Experiment: 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5758 and Pf1N1B4_5759 are separated by 78 nucleotides Pf1N1B4_5759 and Pf1N1B4_5760 are separated by 3 nucleotides Pf1N1B4_5760 and Pf1N1B4_5761 are separated by 79 nucleotides Pf1N1B4_5761 and Pf1N1B4_5762 are separated by 11 nucleotides
Pf1N1B4_5758 - Nitric oxide reductase activation protein NorD, at 197,263 to 199,104
_5758
Pf1N1B4_5759 - Nitric-oxide reductase subunit B (EC 1.7.99.7), at 199,183 to 200,610
_5759
Pf1N1B4_5760 - Nitric-oxide reductase subunit C (EC 1.7.99.7), at 200,614 to 201,222
_5760
Pf1N1B4_5761 - Nitric oxide reductase activation protein NorF, at 201,302 to 201,559
_5761
Pf1N1B4_5762 - Nitric oxide reductase activation protein NorE, at 201,571 to 202,098
_5762
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 198.369 kb on + strand at 198.837 kb on + strand, within Pf1N1B4_5758 at 199.167 kb on + strand at 199.193 kb on - strand at 199.243 kb on - strand at 199.251 kb on - strand at 199.515 kb on - strand, within Pf1N1B4_5759 at 199.553 kb on + strand at 199.554 kb on - strand at 199.554 kb on - strand at 199.669 kb on - strand, within Pf1N1B4_5759 at 199.887 kb on - strand, within Pf1N1B4_5759 at 199.887 kb on - strand, within Pf1N1B4_5759 at 199.887 kb on - strand, within Pf1N1B4_5759 at 200.010 kb on - strand, within Pf1N1B4_5759 at 200.043 kb on - strand, within Pf1N1B4_5759 at 200.144 kb on + strand, within Pf1N1B4_5759 at 200.382 kb on - strand at 200.489 kb on + strand at 200.615 kb on + strand at 200.616 kb on - strand at 200.640 kb on + strand at 200.641 kb on - strand at 200.641 kb on - strand at 200.770 kb on + strand, within Pf1N1B4_5760 at 200.770 kb on + strand, within Pf1N1B4_5760 at 200.770 kb on + strand, within Pf1N1B4_5760 at 201.015 kb on - strand at 201.015 kb on - strand, within Pf1N1B4_5760 at 201.015 kb on - strand, within Pf1N1B4_5760 at 201.015 kb on - strand, within Pf1N1B4_5760 at 201.018 kb on + strand, within Pf1N1B4_5760 at 201.087 kb on + strand, within Pf1N1B4_5760 at 201.330 kb on - strand, within Pf1N1B4_5761
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM remove 198,369 + +0.4 198,837 + Pf1N1B4_5758 0.85 +1.2 199,167 + +0.4 199,193 - +0.2 199,243 - -1.6 199,251 - +0.0 199,515 - Pf1N1B4_5759 0.23 +1.4 199,553 + +0.9 199,554 - -1.6 199,554 - -0.6 199,669 - Pf1N1B4_5759 0.34 -0.4 199,887 - Pf1N1B4_5759 0.49 +0.4 199,887 - Pf1N1B4_5759 0.49 +2.3 199,887 - Pf1N1B4_5759 0.49 -0.1 200,010 - Pf1N1B4_5759 0.58 +3.3 200,043 - Pf1N1B4_5759 0.60 +0.4 200,144 + Pf1N1B4_5759 0.67 -0.6 200,382 - +2.4 200,489 + -0.6 200,615 + -1.1 200,616 - +0.8 200,640 + -1.9 200,641 - -1.4 200,641 - -0.5 200,770 + Pf1N1B4_5760 0.26 +0.1 200,770 + Pf1N1B4_5760 0.26 -0.9 200,770 + Pf1N1B4_5760 0.26 +0.6 201,015 - +1.8 201,015 - Pf1N1B4_5760 0.66 -0.4 201,015 - Pf1N1B4_5760 0.66 +0.4 201,015 - Pf1N1B4_5760 0.66 -1.3 201,018 + Pf1N1B4_5760 0.66 +0.4 201,087 + Pf1N1B4_5760 0.78 -1.4 201,330 - Pf1N1B4_5761 0.11 -0.8
Or see this region's nucleotide sequence