Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4549

Experiment: 5-Hydroxymethylfurfural 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4548 and Pf1N1B4_4549 are separated by 58 nucleotidesPf1N1B4_4549 and Pf1N1B4_4550 are separated by 1 nucleotides Pf1N1B4_4548 - Acyl carrier protein, putative, at 5,016,496 to 5,017,068 _4548 Pf1N1B4_4549 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41), at 5,017,127 to 5,018,347 _4549 Pf1N1B4_4550 - beta-ketoacyl synthase, putative, at 5,018,349 to 5,019,431 _4550 Position (kb) 5017 5018 5019Strain fitness (log2 ratio) -1 0 1 2at 5016.283 kb on - strandat 5016.407 kb on + strandat 5016.408 kb on - strandat 5016.457 kb on + strandat 5016.460 kb on + strandat 5016.461 kb on - strandat 5016.461 kb on - strandat 5016.464 kb on + strandat 5016.465 kb on - strandat 5016.465 kb on - strandat 5016.494 kb on - strandat 5016.528 kb on + strandat 5016.594 kb on + strand, within Pf1N1B4_4548at 5016.594 kb on + strand, within Pf1N1B4_4548at 5016.667 kb on + strand, within Pf1N1B4_4548at 5016.667 kb on + strand, within Pf1N1B4_4548at 5017.097 kb on + strandat 5017.098 kb on - strandat 5017.098 kb on - strandat 5017.236 kb on - strandat 5017.403 kb on - strand, within Pf1N1B4_4549at 5017.703 kb on + strandat 5018.073 kb on + strand, within Pf1N1B4_4549at 5018.074 kb on - strand, within Pf1N1B4_4549at 5018.213 kb on + strandat 5018.214 kb on - strandat 5018.355 kb on - strandat 5018.363 kb on + strandat 5018.572 kb on - strand, within Pf1N1B4_4550at 5018.657 kb on - strand, within Pf1N1B4_4550at 5018.716 kb on + strand, within Pf1N1B4_4550at 5018.738 kb on + strand, within Pf1N1B4_4550at 5018.739 kb on - strand, within Pf1N1B4_4550at 5018.930 kb on + strand, within Pf1N1B4_4550at 5018.950 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM
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5,016,283 - -0.3
5,016,407 + -0.4
5,016,408 - -0.3
5,016,457 + -0.4
5,016,460 + +1.6
5,016,461 - +0.2
5,016,461 - -0.3
5,016,464 + +0.6
5,016,465 - -1.0
5,016,465 - -0.3
5,016,494 - +1.0
5,016,528 + +0.9
5,016,594 + Pf1N1B4_4548 0.17 +2.3
5,016,594 + Pf1N1B4_4548 0.17 +0.3
5,016,667 + Pf1N1B4_4548 0.30 -0.3
5,016,667 + Pf1N1B4_4548 0.30 +0.3
5,017,097 + +1.2
5,017,098 - +0.1
5,017,098 - +0.3
5,017,236 - -1.1
5,017,403 - Pf1N1B4_4549 0.23 -1.4
5,017,703 + -0.7
5,018,073 + Pf1N1B4_4549 0.77 -1.0
5,018,074 - Pf1N1B4_4549 0.78 +0.5
5,018,213 + -0.3
5,018,214 - +0.3
5,018,355 - -0.3
5,018,363 + -0.1
5,018,572 - Pf1N1B4_4550 0.21 -0.7
5,018,657 - Pf1N1B4_4550 0.28 +1.9
5,018,716 + Pf1N1B4_4550 0.34 +0.9
5,018,738 + Pf1N1B4_4550 0.36 +0.7
5,018,739 - Pf1N1B4_4550 0.36 -1.5
5,018,930 + Pf1N1B4_4550 0.54 -0.3
5,018,950 - -0.7

Or see this region's nucleotide sequence