RR42_RS01750 at 399.588 kb on + strand, within RR42_RS01750 at 399.588 kb on + strand, within RR42_RS01750 at 399.589 kb on - strand, within RR42_RS01750 at 399.589 kb on - strand, within RR42_RS01750 at 399.625 kb on - strand, within RR42_RS01750 at 399.669 kb on + strand, within RR42_RS01750 at 399.669 kb on + strand, within RR42_RS01750 at 399.669 kb on + strand, within RR42_RS01750 at 399.669 kb on + strand, within RR42_RS01750 at 399.669 kb on + strand, within RR42_RS01750 at 399.675 kb on + strand, within RR42_RS01750 at 399.676 kb on - strand, within RR42_RS01750 at 399.676 kb on - strand, within RR42_RS01750 at 399.676 kb on - strand, within RR42_RS01750 at 399.676 kb on - strand, within RR42_RS01750 at 399.678 kb on + strand, within RR42_RS01750 at 399.678 kb on + strand, within RR42_RS01750 at 399.679 kb on - strand, within RR42_RS01750 at 399.777 kb on + strand, within RR42_RS01750 at 399.778 kb on - strand, within RR42_RS01750 at 399.778 kb on - strand, within RR42_RS01750 at 399.840 kb on + strand, within RR42_RS01750 at 399.840 kb on + strand, within RR42_RS01750 at 399.841 kb on - strand, within RR42_RS01750 at 399.842 kb on + strand, within RR42_RS01750 at 399.843 kb on - strand, within RR42_RS01750 at 399.843 kb on - strand, within RR42_RS01750 at 399.872 kb on + strand at 399.937 kb on - strand at 400.155 kb on - strand, within RR42_RS01755 at 400.155 kb on - strand, within RR42_RS01755 at 400.155 kb on - strand, within RR42_RS01755 at 400.155 kb on - strand, within RR42_RS01755 at 400.616 kb on + strand, within RR42_RS01760 at 400.683 kb on + strand, within RR42_RS01760 at 400.683 kb on + strand, within RR42_RS01760 at 400.773 kb on + strand, within RR42_RS01760 at 400.773 kb on + strand, within RR42_RS01760 at 400.773 kb on + strand, within RR42_RS01760 at 400.774 kb on - strand, within RR42_RS01760 at 400.774 kb on - strand, within RR42_RS01760 at 400.774 kb on - strand, within RR42_RS01760 at 400.779 kb on + strand, within RR42_RS01760 at 400.905 kb on + strand, within RR42_RS01760 at 400.905 kb on + strand, within RR42_RS01760 at 400.905 kb on + strand, within RR42_RS01760 at 400.905 kb on + strand, within RR42_RS01760 at 400.906 kb on - strand, within RR42_RS01760 at 400.906 kb on - strand, within RR42_RS01760 at 400.938 kb on - strand, within RR42_RS01760 at 401.025 kb on + strand, within RR42_RS01760 at 401.026 kb on - strand, within RR42_RS01760 at 401.073 kb on + strand, within RR42_RS01760 at 401.074 kb on - strand, within RR42_RS01760 at 401.074 kb on - strand, within RR42_RS01760 at 401.561 kb on - strand, within RR42_RS01760 at 401.688 kb on - strand, within RR42_RS01760 at 401.691 kb on + strand, within RR42_RS01760 at 401.691 kb on + strand, within RR42_RS01760 at 401.691 kb on + strand, within RR42_RS01760 at 401.691 kb on + strand, within RR42_RS01760 at 401.691 kb on + strand, within RR42_RS01760 at 401.692 kb on - strand, within RR42_RS01760 at 401.692 kb on - strand, within RR42_RS01760 at 401.692 kb on - strand, within RR42_RS01760 at 401.692 kb on - strand, within RR42_RS01760 at 401.692 kb on - strand, within RR42_RS01760 at 401.692 kb on - strand, within RR42_RS01760 at 401.697 kb on + strand, within RR42_RS01760 at 401.697 kb on + strand, within RR42_RS01760 at 401.697 kb on + strand, within RR42_RS01760 at 401.697 kb on + strand, within RR42_RS01760 at 401.698 kb on - strand, within RR42_RS01760 at 401.698 kb on - strand, within RR42_RS01760 at 401.724 kb on + strand, within RR42_RS01760 at 401.724 kb on + strand, within RR42_RS01760 at 401.725 kb on - strand, within RR42_RS01760 at 401.771 kb on + strand at 401.771 kb on + strand at 401.772 kb on - strand at 401.772 kb on - strand at 401.823 kb on - strand at 401.899 kb on - strand at 401.899 kb on - strand at 402.