Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01750

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01740 and RR42_RS01745 are separated by 129 nucleotidesRR42_RS01745 and RR42_RS01750 are separated by 378 nucleotidesRR42_RS01750 and RR42_RS01755 are separated by 65 nucleotidesRR42_RS01755 and RR42_RS01760 are separated by 31 nucleotides RR42_RS01740: RR42_RS01740 - ATP-dependent protease, at 396,813 to 398,357 _RS01740 RR42_RS01745: RR42_RS01745 - phosphoheptose isomerase, at 398,487 to 398,750 _RS01745 RR42_RS01750: RR42_RS01750 - hypothetical protein, at 399,129 to 399,938 _RS01750 RR42_RS01755: RR42_RS01755 - nitrogen regulatory protein P-II 1, at 400,004 to 400,342 _RS01755 RR42_RS01760: RR42_RS01760 - ammonia channel protein, at 400,374 to 401,909 _RS01760 Position (kb) 399 400Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 398.163 kb on - strand, within RR42_RS01740at 398.258 kb on + strandat 398.259 kb on - strandat 398.751 kb on - strandat 398.751 kb on - strandat 398.887 kb on - strandat 398.930 kb on + strandat 398.931 kb on - strandat 398.931 kb on - strandat 398.940 kb on + strandat 398.940 kb on + strandat 398.940 kb on + strandat 398.940 kb on + strandat 398.941 kb on - strandat 399.050 kb on + strandat 399.073 kb on - strandat 399.080 kb on + strandat 399.080 kb on + strandat 399.080 kb on + strandat 399.081 kb on - strandat 399.098 kb on + strandat 399.300 kb on + strand, within RR42_RS01750at 399.301 kb on - strand, within RR42_RS01750at 399.301 kb on - strand, within RR42_RS01750at 399.301 kb on - strand, within RR42_RS01750at 399.301 kb on - strand, within RR42_RS01750at 399.381 kb on + strand, within RR42_RS01750at 399.381 kb on + strand, within RR42_RS01750at 399.381 kb on + strand, within RR42_RS01750at 399.381 kb on + strand, within RR42_RS01750at 399.381 kb on + strand, within RR42_RS01750at 399.382 kb on - strand, within RR42_RS01750at 399.382 kb on - strand, within RR42_RS01750at 399.382 kb on - strand, within RR42_RS01750at 399.407 kb on + strand, within RR42_RS01750at 399.407 kb on + strand, within RR42_RS01750at 399.408 kb on - strand, within RR42_RS01750at 399.408 kb on - strand, within RR42_RS01750at 399.462 kb on + strand, within RR42_RS01750at 399.462 kb on + strand, within RR42_RS01750at 399.462 kb on + strand, within RR42_RS01750at 399.463 kb on - strand, within RR42_RS01750at 399.510 kb on + strand, within RR42_RS01750at 399.511 kb on - strand, within RR42_RS01750at 399.511 kb on - strand, within RR42_RS01750at 399.531 kb on + strand, within RR42_RS01750at 399.532 kb on - strand, within RR42_RS01750at 399.532 kb on - strand, within RR42_RS01750at 399.532 kb on - strand, within RR42_RS01750at 399.532 kb on - strand, within RR42_RS01750at 399.534 kb on + strand, within RR42_RS01750at 399.535 kb on - strand, within RR42_RS01750at 399.535 kb on - strand, within RR42_RS01750at 399.535 kb on - strand, within RR42_RS01750at 399.537 kb on + strand, within