Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01160

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01155 and RR42_RS01160 are separated by 357 nucleotidesRR42_RS01160 and RR42_RS01165 overlap by 4 nucleotidesRR42_RS01165 and RR42_RS01170 are separated by 40 nucleotides RR42_RS01155: RR42_RS01155 - transcriptional regulator, at 265,323 to 266,021 _RS01155 RR42_RS01160: RR42_RS01160 - homoserine O-acetyltransferase, at 266,379 to 267,551 _RS01160 RR42_RS01165: RR42_RS01165 - methionine biosynthesis protein MetW, at 267,548 to 268,159 _RS01165 RR42_RS01170: RR42_RS01170 - LysR family transcriptional regulator, at 268,200 to 269,117 _RS01170 Position (kb) 266 267 268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 265.415 kb on + strand, within RR42_RS01155at 265.415 kb on + strand, within RR42_RS01155at 265.415 kb on + strand, within RR42_RS01155at 265.416 kb on - strand, within RR42_RS01155at 265.489 kb on + strand, within RR42_RS01155at 265.489 kb on + strand, within RR42_RS01155at 265.489 kb on + strand, within RR42_RS01155at 265.489 kb on + strand, within RR42_RS01155at 265.490 kb on - strand, within RR42_RS01155at 265.490 kb on - strand, within RR42_RS01155at 265.720 kb on + strand, within RR42_RS01155at 265.720 kb on + strand, within RR42_RS01155at 265.720 kb on + strand, within RR42_RS01155at 265.720 kb on + strand, within RR42_RS01155at 265.720 kb on + strand, within RR42_RS01155at 265.720 kb on + strand, within RR42_RS01155at 265.721 kb on - strand, within RR42_RS01155at 265.721 kb on - strand, within RR42_RS01155at 265.721 kb on - strand, within RR42_RS01155at 265.721 kb on - strand, within RR42_RS01155at 265.957 kb on + strandat 266.083 kb on + strandat 266.084 kb on - strandat 266.084 kb on - strandat 266.085 kb on + strandat 266.085 kb on + strandat 266.086 kb on - strandat 266.086 kb on - strandat 266.140 kb on + strandat 266.180 kb on + strandat 266.181 kb on - strandat 266.182 kb on + strandat 266.182 kb on + strandat 266.182 kb on + strandat 266.193 kb on - strandat 266.373 kb on + strandat 266.374 kb on - strandat 266.374 kb on - strandat 266.505 kb on + strand, within RR42_RS01160at 266.505 kb on + strand, within RR42_RS01160at 266.506 kb on - strand, within RR42_RS01160at 266.506 kb on - strand, within RR42_RS01160at 266.579 kb on + strand, within RR42_RS01160at 266.607 kb on + strand, within RR42_RS01160at 266.607 kb on + strand, within RR42_RS01160at 266.607 kb on + strand, within RR42_RS01160at 266.607 kb on + strand, within RR42_RS01160at 266.608 kb on - strand, within RR42_RS01160at 266.707 kb on + strand, within RR42_RS01160at 266.707 kb on + strand, within RR42_RS01160at 266.708 kb on - strand, within RR42_RS01160at 266.766 kb on + strand, within RR42_RS01160at 266.767 kb on - strand, within RR42_RS01160at 267.036 kb on + strand, within RR42_RS01160at 267.036 kb on + strand, within RR42_RS01160at 267.037 kb on - strand, within RR42_RS01160at 267.037 kb on - strand, within RR42_RS01160at 267.039 kb on + strand, within RR42_RS01160at 267.039 kb on + strand, within RR42_RS01160at 267.039 kb on + strand, within RR42_RS01160at 267.040 kb on - strand, within RR42_RS01160at 267.040 kb on - strand, within RR42_RS01160at 267.095 kb on + strand, within RR42_RS01160at 267.102 kb on + strand, within RR42_RS01160at 267.198 kb on + strand, within RR42_RS01160at 267.199 kb on - strand, within RR42_RS01160at 267.199 kb on - strand, within RR42_RS01160at 267.199 kb on - strand, within RR42_RS01160at 267.231 kb on + strand, within RR42_RS01160at 267.231 kb on + strand, within RR42_RS01160at 267.249 kb on + strand, within RR42_RS01160at 267.276 kb on + strand, within RR42_RS01160at 267.439 kb on - strandat 267.439 kb on - strandat 267.439 kb on - strandat 267.496 kb on - strandat 267.516 kb on + strandat 267.517 kb on - strandat 267.517 kb on - strandat 267.520 kb on - strandat 267.541 kb on + strandat 267.541 kb on + strandat 267.542 kb on - strandat 267.542 kb on - strandat 267.701 kb on + strand, within RR42_RS01165at 267.815 kb on - strand, within RR42_RS01165at 267.984 kb on - strand, within RR42_RS01165at 267.992 kb on + strand, within RR42_RS01165at 267.992 kb on + strand, within RR42_RS01165at 267.993 kb on - strand, within RR42_RS01165at 268.009 kb on - strand, within RR42_RS01165at 268.009 kb on - strand, within RR42_RS01165at 268.237 kb on + strandat 268.238 kb on - strandat 268.245 kb on - strandat 268.285 kb on + strandat 268.286 kb on - strandat 268.305 kb on + strand, within RR42_RS01170at 268.306 kb on - strand, within RR42_RS01170at 268.306 kb on - strand, within RR42_RS01170at 268.306 kb on - strand, within RR42_RS01170at 268.306 kb on - strand, within RR42_RS01170at 268.540 kb on + strand, within RR42_RS01170at 268.540 kb on + strand, within RR42_RS01170at 268.541 kb on - strand, within RR42_RS01170at 268.541 kb on - strand, within RR42_RS01170

