Experiment: 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4819 and Pf1N1B4_4820 are separated by 65 nucleotides Pf1N1B4_4820 and Pf1N1B4_4821 are separated by 17 nucleotides Pf1N1B4_4821 and Pf1N1B4_4822 overlap by 20 nucleotides Pf1N1B4_4822 and Pf1N1B4_4823 overlap by 4 nucleotides
Pf1N1B4_4819 - Multidrug resistance protein B, at 5,322,863 to 5,324,107
_4819
Pf1N1B4_4820 - ortholog of Bordetella pertussis (BX470248) BP2750, at 5,324,173 to 5,324,727
_4820
Pf1N1B4_4821 - Paraquat-inducible protein B, at 5,324,745 to 5,326,400
_4821
Pf1N1B4_4822 - Paraquat-inducible protein A, at 5,326,381 to 5,327,061
_4822
Pf1N1B4_4823 - Paraquat-inducible protein A, at 5,327,058 to 5,327,654
_4823
Position (kb) 5324
5325
5326
5327 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5323.933 kb on - strand, within Pf1N1B4_4819 at 5324.058 kb on + strand at 5324.059 kb on - strand at 5324.073 kb on - strand at 5324.137 kb on + strand at 5324.138 kb on - strand at 5324.138 kb on - strand at 5324.379 kb on - strand, within Pf1N1B4_4820 at 5324.535 kb on + strand, within Pf1N1B4_4820 at 5324.687 kb on - strand at 5325.518 kb on - strand, within Pf1N1B4_4821 at 5325.848 kb on - strand, within Pf1N1B4_4821 at 5325.848 kb on - strand at 5325.919 kb on + strand, within Pf1N1B4_4821 at 5325.998 kb on - strand, within Pf1N1B4_4821 at 5325.998 kb on - strand, within Pf1N1B4_4821 at 5326.272 kb on + strand at 5326.273 kb on - strand at 5326.498 kb on + strand, within Pf1N1B4_4822 at 5326.499 kb on - strand, within Pf1N1B4_4822 at 5326.499 kb on - strand, within Pf1N1B4_4822 at 5326.761 kb on + strand, within Pf1N1B4_4822 at 5326.883 kb on + strand, within Pf1N1B4_4822 at 5326.883 kb on + strand at 5326.884 kb on - strand, within Pf1N1B4_4822 at 5326.908 kb on - strand, within Pf1N1B4_4822 at 5327.061 kb on + strand at 5327.082 kb on + strand at 5327.083 kb on - strand at 5327.151 kb on + strand, within Pf1N1B4_4823 at 5327.154 kb on + strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.155 kb on - strand, within Pf1N1B4_4823 at 5327.369 kb on + strand, within Pf1N1B4_4823
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM remove 5,323,933 - Pf1N1B4_4819 0.86 -0.8 5,324,058 + +0.2 5,324,059 - +0.7 5,324,073 - +0.4 5,324,137 + -0.0 5,324,138 - +0.5 5,324,138 - -0.8 5,324,379 - Pf1N1B4_4820 0.37 -0.3 5,324,535 + Pf1N1B4_4820 0.65 -0.1 5,324,687 - -0.0 5,325,518 - Pf1N1B4_4821 0.47 +0.2 5,325,848 - Pf1N1B4_4821 0.67 -0.2 5,325,848 - +1.2 5,325,919 + Pf1N1B4_4821 0.71 +0.6 5,325,998 - Pf1N1B4_4821 0.76 +0.8 5,325,998 - Pf1N1B4_4821 0.76 +0.7 5,326,272 + -0.1 5,326,273 - -2.1 5,326,498 + Pf1N1B4_4822 0.17 +0.4 5,326,499 - Pf1N1B4_4822 0.17 -1.2 5,326,499 - Pf1N1B4_4822 0.17 -0.8 5,326,761 + Pf1N1B4_4822 0.56 +2.6 5,326,883 + Pf1N1B4_4822 0.74 +0.7 5,326,883 + -0.2 5,326,884 - Pf1N1B4_4822 0.74 -0.3 5,326,908 - Pf1N1B4_4822 0.77 -0.0 5,327,061 + -0.8 5,327,082 + -1.2 5,327,083 - +0.2 5,327,151 + Pf1N1B4_4823 0.16 +1.2 5,327,154 + Pf1N1B4_4823 0.16 +0.7 5,327,155 - Pf1N1B4_4823 0.16 -1.3 5,327,155 - Pf1N1B4_4823 0.16 -0.8 5,327,155 - Pf1N1B4_4823 0.16 -1.8 5,327,155 - Pf1N1B4_4823 0.16 -0.7 5,327,369 + Pf1N1B4_4823 0.52 +0.2
Or see this region's nucleotide sequence