Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01715 and RR42_RS01720 are separated by 214 nucleotides RR42_RS01720 and RR42_RS01725 are separated by 123 nucleotides RR42_RS01725 and RR42_RS01730 are separated by 126 nucleotides
RR42_RS01715: RR42_RS01715 - ATP-dependent DNA helicase, at 391,569 to 393,677
_RS01715
RR42_RS01720: RR42_RS01720 - membrane protein, at 393,892 to 394,446
_RS01720
RR42_RS01725: RR42_RS01725 - thioredoxin, at 394,570 to 395,073
_RS01725
RR42_RS01730: RR42_RS01730 - membrane protein, at 395,200 to 395,808
_RS01730
Position (kb)
393
394
395 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 392.911 kb on + strand, within RR42_RS01715 at 392.911 kb on + strand, within RR42_RS01715 at 392.912 kb on - strand, within RR42_RS01715 at 392.989 kb on + strand, within RR42_RS01715 at 392.990 kb on - strand, within RR42_RS01715 at 393.043 kb on + strand, within RR42_RS01715 at 393.044 kb on - strand, within RR42_RS01715 at 393.044 kb on - strand, within RR42_RS01715 at 393.054 kb on + strand, within RR42_RS01715 at 393.054 kb on + strand, within RR42_RS01715 at 393.085 kb on + strand, within RR42_RS01715 at 393.086 kb on - strand, within RR42_RS01715 at 393.149 kb on - strand, within RR42_RS01715 at 393.293 kb on - strand, within RR42_RS01715 at 393.607 kb on + strand at 393.779 kb on - strand at 393.779 kb on - strand at 393.779 kb on - strand at 393.779 kb on - strand at 393.834 kb on - strand at 394.104 kb on - strand, within RR42_RS01720 at 394.104 kb on - strand, within RR42_RS01720 at 394.476 kb on + strand at 394.476 kb on + strand at 394.482 kb on - strand at 394.621 kb on + strand, within RR42_RS01725 at 394.626 kb on - strand, within RR42_RS01725 at 394.626 kb on - strand, within RR42_RS01725 at 394.634 kb on + strand, within RR42_RS01725 at 394.635 kb on - strand, within RR42_RS01725 at 394.844 kb on + strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.845 kb on - strand, within RR42_RS01725 at 394.869 kb on - strand, within RR42_RS01725 at 394.869 kb on - strand, within RR42_RS01725 at 394.869 kb on - strand, within RR42_RS01725 at 395.032 kb on - strand at 395.137 kb on + strand at 395.137 kb on + strand at 395.137 kb on + strand at 395.138 kb on - strand at 395.138 kb on - strand at 395.162 kb on + strand at 395.163 kb on - strand at 395.168 kb on - strand at 395.171 kb on - strand at 395.357 kb on - strand, within RR42_RS01730
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 392,911 + RR42_RS01715 0.64 -1.3 392,911 + RR42_RS01715 0.64 +1.0 392,912 - RR42_RS01715 0.64 -0.0 392,989 + RR42_RS01715 0.67 -1.1 392,990 - RR42_RS01715 0.67 -0.8 393,043 + RR42_RS01715 0.70 -0.8 393,044 - RR42_RS01715 0.70 +0.8 393,044 - RR42_RS01715 0.70 -2.0 393,054 + RR42_RS01715 0.70 -0.9 393,054 + RR42_RS01715 0.70 -2.0 393,085 + RR42_RS01715 0.72 +0.2 393,086 - RR42_RS01715 0.72 -0.3 393,149 - RR42_RS01715 0.75 +0.1 393,293 - RR42_RS01715 0.82 -1.1 393,607 + -0.8 393,779 - +0.0 393,779 - -0.6 393,779 - +0.2 393,779 - -0.4 393,834 - +0.4 394,104 - RR42_RS01720 0.38 -2.6 394,104 - RR42_RS01720 0.38 -1.1 394,476 + +0.2 394,476 + +0.1 394,482 - -0.0 394,621 + RR42_RS01725 0.10 -0.1 394,626 - RR42_RS01725 0.11 -0.6 394,626 - RR42_RS01725 0.11 +0.8 394,634 + RR42_RS01725 0.13 -0.4 394,635 - RR42_RS01725 0.13 -1.0 394,844 + RR42_RS01725 0.54 +0.4 394,845 - RR42_RS01725 0.55 +0.2 394,845 - RR42_RS01725 0.55 +0.5 394,845 - RR42_RS01725 0.55 -0.5 394,845 - RR42_RS01725 0.55 +0.0 394,845 - RR42_RS01725 0.55 +0.4 394,845 - RR42_RS01725 0.55 +0.4 394,869 - RR42_RS01725 0.59 -0.4 394,869 - RR42_RS01725 0.59 +1.9 394,869 - RR42_RS01725 0.59 +1.6 395,032 - -1.0 395,137 + +1.6 395,137 + +0.4 395,137 + +0.8 395,138 - -0.0 395,138 - +0.3 395,162 + +0.0 395,163 - -0.3 395,168 - -1.1 395,171 - +1.4 395,357 - RR42_RS01730 0.26 +0.2
Or see this region's nucleotide sequence