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 399,381 + RR42_RS01750 0.31 -2.9 399,381 + RR42_RS01750 0.31 +1.2 399,381 + RR42_RS01750 0.31 -1.8 399,381 + RR42_RS01750 0.31 -0.3 399,381 + RR42_RS01750 0.31 -2.2 399,382 - RR42_RS01750 0.31 -3.4 399,382 - RR42_RS01750 0.31 -1.4 399,382 - RR42_RS01750 0.31 -0.6 399,407 + RR42_RS01750 0.34 -2.2 399,407 + RR42_RS01750 0.34 -1.3 399,408 - RR42_RS01750 0.34 -1.6 399,408 - RR42_RS01750 0.34 +0.7 399,462 + RR42_RS01750 0.41 -2.3 399,462 + RR42_RS01750 0.41 -1.8 399,462 + RR42_RS01750 0.41 -3.4 399,463 - RR42_RS01750 0.41 -0.6 399,510 + RR42_RS01750 0.47 -2.3 399,511 - RR42_RS01750 0.47 -1.3 399,511 - RR42_RS01750 0.47 -1.0 399,531 + RR42_RS01750 0.50 -0.6 399,532 - RR42_RS01750 0.50 -2.7 399,532 - RR42_RS01750 0.50 -0.8 399,532 - RR42_RS01750 0.50 -3.0 399,532 - RR42_RS01750 0.50 -1.7 399,534 + RR42_RS01750 0.50 -0.7 399,535 - RR42_RS01750 0.50 -1.7 399,535 - RR42_RS01750 0.50 +1.4 399,535 - RR42_RS01750 0.50 -1.3 399,537 + RR42_RS01750 0.50 -1.0 399,550 - RR42_RS01750 0.52 -1.8 399,573 + RR42_RS01750 0.55 -1.8 399,574 - RR42_RS01750 0.55 -1.6 399,574 - RR42_RS01750 0.55 -0.8 399,588 + RR42_RS01750 0.57 -1.4 399,588 + RR42_RS01750 0.57 -0.6 399,588 + RR42_RS01750 0.57 -0.6 399,588 + RR42_RS01750 0.57 -1.9 399,588 + RR42_RS01750 0.57 -1.3 399,588 + RR42_RS01750 0.57 -1.6 399,589 - RR42_RS01750 0.57 -2.8 399,589 - RR42_RS01750 0.57 -0.7 399,625 - RR42_RS01750 0.61 -1.3 399,669 + RR42_RS01750 0.67 -1.6 399,669 + RR42_RS01750 0.67 +0.0 399,669 + RR42_RS01750 0.67 -1.3 399,669 + RR42_RS01750 0.67 -1.6 399,669 + RR42_RS01750 0.67 -1.5 399,675 + RR42_RS01750 0.67 -1.1 399,676 - RR42_RS01750 0.68 -1.9 399,676 - RR42_RS01750 0.68 -1.6 399,676 - RR42_RS01750 0.68 -0.4 399,676 - RR42_RS01750 0.68 -1.1 399,678 + RR42_RS01750 0.68 -1.9 399,678 + RR42_RS01750 0.68 -1.4 399,679 - RR42_RS01750 0.68 -1.0 399,777 + RR42_RS01750 0.80 -0.7 399,778 - RR42_RS01750 0.80 -0.6 399,778 - RR42_RS01750 0.80 -0.9 399,840 + RR42_RS01750 0.88 -0.8 399,840 + RR42_RS01750 0.88 -2.8 399,841 - RR42_RS01750 0.88 +1.0 399,842 + RR42_RS01750 0.88 -2.3 399,843 - RR42_RS01750 0.88 -1.9 399,843 - RR42_RS01750 0.88 -0.1 399,872 + -1.3 399,937 - -2.1 400,155 - RR42_RS01755 0.45 -1.6 400,155 - RR42_RS01755 0.45 +0.1 400,155 - RR42_RS01755 0.45 +1.4 400,155 - RR42_RS01755 0.45 -3.9 400,616 + RR42_RS01760 0.16 -0.6 400,683 + RR42_RS01760 0.20 -3.1 400,683 + RR42_RS01760 0.20 -1.3 400,773 + RR42_RS01760 0.26 -1.7 400,773 + RR42_RS01760 0.26 -1.3 400,773 + RR42_RS01760 0.26 -0.7 400,774 - RR42_RS01760 0.26 -1.6 400,774 - RR42_RS01760 0.26 -1.3 400,774 - RR42_RS01760 0.26 -0.9 400,779 + RR42_RS01760 0.26 -2.0 400,905 + RR42_RS01760 0.35 -1.7 400,905 + RR42_RS01760 0.35 -4.4 400,905 + RR42_RS01760 0.35 -2.6 400,905 + RR42_RS01760 0.35 -2.0 400,906 - RR42_RS01760 0.35 -1.5 400,906 - RR42_RS01760 0.35 -4.0 400,938 - RR42_RS01760 0.37 -2.4 401,025 + RR42_RS01760 0.42 -2.9 401,026 - RR42_RS01760 0.42 -1.4 401,073 + RR42_RS01760 0.46 -3.4 401,074 - RR42_RS01760 0.46 -2.0 401,074 - RR42_RS01760 0.46 -1.8 401,561 - RR42_RS01760 0.77 -2.8 401,688 - RR42_RS01760 0.86 -3.3 401,691 + RR42_RS01760 0.86 -1.4 401,691 + RR42_RS01760 0.86 -2.6 401,691 + RR42_RS01760 0.86 -1.5 401,691 + RR42_RS01760 0.86 -1.8 401,691 + RR42_RS01760 0.86 -1.7 401,692 - RR42_RS01760 0.86 -2.8 401,692 - RR42_RS01760 0.86 -0.1 401,692 - RR42_RS01760 0.86 -1.7 401,692 - RR42_RS01760 0.86 -1.4 401,692 - RR42_RS01760 0.86 -0.6 401,692 - RR42_RS01760 0.86 -1.7 401,697 + RR42_RS01760 0.86 -0.8 401,697 + RR42_RS01760 0.86 -1.0 401,697 + RR42_RS01760 0.86 -3.0 401,697 + RR42_RS01760 0.86 +1.4 401,698 - RR42_RS01760 0.86 -3.3 401,698 - RR42_RS01760 0.86 -2.6 401,724 + RR42_RS01760 0.88 -0.6 401,724 + RR42_RS01760 0.88 -2.3 401,725 - RR42_RS01760 0.88 -1.8 401,771 + -2.5 401,771 + -2.0 401,772 - -2.1 401,772 - -3.0 401,823 - +1.4 401,899 - +1.4 401,899 - +2.8 402,011 - +0.1
Or see this region's nucleotide sequence