Experiment: 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5859 and Pf1N1B4_5860 are separated by 213 nucleotides Pf1N1B4_5860 and Pf1N1B4_5861 are separated by 555 nucleotides
Pf1N1B4_5859 - Glutamate carboxypeptidase (EC 3.4.17.11), at 292,416 to 293,657
_5859
Pf1N1B4_5860 - Two-component response regulator, at 293,871 to 294,806
_5860
Pf1N1B4_5861 - Alpha/beta hydrolase fold (EC 3.8.1.5), at 295,362 to 296,288
_5861
Position (kb) 293
294
295 Strain fitness (log2 ratio) -1
0
1
2
3 at 293.067 kb on + strand, within Pf1N1B4_5859 at 293.068 kb on - strand, within Pf1N1B4_5859 at 293.200 kb on + strand, within Pf1N1B4_5859 at 293.200 kb on + strand, within Pf1N1B4_5859 at 293.200 kb on + strand, within Pf1N1B4_5859 at 293.200 kb on + strand, within Pf1N1B4_5859 at 293.200 kb on + strand, within Pf1N1B4_5859 at 293.200 kb on + strand, within Pf1N1B4_5859 at 293.201 kb on - strand at 293.201 kb on - strand, within Pf1N1B4_5859 at 293.534 kb on - strand at 293.695 kb on + strand at 293.695 kb on + strand at 293.793 kb on + strand at 293.793 kb on + strand at 294.061 kb on + strand, within Pf1N1B4_5860 at 294.198 kb on + strand, within Pf1N1B4_5860 at 294.199 kb on - strand, within Pf1N1B4_5860 at 294.251 kb on + strand, within Pf1N1B4_5860 at 294.252 kb on - strand, within Pf1N1B4_5860 at 294.499 kb on + strand, within Pf1N1B4_5860 at 294.562 kb on - strand at 295.007 kb on + strand at 295.051 kb on + strand at 295.093 kb on + strand at 295.093 kb on + strand at 295.093 kb on + strand at 295.093 kb on + strand at 295.093 kb on + strand at 295.093 kb on + strand at 295.093 kb on + strand at 295.093 kb on + strand at 295.093 kb on + strand at 295.093 kb on + strand at 295.094 kb on - strand at 295.094 kb on - strand at 295.094 kb on - strand at 295.094 kb on - strand at 295.094 kb on - strand at 295.094 kb on - strand at 295.094 kb on - strand at 295.094 kb on - strand at 295.094 kb on - strand at 295.139 kb on + strand at 295.140 kb on - strand at 295.140 kb on - strand at 295.440 kb on + strand at 295.441 kb on - strand at 295.575 kb on + strand, within Pf1N1B4_5861 at 295.641 kb on - strand, within Pf1N1B4_5861 at 295.756 kb on + strand, within Pf1N1B4_5861 at 295.757 kb on - strand, within Pf1N1B4_5861
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM remove 293,067 + Pf1N1B4_5859 0.52 +0.7 293,068 - Pf1N1B4_5859 0.52 +0.1 293,200 + Pf1N1B4_5859 0.63 -0.0 293,200 + Pf1N1B4_5859 0.63 +0.9 293,200 + Pf1N1B4_5859 0.63 -1.3 293,200 + Pf1N1B4_5859 0.63 +0.7 293,200 + Pf1N1B4_5859 0.63 -1.0 293,200 + Pf1N1B4_5859 0.63 +0.5 293,201 - +1.2 293,201 - Pf1N1B4_5859 0.63 +0.9 293,534 - -0.1 293,695 + +0.5 293,695 + +1.2 293,793 + -0.2 293,793 + +0.2 294,061 + Pf1N1B4_5860 0.20 -0.9 294,198 + Pf1N1B4_5860 0.35 -1.3 294,199 - Pf1N1B4_5860 0.35 +1.1 294,251 + Pf1N1B4_5860 0.41 -0.5 294,252 - Pf1N1B4_5860 0.41 -0.9 294,499 + Pf1N1B4_5860 0.67 -0.2 294,562 - +0.8 295,007 + -0.2 295,051 + -0.6 295,093 + +0.9 295,093 + -0.2 295,093 + +0.1 295,093 + -0.3 295,093 + +0.0 295,093 + +0.0 295,093 + +0.5 295,093 + +0.5 295,093 + +0.5 295,093 + +0.3 295,094 - +0.9 295,094 - +0.5 295,094 - +3.1 295,094 - +0.0 295,094 - -0.6 295,094 - +1.5 295,094 - -1.1 295,094 - +0.5 295,094 - -0.0 295,139 + +0.1 295,140 - +1.2 295,140 - -1.0 295,440 + -1.1 295,441 - +0.4 295,575 + Pf1N1B4_5861 0.23 +0.5 295,641 - Pf1N1B4_5861 0.30 -0.0 295,756 + Pf1N1B4_5861 0.43 +0.5 295,757 - Pf1N1B4_5861 0.43 -0.2
Or see this region's nucleotide sequence