Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3732

Experiment: 5-Hydroxymethylfurfural 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5225 and Pf1N1B4_5226 are separated by 21 nucleotidesPf1N1B4_5226 and Pf1N1B4_5227 are separated by 190 nucleotidesPf1N1B4_5227 and Pf1N1B4_5228 are separated by 22 nucleotidesPf1N1B4_5228 and Pf1N1B4_3732 are separated by 315 nucleotidesPf1N1B4_3732 and Pf1N1B4_3733 are separated by 3 nucleotides Pf1N1B4_5225 - tRNA-Val-TAC, at 4,141,941 to 4,142,013 _5225 Pf1N1B4_5226 - tRNA-Asp-GTC, at 4,142,035 to 4,142,108 _5226 Pf1N1B4_5227 - tRNA-Val-TAC, at 4,142,299 to 4,142,371 _5227 Pf1N1B4_5228 - tRNA-Asp-GTC, at 4,142,394 to 4,142,467 _5228 Pf1N1B4_3732 - Catalase (EC 1.11.1.6), at 4,142,783 to 4,143,919 _3732 Pf1N1B4_3733 - FIG00959155: hypothetical protein, at 4,143,923 to 4,145,755 _3733 Position (kb) 4142 4143 4144Strain fitness (log2 ratio) -2 -1 0 1 2at 4141.800 kb on + strandat 4141.800 kb on + strandat 4141.801 kb on - strandat 4141.815 kb on + strandat 4141.816 kb on - strandat 4141.835 kb on - strandat 4141.850 kb on + strandat 4142.377 kb on + strandat 4142.377 kb on + strandat 4142.471 kb on + strandat 4142.626 kb on - strandat 4142.665 kb on + strandat 4142.752 kb on + strandat 4142.752 kb on + strandat 4142.752 kb on + strandat 4142.771 kb on + strandat 4142.771 kb on + strandat 4142.772 kb on - strandat 4142.772 kb on - strandat 4142.772 kb on - strandat 4142.772 kb on - strandat 4142.829 kb on + strandat 4142.829 kb on + strandat 4142.829 kb on + strandat 4142.829 kb on + strandat 4142.829 kb on + strandat 4142.830 kb on - strandat 4142.830 kb on - strandat 4142.830 kb on - strandat 4142.830 kb on - strandat 4142.830 kb on - strandat 4142.830 kb on - strandat 4142.870 kb on - strandat 4143.030 kb on + strandat 4143.030 kb on + strand, within Pf1N1B4_3732at 4143.030 kb on + strand, within Pf1N1B4_3732at 4143.030 kb on + strand, within Pf1N1B4_3732at 4143.030 kb on + strand, within Pf1N1B4_3732at 4143.030 kb on + strand, within Pf1N1B4_3732at 4143.031 kb on - strandat 4143.031 kb on - strand, within Pf1N1B4_3732at 4143.031 kb on - strand, within Pf1N1B4_3732at 4143.031 kb on - strand, within Pf1N1B4_3732at 4143.031 kb on - strand, within Pf1N1B4_3732at 4143.031 kb on - strand, within Pf1N1B4_3732at 4143.059 kb on + strand, within Pf1N1B4_3732at 4143.060 kb on - strandat 4143.196 kb on + strand, within Pf1N1B4_3732at 4143.202 kb on + strand, within Pf1N1B4_3732at 4143.237 kb on + strand, within Pf1N1B4_3732at 4143.237 kb on + strand, within Pf1N1B4_3732at 4143.384 kb on + strand, within Pf1N1B4_3732at 4143.491 kb on + strand, within Pf1N1B4_3732at 4143.491 kb on + strand, within Pf1N1B4_3732at 4143.611 kb on + strand, within Pf1N1B4_3732at 4143.611 kb on + strand, within Pf1N1B4_3732at 4143.612 kb on - strand, within Pf1N1B4_3732at 4143.721 kb on + strand, within Pf1N1B4_3732at 4143.722 kb on - strandat 4143.725 kb on + strand, within Pf1N1B4_3732at 4143.725 kb on + strand, within Pf1N1B4_3732at 4143.726 kb on - strandat 4144.153 kb on + strand, within Pf1N1B4_3733at 4144.154 kb on - strand, within Pf1N1B4_3733at 4144.161 kb on + strand, within Pf1N1B4_3733at 4144.179 kb on + strand, within Pf1N1B4_3733at 4144.179 kb on + strand, within Pf1N1B4_3733at 4144.179 kb on + strand, within Pf1N1B4_3733at 4144.179 kb on + strand, within Pf1N1B4_3733at 4144.180 kb on - strand, within Pf1N1B4_3733at 4144.180 kb on - strand, within Pf1N1B4_3733at 4144.180 kb on - strand, within Pf1N1B4_3733at 4144.293 kb on + strand, within Pf1N1B4_3733at 4144.293 kb on + strand, within Pf1N1B4_3733at 4144.293 kb on + strandat 4144.294 kb on - strand, within Pf1N1B4_3733at 4144.297 kb on + strand, within Pf1N1B4_3733at 4144.297 kb on + strand, within Pf1N1B4_3733at 4144.297 kb on + strand, within Pf1N1B4_3733at 4144.407 kb on + strand, within Pf1N1B4_3733at 4144.407 kb on + strand, within Pf1N1B4_3733at 4144.408 kb on - strand, within Pf1N1B4_3733at 4144.441 kb on + strand, within Pf1N1B4_3733at 4144.475 kb on + strand, within Pf1N1B4_3733at 4144.475 kb on + strand, within Pf1N1B4_3733at 4144.475 kb on + strand, within Pf1N1B4_3733at 4144.476 kb on - strand, within Pf1N1B4_3733at 4144.476 kb on - strand, within Pf1N1B4_3733at 4144.476 kb on - strand, within Pf1N1B4_3733at 4144.476 kb on - strand, within Pf1N1B4_3733at 4144.476 kb on - strand, within Pf1N1B4_3733at 4144.476 kb on - strand, within Pf1N1B4_3733