RR42_RS01750at 399.550 kb on - strand, within RR42_RS01750at 399.573 kb on + strand, within RR42_RS01750at 399.574 kb on - strand, within RR42_RS01750at 399.574 kb on - strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.588 kb on + strand, within RR42_RS01750at 399.589 kb on - strand, within RR42_RS01750at 399.589 kb on - strand, within RR42_RS01750at 399.625 kb on - strand, within RR42_RS01750at 399.669 kb on + strand, within RR42_RS01750at 399.669 kb on + strand, within RR42_RS01750at 399.669 kb on + strand, within RR42_RS01750at 399.669 kb on + strand, within RR42_RS01750at 399.669 kb on + strand, within RR42_RS01750at 399.675 kb on + strand, within RR42_RS01750at 399.676 kb on - strand, within RR42_RS01750at 399.676 kb on - strand, within RR42_RS01750at 399.676 kb on - strand, within RR42_RS01750at 399.676 kb on - strand, within RR42_RS01750at 399.678 kb on + strand, within RR42_RS01750at 399.678 kb on + strand, within RR42_RS01750at 399.679 kb on - strand, within RR42_RS01750at 399.777 kb on + strand, within RR42_RS01750at 399.778 kb on - strand, within RR42_RS01750at 399.778 kb on - strand, within RR42_RS01750at 399.840 kb on + strand, within RR42_RS01750at 399.840 kb on + strand, within RR42_RS01750at 399.841 kb on - strand, within RR42_RS01750at 399.842 kb on + strand, within RR42_RS01750at 399.843 kb on - strand, within RR42_RS01750at 399.843 kb on - strand, within RR42_RS01750at 399.872 kb on + strandat 399.937 kb on - strandat 400.155 kb on - strand, within RR42_RS01755at 400.155 kb on - strand, within RR42_RS01755at 400.155 kb on - strand, within RR42_RS01755at 400.155 kb on - strand, within RR42_RS01755at 400.616 kb on + strand, within RR42_RS01760at 400.683 kb on + strand, within RR42_RS01760at 400.683 kb on + strand, within RR42_RS01760at 400.773 kb on + strand, within RR42_RS01760at 400.773 kb on + strand, within RR42_RS01760at 400.773 kb on + strand, within RR42_RS01760at 400.774 kb on - strand, within RR42_RS01760at 400.774 kb on - strand, within RR42_RS01760at 400.774 kb on - strand, within RR42_RS01760at 400.779 kb on + strand, within RR42_RS01760at 400.905 kb on + strand, within RR42_RS01760at 400.905 kb on + strand, within RR42_RS01760at 400.905 kb on + strand, within RR42_RS01760at 400.905 kb on + strand, within RR42_RS01760at 400.906 kb on - strand, within RR42_RS01760at 400.906 kb on - strand, within RR42_RS01760at 400.938 kb on - strand, within RR42_RS01760

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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398,163 - RR42_RS01740 0.87 -0.8
398,258 + +3.1
398,259 - +0.3
398,751 - -0.6
398,751 - +0.2
398,887 - -3.4
398,930 + -0.7
398,931 - -1.4
398,931 - -2.7
398,940 + -0.5
398,940 + -0.7
398,940 + +0.1
398,940 + +0.9
398,941 - -2.0
399,050 + +0.9
399,073 - -3.3
399,080 + +0.6
399,080 + -1.4
399,080 + +4.9
399,081 - -3.1
399,098 + -0.1
399,300 + RR42_RS01750 0.21 -0.7
399,301 - RR42_RS01750 0.21 -0.1
399,301 - RR42_RS01750 0.21 -2.8