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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265,415 + RR42_RS01155 0.13 +0.6
265,415 + RR42_RS01155 0.13 -0.7
265,415 + RR42_RS01155 0.13 -1.3
265,416 - RR42_RS01155 0.13 +0.5
265,489 + RR42_RS01155 0.24 +0.4
265,489 + RR42_RS01155 0.24 -0.7
265,489 + RR42_RS01155 0.24 +0.8
265,489 + RR42_RS01155 0.24 -0.2
265,490 - RR42_RS01155 0.24 +0.1
265,490 - RR42_RS01155 0.24 -0.3
265,720 + RR42_RS01155 0.57 +0.5
265,720 + RR42_RS01155 0.57 +1.0
265,720 + RR42_RS01155 0.57 -0.7
265,720 + RR42_RS01155 0.57 +0.7
265,720 + RR42_RS01155 0.57 +0.3
265,720 + RR42_RS01155 0.57 -1.9
265,721 - RR42_RS01155 0.57 +0.5
265,721 - RR42_RS01155 0.57 +0.8
265,721 - RR42_RS01155 0.57 +0.1
265,721 - RR42_RS01155 0.57 +0.7
265,957 + +0.3
266,083 + -2.7
266,084 - -1.8
266,084 - -1.7
266,085 + -0.0
266,085 + +0.5
266,086 - -2.7
266,086 - +0.8
266,140 + +0.8
266,180 + +0.8
266,181 - -1.6
266,182 + +1.0
266,182 + -1.0
266,182 + -0.2
266,193 - -1.5
266,373 + -1.0
266,374 - -3.0
266,374 - -3.6
266,505 + RR42_RS01160 0.11 -3.3
266,505 + RR42_RS01160 0.11 -0.8
266,506 - RR42_RS01160 0.11 +0.4
266,506 - RR42_RS01160 0.11 -3.2
266,579 + RR42_RS01160 0.17 -3.3
266,607 + RR42_RS01160 0.19 +1.2
266,607 + RR42_RS01160 0.19 -0.8
266,607 + RR42_RS01160 0.19 -2.3
266,607 + RR42_RS01160 0.19 +0.5
266,608 - RR42_RS01160 0.20 -4.1
266,707 + RR42_RS01160 0.28 -1.2
266,707 + RR42_RS01160 0.28 -2.4
266,708 - RR42_RS01160 0.28 -2.5
266,766 + RR42_RS01160 0.33 -2.4
266,767 - RR42_RS01160 0.33 -4.2
267,036 + RR42_RS01160 0.56 -4.3
267,036 + RR42_RS01160 0.56 -1.8
267,037 - RR42_RS01160 0.56 -3.9
267,037 - RR42_RS01160 0.56 -2.5
267,039 + RR42_RS01160 0.56 -3.3
267,039 + RR42_RS01160 0.56 +0.1
267,039 + RR42_RS01160 0.56 -2.8
267,040 - RR42_RS01160 0.56 -2.4
267,040 - RR42_RS01160 0.56 -2.2
267,095 + RR42_RS01160 0.61 -0.5
267,102 + RR42_RS01160 0.62 -1.9
267,198 + RR42_RS01160 0.70 -2.4
267,199 - RR42_RS01160 0.70 +1.5
267,199 - RR42_RS01160 0.70 -4.7
267,199 - RR42_RS01160 0.70 -3.7
267,231 + RR42_RS01160 0.73 -2.4
267,231 + RR42_RS01160 0.73 -1.5
267,249 + RR42_RS01160 0.74 -2.5
267,276 + RR42_RS01160 0.76 -3.3
267,439 - -4.1
267,439 - -3.2
267,439 - -1.6
267,496 - -2.2
267,516 + -1.2
267,517 - -2.0
267,517 - -3.8
267,520 - -1.9
267,541 + +0.1
267,541 + +1.7
267,542 - -3.8
267,542 - -1.0
267,701 + RR42_RS01165 0.25 +0.3
267,815 - RR42_RS01165 0.44 +0.2
267,984 - RR42_RS01165 0.71 +1.3
267,992 + RR42_RS01165 0.73 +0.7
267,992 + RR42_RS01165 0.73 +0.5
267,993 - RR42_RS01165 0.73 -0.6
268,009 - RR42_RS01165 0.75 +0.6
268,009 - RR42_RS01165 0.75 -3.3
268,237 + +0.9
268,238 - +1.5
268,245 - -0.6
268,285 + +0.0
268,286 - -1.0
268,305 + RR42_RS01170 0.11 +0.5
268,306 - RR42_RS01170 0.12 +0.0
268,306 - RR42_RS01170 0.12 -0.8
268,306 - RR42_RS01170 0.12 -0.3
268,306 - RR42_RS01170 0.12 +1.5
268,540 + RR42_RS01170 0.37 +1.2
268,540 + RR42_RS01170 0.37 -0.5
268,541 - RR42_RS01170 0.37 -0.5
268,541 - RR42_RS01170 0.37 -0.1

Or see this region's nucleotide sequence