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM
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4,141,800 + -1.6
4,141,800 + +1.8
4,141,801 - +0.6
4,141,815 + -0.8
4,141,816 - -1.0
4,141,835 - +0.0
4,141,850 + -0.1
4,142,377 + +2.2
4,142,377 + +1.0
4,142,471 + +0.5
4,142,626 - -0.4
4,142,665 + -1.0
4,142,752 + -0.6
4,142,752 + -2.0
4,142,752 + +1.2
4,142,771 + +2.2
4,142,771 + -0.5
4,142,772 - +1.2
4,142,772 - +1.6
4,142,772 - -0.4
4,142,772 - +0.3
4,142,829 + -0.5
4,142,829 + -0.7
4,142,829 + -0.0
4,142,829 + +0.9
4,142,829 + +0.2
4,142,830 - +0.5
4,142,830 - -0.0
4,142,830 - -0.4
4,142,830 - -0.3
4,142,830 - +2.0
4,142,830 - -0.6
4,142,870 - -0.4
4,143,030 + +0.0
4,143,030 + Pf1N1B4_3732 0.22 +0.3
4,143,030 + Pf1N1B4_3732 0.22 -0.4
4,143,030 + Pf1N1B4_3732 0.22 +0.9
4,143,030 + Pf1N1B4_3732 0.22 -2.5
4,143,030 + Pf1N1B4_3732 0.22 +0.2
4,143,031 - -0.7
4,143,031 - Pf1N1B4_3732 0.22 +1.2
4,143,031 - Pf1N1B4_3732 0.22 -0.1
4,143,031 - Pf1N1B4_3732 0.22 +0.9
4,143,031 - Pf1N1B4_3732 0.22 -0.2
4,143,031 - Pf1N1B4_3732 0.22 -0.4
4,143,059 + Pf1N1B4_3732 0.24 -1.0
4,143,060 - -1.4
4,143,196 + Pf1N1B4_3732 0.36 +0.0
4,143,202 + Pf1N1B4_3732 0.37 -0.7
4,143,237 + Pf1N1B4_3732 0.40 -0.8
4,143,237 + Pf1N1B4_3732 0.40 -0.3
4,143,384 + Pf1N1B4_3732 0.53 +1.3
4,143,491 + Pf1N1B4_3732 0.62 +1.8
4,143,491 + Pf1N1B4_3732 0.62 +1.0
4,143,611 + Pf1N1B4_3732 0.73 +0.0
4,143,611 + Pf1N1B4_3732 0.73 +0.3
4,143,612 - Pf1N1B4_3732 0.73 -1.0
4,143,721 + Pf1N1B4_3732 0.82 -1.0
4,143,722 - -0.4
4,143,725 + Pf1N1B4_3732 0.83 +0.0
4,143,725 + Pf1N1B4_3732 0.83 +0.9
4,143,726 - -0.4
4,144,153 + Pf1N1B4_3733 0.13 -0.4
4,144,154 - Pf1N1B4_3733 0.13 +1.0
4,144,161 + Pf1N1B4_3733 0.13 +1.1
4,144,179 + Pf1N1B4_3733 0.14 -0.4
4,144,179 + Pf1N1B4_3733 0.14 -0.1
4,144,179 + Pf1N1B4_3733 0.14 -1.2
4,144,179 + Pf1N1B4_3733 0.14 +1.1
4,144,180 - Pf1N1B4_3733 0.14 +0.0
4,144,180 - Pf1N1B4_3733 0.14 +1.4
4,144,180 - Pf1N1B4_3733 0.14 +0.0
4,144,293 + Pf1N1B4_3733 0.20 -0.4
4,144,293 + Pf1N1B4_3733 0.20 +0.6
4,144,293 + +1.0
4,144,294 - Pf1N1B4_3733 0.20 +2.0
4,144,297 + Pf1N1B4_3733 0.20 +0.1
4,144,297 + Pf1N1B4_3733 0.20 +0.1
4,144,297 + Pf1N1B4_3733 0.20 +0.8
4,144,407 + Pf1N1B4_3733 0.26 -0.4
4,144,407 + Pf1N1B4_3733 0.26 -0.5
4,144,408 - Pf1N1B4_3733 0.26 +0.4
4,144,441 + Pf1N1B4_3733 0.28 +0.6
4,144,475 + Pf1N1B4_3733 0.30 +0.8
4,144,475 + Pf1N1B4_3733 0.30 +0.4
4,144,475 + Pf1N1B4_3733 0.30 -0.4
4,144,476 - Pf1N1B4_3733 0.30 +0.4
4,144,476 - Pf1N1B4_3733 0.30 +1.4
4,144,476 - Pf1N1B4_3733 0.30 -0.2
4,144,476 - Pf1N1B4_3733 0.30 -1.4
4,144,476 - Pf1N1B4_3733 0.30 -1.4
4,144,476 - Pf1N1B4_3733 0.30 -0.7

Or see this region's nucleotide sequence