399,301 - RR42_RS01750 0.21 -2.6
399,301 - RR42_RS01750 0.21 -2.0
399,381 + RR42_RS01750 0.31 -2.9
399,381 + RR42_RS01750 0.31 +1.2
399,381 + RR42_RS01750 0.31 -1.8
399,381 + RR42_RS01750 0.31 -0.3
399,381 + RR42_RS01750 0.31 -2.2
399,382 - RR42_RS01750 0.31 -3.4
399,382 - RR42_RS01750 0.31 -1.4
399,382 - RR42_RS01750 0.31 -0.6
399,407 + RR42_RS01750 0.34 -2.2
399,407 + RR42_RS01750 0.34 -1.3
399,408 - RR42_RS01750 0.34 -1.6
399,408 - RR42_RS01750 0.34 +0.7
399,462 + RR42_RS01750 0.41 -2.3
399,462 + RR42_RS01750 0.41 -1.8
399,462 + RR42_RS01750 0.41 -3.4
399,463 - RR42_RS01750 0.41 -0.6
399,510 + RR42_RS01750 0.47 -2.3
399,511 - RR42_RS01750 0.47 -1.3
399,511 - RR42_RS01750 0.47 -1.0
399,531 + RR42_RS01750 0.50 -0.6
399,532 - RR42_RS01750 0.50 -2.7
399,532 - RR42_RS01750 0.50 -0.8
399,532 - RR42_RS01750 0.50 -3.0
399,532 - RR42_RS01750 0.50 -1.7
399,534 + RR42_RS01750 0.50 -0.7
399,535 - RR42_RS01750 0.50 -1.7
399,535 - RR42_RS01750 0.50 +1.4
399,535 - RR42_RS01750 0.50 -1.3
399,537 + RR42_RS01750 0.50 -1.0
399,550 - RR42_RS01750 0.52 -1.8
399,573 + RR42_RS01750 0.55 -1.8
399,574 - RR42_RS01750 0.55 -1.6
399,574 - RR42_RS01750 0.55 -0.8
399,588 + RR42_RS01750 0.57 -1.4
399,588 + RR42_RS01750 0.57 -0.6
399,588 + RR42_RS01750 0.57 -0.6
399,588 + RR42_RS01750 0.57 -1.9
399,588 + RR42_RS01750 0.57 -1.3
399,588 + RR42_RS01750 0.57 -1.6
399,589 - RR42_RS01750 0.57 -2.8
399,589 - RR42_RS01750 0.57 -0.7
399,625 - RR42_RS01750 0.61 -1.3
399,669 + RR42_RS01750 0.67 -1.6
399,669 + RR42_RS01750 0.67 +0.0
399,669 + RR42_RS01750 0.67 -1.3
399,669 + RR42_RS01750 0.67 -1.6
399,669 + RR42_RS01750 0.67 -1.5
399,675 + RR42_RS01750 0.67 -1.1
399,676 - RR42_RS01750 0.68 -1.9
399,676 - RR42_RS01750 0.68 -1.6
399,676 - RR42_RS01750 0.68 -0.4
399,676 - RR42_RS01750 0.68 -1.1
399,678 + RR42_RS01750 0.68 -1.9
399,678 + RR42_RS01750 0.68 -1.4
399,679 - RR42_RS01750 0.68 -1.0
399,777 + RR42_RS01750 0.80 -0.7
399,778 - RR42_RS01750 0.80 -0.6
399,778 - RR42_RS01750 0.80 -0.9
399,840 + RR42_RS01750 0.88 -0.8
399,840 + RR42_RS01750 0.88 -2.8
399,841 - RR42_RS01750 0.88 +1.0
399,842 + RR42_RS01750 0.88 -2.3
399,843 - RR42_RS01750 0.88 -1.9
399,843 - RR42_RS01750 0.88 -0.1
399,872 + -1.3
399,937 - -2.1
400,155 - RR42_RS01755 0.45 -1.6
400,155 - RR42_RS01755 0.45 +0.1
400,155 - RR42_RS01755 0.45 +1.4
400,155 - RR42_RS01755 0.45 -3.9
400,616 + RR42_RS01760 0.16 -0.6
400,683 + RR42_RS01760 0.20 -3.1
400,683 + RR42_RS01760 0.20 -1.3
400,773 + RR42_RS01760 0.26 -1.7
400,773 + RR42_RS01760 0.26 -1.3
400,773 + RR42_RS01760 0.26 -0.7
400,774 - RR42_RS01760 0.26 -1.6
400,774 - RR42_RS01760 0.26 -1.3
400,774 - RR42_RS01760 0.26 -0.9
400,779 + RR42_RS01760 0.26 -2.0
400,905 + RR42_RS01760 0.35 -1.7
400,905 + RR42_RS01760 0.35 -4.4
400,905 + RR42_RS01760 0.35 -2.6
400,905 + RR42_RS01760 0.35 -2.0
400,906 - RR42_RS01760 0.35 -1.5
400,906 - RR42_RS01760 0.35 -4.0
400,938 - RR42_RS01760 0.37 -2.4

Or see this region's nucleotide sequence