Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5980

Experiment: 5-Hydroxymethylfurfural 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5979 and Pf1N1B4_5980 are separated by 255 nucleotidesPf1N1B4_5980 and Pf1N1B4_5981 are separated by 239 nucleotidesPf1N1B4_5981 and Pf1N1B4_5982 are separated by 140 nucleotides Pf1N1B4_5979 - Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-), at 428,117 to 429,124 _5979 Pf1N1B4_5980 - Organic hydroperoxide resistance protein, at 429,380 to 429,832 _5980 Pf1N1B4_5981 - Organic hydroperoxide resistance transcriptional regulator, at 430,072 to 430,533 _5981 Pf1N1B4_5982 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 430,674 to 432,317 _5982 Position (kb) 429 430Strain fitness (log2 ratio) -2 -1 0 1at 428.711 kb on - strand, within Pf1N1B4_5979at 428.711 kb on - strand, within Pf1N1B4_5979at 429.214 kb on + strandat 429.236 kb on - strandat 429.684 kb on - strand, within Pf1N1B4_5980at 429.859 kb on - strandat 429.859 kb on - strandat 429.906 kb on + strandat 429.907 kb on - strandat 429.907 kb on - strandat 429.907 kb on - strandat 429.907 kb on - strandat 429.907 kb on - strandat 429.907 kb on - strandat 430.201 kb on + strand, within Pf1N1B4_5981at 430.210 kb on + strand, within Pf1N1B4_5981at 430.540 kb on - strandat 430.563 kb on + strandat 430.619 kb on + strandat 430.706 kb on + strandat 430.707 kb on - strandat 430.707 kb on - strandat 430.707 kb on - strandat 430.707 kb on - strandat 430.707 kb on - strandat 430.707 kb on - strandat 430.710 kb on + strandat 430.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM
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428,711 - Pf1N1B4_5979 0.59 -0.8
428,711 - Pf1N1B4_5979 0.59 -2.1
429,214 + +0.5
429,236 - +0.5
429,684 - Pf1N1B4_5980 0.67 +0.5
429,859 - +1.7
429,859 - -1.8
429,906 + -0.6
429,907 - +0.5
429,907 - -0.2
429,907 - -0.3
429,907 - +0.3
429,907 - +0.1
429,907 - -0.2
430,201 + Pf1N1B4_5981 0.28 -0.3
430,210 + Pf1N1B4_5981 0.30 -1.7
430,540 - -0.9
430,563 + -0.2
430,619 + +0.8
430,706 + +0.7
430,707 - +0.4
430,707 - +1.1
430,707 - +0.8
430,707 - +0.8
430,707 - +1.0
430,707 - -0.2
430,710 + -0.5
430,731 - -0.4

Or see this region's nucleotide sequence