Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01720

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS01715 and RR42_RS01720 are separated by 214 nucleotidesRR42_RS01720 and RR42_RS01725 are separated by 123 nucleotidesRR42_RS01725 and RR42_RS01730 are separated by 126 nucleotides RR42_RS01715: RR42_RS01715 - ATP-dependent DNA helicase, at 391,569 to 393,677 _RS01715 RR42_RS01720: RR42_RS01720 - membrane protein, at 393,892 to 394,446 _RS01720 RR42_RS01725: RR42_RS01725 - thioredoxin, at 394,570 to 395,073 _RS01725 RR42_RS01730: RR42_RS01730 - membrane protein, at 395,200 to 395,808 _RS01730 Position (kb) 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2at 392.911 kb on + strand, within RR42_RS01715at 392.911 kb on + strand, within RR42_RS01715at 392.912 kb on - strand, within RR42_RS01715at 392.989 kb on + strand, within RR42_RS01715at 392.990 kb on - strand, within RR42_RS01715at 393.043 kb on + strand, within RR42_RS01715at 393.044 kb on - strand, within RR42_RS01715at 393.044 kb on - strand, within RR42_RS01715at 393.054 kb on + strand, within RR42_RS01715at 393.054 kb on + strand, within RR42_RS01715at 393.085 kb on + strand, within RR42_RS01715at 393.086 kb on - strand, within RR42_RS01715at 393.149 kb on - strand, within RR42_RS01715at 393.293 kb on - strand, within RR42_RS01715at 393.607 kb on + strandat 393.779 kb on - strandat 393.779 kb on - strandat 393.779 kb on - strandat 393.779 kb on - strandat 393.834 kb on - strandat 394.104 kb on - strand, within RR42_RS01720at 394.104 kb on - strand, within RR42_RS01720at 394.476 kb on + strandat 394.476 kb on + strandat 394.482 kb on - strandat 394.621 kb on + strand, within RR42_RS01725at 394.626 kb on - strand, within RR42_RS01725at 394.626 kb on - strand, within RR42_RS01725at 394.634 kb on + strand, within RR42_RS01725at 394.635 kb on - strand, within RR42_RS01725at 394.844 kb on + strand, within RR42_RS01725at 394.845 kb on - strand, within RR42_RS01725at 394.845 kb on - strand, within RR42_RS01725at 394.845 kb on - strand, within RR42_RS01725at 394.845 kb on - strand, within RR42_RS01725at 394.845 kb on - strand, within RR42_RS01725at 394.845 kb on - strand, within RR42_RS01725at 394.869 kb on - strand, within RR42_RS01725at 394.869 kb on - strand, within RR42_RS01725at 394.869 kb on - strand, within RR42_RS01725at 395.032 kb on - strandat 395.137 kb on + strandat 395.137 kb on + strandat 395.137 kb on + strandat 395.138 kb on - strandat 395.138 kb on - strandat 395.162 kb on + strandat 395.163 kb on - strandat 395.168 kb on - strandat 395.171 kb on - strandat 395.357 kb on - strand, within RR42_RS01730

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
392,911 + RR42_RS01715 0.64 -1.3
392,911 + RR42_RS01715 0.64 +1.0
392,912 - RR42_RS01715 0.64 -0.0
392,989 + RR42_RS01715 0.67 -1.1
392,990 - RR42_RS01715 0.67 -0.8
393,043 + RR42_RS01715 0.70 -0.8
393,044 - RR42_RS01715 0.70 +0.8
393,044 - RR42_RS01715 0.70 -2.0
393,054 + RR42_RS01715 0.70 -0.9
393,054 + RR42_RS01715 0.70 -2.0
393,085 + RR42_RS01715 0.72 +0.2
393,086 - RR42_RS01715 0.72 -0.3
393,149 - RR42_RS01715 0.75 +0.1
393,293 - RR42_RS01715 0.82 -1.1
393,607 + -0.8
393,779 - +0.0
393,779 - -0.6
393,779 - +0.2
393,779 - -0.4
393,834 - +0.4
394,104 - RR42_RS01720 0.38 -2.6
394,104 - RR42_RS01720 0.38 -1.1
394,476 + +0.2
394,476 + +0.1
394,482 - -0.0
394,621 + RR42_RS01725 0.10 -0.1
394,626 - RR42_RS01725 0.11 -0.6
394,626 - RR42_RS01725 0.11 +0.8
394,634 + RR42_RS01725 0.13 -0.4
394,635 - RR42_RS01725 0.13 -1.0
394,844 + RR42_RS01725 0.54 +0.4
394,845 - RR42_RS01725 0.55 +0.2
394,845 - RR42_RS01725 0.55 +0.5
394,845 - RR42_RS01725 0.55 -0.5
394,845 - RR42_RS01725 0.55 +0.0
394,845 - RR42_RS01725 0.55 +0.4
394,845 - RR42_RS01725 0.55 +0.4
394,869 - RR42_RS01725 0.59 -0.4
394,869 - RR42_RS01725 0.59 +1.9
394,869 - RR42_RS01725 0.59 +1.6
395,032 - -1.0
395,137 + +1.6
395,137 + +0.4
395,137 + +0.8
395,138 - -0.0
395,138 - +0.3
395,162 + +0.0
395,163 - -0.3
395,168 - -1.1
395,171 - +1.4
395,357 - RR42_RS01730 0.26 +0.2

Or see this region's nucleotide sequence