Experiment: 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5987 and Pf1N1B4_5988 overlap by 4 nucleotides Pf1N1B4_5988 and Pf1N1B4_5989 overlap by 28 nucleotides Pf1N1B4_5989 and Pf1N1B4_5990 are separated by 177 nucleotides
Pf1N1B4_5987 - FIG067310: hypothetical protein, at 439,298 to 440,068
_5987
Pf1N1B4_5988 - FIG067310: hypothetical protein, at 440,065 to 440,580
_5988
Pf1N1B4_5989 - FIG067310: hypothetical protein, at 440,553 to 441,260
_5989
Pf1N1B4_5990 - FIG00998616: hypothetical protein, at 441,438 to 442,103
_5990
Position (kb) 440
441
442 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 439.566 kb on + strand, within Pf1N1B4_5987 at 439.566 kb on + strand, within Pf1N1B4_5987 at 439.566 kb on + strand, within Pf1N1B4_5987 at 439.566 kb on + strand, within Pf1N1B4_5987 at 439.566 kb on + strand, within Pf1N1B4_5987 at 439.567 kb on - strand, within Pf1N1B4_5987 at 439.567 kb on - strand at 439.737 kb on + strand, within Pf1N1B4_5987 at 439.737 kb on + strand, within Pf1N1B4_5987 at 439.737 kb on + strand, within Pf1N1B4_5987 at 439.798 kb on - strand, within Pf1N1B4_5987 at 439.800 kb on + strand, within Pf1N1B4_5987 at 439.800 kb on + strand, within Pf1N1B4_5987 at 439.801 kb on - strand, within Pf1N1B4_5987 at 439.996 kb on + strand at 440.120 kb on + strand, within Pf1N1B4_5988 at 440.273 kb on + strand, within Pf1N1B4_5988 at 440.492 kb on + strand, within Pf1N1B4_5988 at 440.492 kb on + strand, within Pf1N1B4_5988 at 440.492 kb on + strand, within Pf1N1B4_5988 at 440.492 kb on + strand, within Pf1N1B4_5988 at 440.492 kb on + strand, within Pf1N1B4_5988 at 440.492 kb on + strand, within Pf1N1B4_5988 at 440.492 kb on + strand, within Pf1N1B4_5988 at 440.492 kb on + strand, within Pf1N1B4_5988 at 440.492 kb on + strand, within Pf1N1B4_5988 at 440.492 kb on + strand, within Pf1N1B4_5988 at 440.493 kb on - strand, within Pf1N1B4_5988 at 440.537 kb on + strand at 440.770 kb on + strand, within Pf1N1B4_5989 at 440.770 kb on + strand, within Pf1N1B4_5989 at 440.770 kb on + strand, within Pf1N1B4_5989 at 440.812 kb on + strand, within Pf1N1B4_5989 at 440.812 kb on + strand, within Pf1N1B4_5989 at 440.813 kb on - strand, within Pf1N1B4_5989 at 440.816 kb on - strand, within Pf1N1B4_5989 at 440.828 kb on - strand, within Pf1N1B4_5989 at 441.016 kb on + strand, within Pf1N1B4_5989 at 441.016 kb on + strand, within Pf1N1B4_5989 at 441.085 kb on + strand, within Pf1N1B4_5989 at 441.269 kb on - strand at 441.296 kb on + strand at 441.296 kb on + strand at 441.297 kb on - strand at 441.332 kb on + strand at 441.406 kb on + strand at 441.439 kb on + strand at 442.201 kb on + strand at 442.201 kb on + strand at 442.201 kb on + strand at 442.201 kb on + strand at 442.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM remove 439,566 + Pf1N1B4_5987 0.35 +0.2 439,566 + Pf1N1B4_5987 0.35 +0.2 439,566 + Pf1N1B4_5987 0.35 +0.5 439,566 + Pf1N1B4_5987 0.35 +0.8 439,566 + Pf1N1B4_5987 0.35 -0.9 439,567 - Pf1N1B4_5987 0.35 +0.5 439,567 - +1.1 439,737 + Pf1N1B4_5987 0.57 +0.5 439,737 + Pf1N1B4_5987 0.57 +1.0 439,737 + Pf1N1B4_5987 0.57 -0.1 439,798 - Pf1N1B4_5987 0.65 +1.9 439,800 + Pf1N1B4_5987 0.65 -1.3 439,800 + Pf1N1B4_5987 0.65 -0.2 439,801 - Pf1N1B4_5987 0.65 -1.5 439,996 + +0.1 440,120 + Pf1N1B4_5988 0.11 -0.5 440,273 + Pf1N1B4_5988 0.40 -2.3 440,492 + Pf1N1B4_5988 0.83 -2.1 440,492 + Pf1N1B4_5988 0.83 -0.3 440,492 + Pf1N1B4_5988 0.83 -1.4 440,492 + Pf1N1B4_5988 0.83 +3.0 440,492 + Pf1N1B4_5988 0.83 -1.5 440,492 + Pf1N1B4_5988 0.83 +0.0 440,492 + Pf1N1B4_5988 0.83 -1.8 440,492 + Pf1N1B4_5988 0.83 -0.5 440,492 + Pf1N1B4_5988 0.83 +0.5 440,492 + Pf1N1B4_5988 0.83 -0.7 440,493 - Pf1N1B4_5988 0.83 +0.3 440,537 + +0.2 440,770 + Pf1N1B4_5989 0.31 -1.3 440,770 + Pf1N1B4_5989 0.31 -0.1 440,770 + Pf1N1B4_5989 0.31 -0.7 440,812 + Pf1N1B4_5989 0.37 -1.1 440,812 + Pf1N1B4_5989 0.37 -0.8 440,813 - Pf1N1B4_5989 0.37 -1.8 440,816 - Pf1N1B4_5989 0.37 -1.1 440,828 - Pf1N1B4_5989 0.39 +1.7 441,016 + Pf1N1B4_5989 0.65 -0.5 441,016 + Pf1N1B4_5989 0.65 +1.3 441,085 + Pf1N1B4_5989 0.75 -2.3 441,269 - +0.0 441,296 + -0.5 441,296 + +1.5 441,297 - -0.5 441,332 + +0.3 441,406 + +0.1 441,439 + +0.1 442,201 + +0.9 442,201 + -0.1 442,201 + +0.2 442,201 + -0.8 442,202 - -0.8
Or see this region's nucleotide sequence