Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01625 and RR42_RS01630 overlap by 4 nucleotides RR42_RS01630 and RR42_RS01635 are separated by 24 nucleotides RR42_RS01635 and RR42_RS01640 are separated by 26 nucleotides
RR42_RS01625: RR42_RS01625 - long-chain fatty acid--CoA ligase, at 369,975 to 371,945
_RS01625
RR42_RS01630: RR42_RS01630 - branched-chain amino acid ABC transporter ATP-binding protein, at 371,942 to 372,865
_RS01630
RR42_RS01635: RR42_RS01635 - ABC transporter permease, at 372,890 to 373,804
_RS01635
RR42_RS01640: RR42_RS01640 - ABC transporter permease, at 373,831 to 374,907
_RS01640
Position (kb) 372
373
374 Strain fitness (log2 ratio) -2
-1
0
1 at 371.900 kb on - strand at 371.900 kb on - strand at 371.900 kb on - strand at 372.163 kb on + strand, within RR42_RS01630 at 372.258 kb on - strand, within RR42_RS01630 at 372.924 kb on + strand at 372.974 kb on + strand at 372.975 kb on - strand at 373.019 kb on + strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.460 kb on - strand, within RR42_RS01635 at 373.460 kb on - strand, within RR42_RS01635 at 373.597 kb on + strand, within RR42_RS01635 at 373.664 kb on + strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.731 kb on - strand at 373.731 kb on - strand at 373.731 kb on - strand at 373.867 kb on + strand at 373.867 kb on + strand at 373.868 kb on - strand at 373.868 kb on - strand at 373.868 kb on - strand at 374.031 kb on + strand, within RR42_RS01640 at 374.032 kb on - strand, within RR42_RS01640 at 374.105 kb on - strand, within RR42_RS01640 at 374.152 kb on - strand, within RR42_RS01640 at 374.224 kb on + strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.570 kb on - strand, within RR42_RS01640 at 374.582 kb on - strand, within RR42_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 371,900 - -0.5 371,900 - -0.5 371,900 - -1.5 372,163 + RR42_RS01630 0.24 -0.4 372,258 - RR42_RS01630 0.34 +0.7 372,924 + -0.8 372,974 + -0.5 372,975 - -1.9 373,019 + RR42_RS01635 0.14 +0.9 373,020 - RR42_RS01635 0.14 +0.0 373,020 - RR42_RS01635 0.14 +0.7 373,020 - RR42_RS01635 0.14 +0.0 373,020 - RR42_RS01635 0.14 +0.3 373,460 - RR42_RS01635 0.62 +0.1 373,460 - RR42_RS01635 0.62 +0.5 373,597 + RR42_RS01635 0.77 +0.2 373,664 + RR42_RS01635 0.85 -0.5 373,665 - RR42_RS01635 0.85 -0.0 373,665 - RR42_RS01635 0.85 +1.5 373,665 - RR42_RS01635 0.85 -0.5 373,731 - -0.7 373,731 - -1.1 373,731 - +0.0 373,867 + -1.0 373,867 + -1.5 373,868 - +0.9 373,868 - -1.5 373,868 - +0.2 374,031 + RR42_RS01640 0.19 +1.0 374,032 - RR42_RS01640 0.19 -0.5 374,105 - RR42_RS01640 0.25 -0.1 374,152 - RR42_RS01640 0.30 -2.2 374,224 + RR42_RS01640 0.36 +0.7 374,375 - RR42_RS01640 0.51 -2.5 374,375 - RR42_RS01640 0.51 -1.7 374,570 - RR42_RS01640 0.69 -0.5 374,582 - RR42_RS01640 0.70 -0.2
Or see this region's nucleotide sequence