Experiment: 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_607 and Pf1N1B4_608 are separated by 109 nucleotides Pf1N1B4_608 and Pf1N1B4_609 are separated by 164 nucleotides Pf1N1B4_609 and Pf1N1B4_610 are separated by 177 nucleotides
Pf1N1B4_607 - TonB-dependent hemin , ferrichrome receptor, at 699,251 to 701,812
_607
Pf1N1B4_608 - Heme oxygenase HemO, associated with heme uptake, at 701,922 to 702,530
_608
Pf1N1B4_609 - FIG039061: hypothetical protein related to heme utilization, at 702,695 to 703,090
_609
Pf1N1B4_610 - Methyl-accepting chemotaxis transducer, at 703,268 to 705,406
_610
Position (kb)
701
702
703 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 701.012 kb on + strand, within Pf1N1B4_607 at 701.013 kb on - strand, within Pf1N1B4_607 at 701.013 kb on - strand, within Pf1N1B4_607 at 701.013 kb on - strand, within Pf1N1B4_607 at 701.013 kb on - strand, within Pf1N1B4_607 at 701.030 kb on + strand, within Pf1N1B4_607 at 701.031 kb on - strand, within Pf1N1B4_607 at 701.031 kb on - strand, within Pf1N1B4_607 at 701.031 kb on - strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.088 kb on - strand at 701.088 kb on - strand, within Pf1N1B4_607 at 701.088 kb on - strand, within Pf1N1B4_607 at 701.088 kb on - strand, within Pf1N1B4_607 at 701.088 kb on - strand, within Pf1N1B4_607 at 701.088 kb on - strand, within Pf1N1B4_607 at 701.165 kb on + strand, within Pf1N1B4_607 at 701.166 kb on - strand, within Pf1N1B4_607 at 701.166 kb on - strand, within Pf1N1B4_607 at 701.166 kb on - strand, within Pf1N1B4_607 at 701.222 kb on + strand, within Pf1N1B4_607 at 701.223 kb on - strand at 701.223 kb on - strand, within Pf1N1B4_607 at 701.223 kb on - strand, within Pf1N1B4_607 at 701.223 kb on - strand, within Pf1N1B4_607 at 701.223 kb on - strand, within Pf1N1B4_607 at 701.223 kb on - strand at 701.232 kb on - strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.379 kb on - strand, within Pf1N1B4_607 at 701.381 kb on - strand, within Pf1N1B4_607 at 701.400 kb on - strand, within Pf1N1B4_607 at 701.400 kb on - strand, within Pf1N1B4_607 at 701.477 kb on + strand, within Pf1N1B4_607 at 701.492 kb on + strand, within Pf1N1B4_607 at 701.492 kb on + strand, within Pf1N1B4_607 at 701.492 kb on + strand, within Pf1N1B4_607 at 701.493 kb on - strand, within Pf1N1B4_607 at 701.493 kb on - strand, within Pf1N1B4_607 at 701.624 kb on + strand at 701.624 kb on + strand at 701.624 kb on + strand at 701.624 kb on + strand at 701.625 kb on - strand at 701.663 kb on + strand at 701.663 kb on + strand at 701.663 kb on + strand at 701.664 kb on - strand at 701.664 kb on - strand at 701.664 kb on - strand at 701.664 kb on - strand at 701.684 kb on + strand at 701.684 kb on + strand at 701.685 kb on - strand at 701.685 kb on - strand at 702.075 kb on + strand, within Pf1N1B4_608 at 702.076 kb on - strand, within Pf1N1B4_608 at 702.076 kb on - strand, within Pf1N1B4_608 at 702.230 kb on + strand, within Pf1N1B4_608 at 702.487 kb on + strand at 702.487 kb on + strand at 702.488 kb on - strand at 702.504 kb on + strand at 702.604 kb on + strand at 702.682 kb on - strand at 702.741 kb on + strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 703.160 kb on + strand at 703.160 kb on + strand at 703.160 kb on + strand at 703.160 kb on + strand at 703.161 kb on - strand at 703.267 kb on + strand at 703.267 kb on + strand at 703.268 kb on - strand at 703.361 kb on + strand at 703.361 kb on + strand at 703.361 kb on + strand at 703.361 kb on + strand at 703.362 kb on - strand at 703.362 kb on - strand at 703.362 kb on - strand at 703.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM remove 701,012 + Pf1N1B4_607 0.69 -1.6 701,013 - Pf1N1B4_607 0.69 -0.5 701,013 - Pf1N1B4_607 0.69 +0.9 701,013 - Pf1N1B4_607 0.69 -0.1 701,013 - Pf1N1B4_607 0.69 +1.1 701,030 + Pf1N1B4_607 0.69 -1.4 701,031 - Pf1N1B4_607 0.69 +0.8 701,031 - Pf1N1B4_607 0.69 -0.3 701,031 - Pf1N1B4_607 0.69 +0.0 701,087 + Pf1N1B4_607 0.72 +0.3 701,087 + Pf1N1B4_607 0.72 +1.6 701,087 + Pf1N1B4_607 0.72 -0.2 701,087 + Pf1N1B4_607 0.72 +0.0 701,087 + Pf1N1B4_607 0.72 +0.8 701,087 + Pf1N1B4_607 0.72 -0.8 701,087 + Pf1N1B4_607 0.72 -1.1 701,088 - +0.2 701,088 - Pf1N1B4_607 0.72 -0.8 701,088 - Pf1N1B4_607 0.72 -0.1 701,088 - Pf1N1B4_607 0.72 -2.4 701,088 - Pf1N1B4_607 0.72 -0.4 701,088 - Pf1N1B4_607 0.72 +0.3 701,165 + Pf1N1B4_607 0.75 +0.8 701,166 - Pf1N1B4_607 0.75 -1.2 701,166 - Pf1N1B4_607 0.75 +0.2 701,166 - Pf1N1B4_607 0.75 +0.3 701,222 + Pf1N1B4_607 0.77 -0.2 701,223 - -0.8 701,223 - Pf1N1B4_607 0.77 +0.3 701,223 - Pf1N1B4_607 0.77 +0.8 701,223 - Pf1N1B4_607 0.77 -0.4 701,223 - Pf1N1B4_607 0.77 -0.4 701,223 - -1.2 701,232 - Pf1N1B4_607 0.77 +1.0 701,378 + Pf1N1B4_607 0.83 -1.6 701,378 + Pf1N1B4_607 0.83 +0.3 701,378 + Pf1N1B4_607 0.83 -0.9 701,378 + Pf1N1B4_607 0.83 +0.6 701,378 + Pf1N1B4_607 0.83 +1.2 701,378 + Pf1N1B4_607 0.83 -1.1 701,379 - Pf1N1B4_607 0.83 +1.2 701,381 - Pf1N1B4_607 0.83 +0.9 701,400 - Pf1N1B4_607 0.84 -0.8 701,400 - Pf1N1B4_607 0.84 +0.3 701,477 + Pf1N1B4_607 0.87 -1.0 701,492 + Pf1N1B4_607 0.87 +1.0 701,492 + Pf1N1B4_607 0.87 +0.6 701,492 + Pf1N1B4_607 0.87 +0.0 701,493 - Pf1N1B4_607 0.88 +0.6 701,493 - Pf1N1B4_607 0.88 +0.9 701,624 + -1.4 701,624 + -1.1 701,624 + +0.8 701,624 + +0.8 701,625 - +2.3 701,663 + -2.1 701,663 + +0.8 701,663 + +0.8 701,664 - +0.8 701,664 - -0.1 701,664 - +0.0 701,664 - -1.4 701,684 + +0.8 701,684 + -0.1 701,685 - -0.5 701,685 - +0.2 702,075 + Pf1N1B4_608 0.25 +1.3 702,076 - Pf1N1B4_608 0.25 -0.6 702,076 - Pf1N1B4_608 0.25 -0.8 702,230 + Pf1N1B4_608 0.51 -0.2 702,487 + -0.2 702,487 + -0.7 702,488 - +1.6 702,504 + -1.2 702,604 + -0.2 702,682 - +0.0 702,741 + Pf1N1B4_609 0.12 +1.2 702,766 - Pf1N1B4_609 0.18 +0.2 702,766 - Pf1N1B4_609 0.18 -0.4 702,766 - Pf1N1B4_609 0.18 +0.6 702,766 - Pf1N1B4_609 0.18 +0.8 702,766 - +0.3 702,766 - Pf1N1B4_609 0.18 -0.8 702,766 - Pf1N1B4_609 0.18 -0.8 703,160 + -2.1 703,160 + -0.8 703,160 + +0.2 703,160 + -1.2 703,161 - -1.6 703,267 + -2.4 703,267 + -1.0 703,268 - -0.8 703,361 + +0.2 703,361 + +1.3 703,361 + -0.2 703,361 + +3.1 703,362 - -0.2 703,362 - -1.2 703,362 - -0.6 703,418 - +0.4
Or see this region's nucleotide sequence