Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2791

Experiment: 5-Hydroxymethylfurfural 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2790 and Pf1N1B4_2791 are separated by 160 nucleotidesPf1N1B4_2791 and Pf1N1B4_2792 are separated by 201 nucleotidesPf1N1B4_2792 and Pf1N1B4_2793 are separated by 130 nucleotides Pf1N1B4_2790 - FIG00960839: hypothetical protein, at 3,135,125 to 3,136,954 _2790 Pf1N1B4_2791 - Putative inner membrane protein (Fragment), at 3,137,115 to 3,137,603 _2791 Pf1N1B4_2792 - FIG00953454: hypothetical protein, at 3,137,805 to 3,138,101 _2792 Pf1N1B4_2793 - FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8), at 3,138,232 to 3,138,849 _2793 Position (kb) 3137 3138Strain fitness (log2 ratio) -2 -1 0 1 2at 3136.160 kb on + strand, within Pf1N1B4_2790at 3136.160 kb on + strand, within Pf1N1B4_2790at 3136.160 kb on + strand, within Pf1N1B4_2790at 3136.160 kb on + strand, within Pf1N1B4_2790at 3136.160 kb on + strand, within Pf1N1B4_2790at 3136.160 kb on + strand, within Pf1N1B4_2790at 3136.160 kb on + strand, within Pf1N1B4_2790at 3136.160 kb on + strand, within Pf1N1B4_2790at 3136.161 kb on - strand, within Pf1N1B4_2790at 3136.161 kb on - strand, within Pf1N1B4_2790at 3136.161 kb on - strand, within Pf1N1B4_2790at 3136.161 kb on - strand, within Pf1N1B4_2790at 3136.161 kb on - strandat 3136.170 kb on - strand, within Pf1N1B4_2790at 3136.170 kb on - strand, within Pf1N1B4_2790at 3136.215 kb on + strand, within Pf1N1B4_2790at 3136.215 kb on + strand, within Pf1N1B4_2790at 3136.215 kb on + strand, within Pf1N1B4_2790at 3136.219 kb on + strand, within Pf1N1B4_2790at 3136.219 kb on + strand, within Pf1N1B4_2790at 3136.219 kb on + strand, within Pf1N1B4_2790at 3136.219 kb on + strand, within Pf1N1B4_2790at 3136.219 kb on + strand, within Pf1N1B4_2790at 3136.220 kb on - strand, within Pf1N1B4_2790at 3136.220 kb on - strand, within Pf1N1B4_2790at 3136.302 kb on + strand, within Pf1N1B4_2790at 3136.302 kb on + strand, within Pf1N1B4_2790at 3136.398 kb on + strand, within Pf1N1B4_2790at 3136.398 kb on + strand, within Pf1N1B4_2790at 3136.398 kb on + strand, within Pf1N1B4_2790at 3136.628 kb on + strand, within Pf1N1B4_2790at 3136.628 kb on + strand, within Pf1N1B4_2790at 3136.629 kb on - strand, within Pf1N1B4_2790at 3136.629 kb on - strand, within Pf1N1B4_2790at 3136.629 kb on - strand, within Pf1N1B4_2790at 3136.650 kb on + strand, within Pf1N1B4_2790at 3136.650 kb on + strand, within Pf1N1B4_2790at 3136.650 kb on + strand, within Pf1N1B4_2790at 3136.650 kb on + strand, within Pf1N1B4_2790at 3136.650 kb on + strand, within Pf1N1B4_2790at 3136.650 kb on + strand, within Pf1N1B4_2790at 3136.650 kb on + strand, within Pf1N1B4_2790at 3136.650 kb on + strand, within Pf1N1B4_2790at 3136.651 kb on - strand, within Pf1N1B4_2790at 3136.651 kb on - strand, within Pf1N1B4_2790at 3136.763 kb on + strand, within Pf1N1B4_2790at 3136.763 kb on + strand, within Pf1N1B4_2790at 3136.763 kb on + strand, within Pf1N1B4_2790at 3136.764 kb on - strand, within Pf1N1B4_2790at 3137.062 kb on + strandat 3137.062 kb on + strandat 3137.063 kb on - strandat 3137.077 kb on - strandat 3137.078 kb on + strandat 3137.078 kb on + strandat 3137.079 kb on - strandat 3137.142 kb on + strandat 3137.142 kb on + strandat 3137.142 kb on + strandat 3137.142 kb on + strandat 3137.142 kb on + strandat 3137.143 kb on - strandat 3137.143 kb on - strandat 3137.172 kb on + strand, within Pf1N1B4_2791at 3137.173 kb on - strand, within Pf1N1B4_2791at 3137.243 kb on + strand, within Pf1N1B4_2791at 3137.529 kb on + strand, within Pf1N1B4_2791at 3137.529 kb on + strand, within Pf1N1B4_2791at 3137.529 kb on + strand, within Pf1N1B4_2791at 3137.742 kb on + strandat 3137.742 kb on + strandat 3137.742 kb on + strandat 3137.742 kb on + strandat 3137.742 kb on + strandat 3137.743 kb on - strandat 3137.743 kb on - strandat 3137.743 kb on - strandat 3137.769 kb on + strandat 3137.769 kb on + strandat 3137.769 kb on + strandat 3137.769 kb on + strandat 3137.769 kb on + strandat 3137.769 kb on + strandat 3137.770 kb on - strandat 3137.770 kb on - strandat 3137.770 kb on - strandat 3137.770 kb on - strandat 3137.770 kb on - strandat 3137.829 kb on + strandat 3137.829 kb on + strandat 3137.829 kb on + strandat 3137.829 kb on + strandat 3137.830 kb on - strandat 3137.830 kb on - strandat 3137.830 kb on - strandat 3137.887 kb on - strand, within Pf1N1B4_2792at 3137.947 kb on + strand, within Pf1N1B4_2792at 3137.948 kb on - strand, within Pf1N1B4_2792at 3137.948 kb on - strand, within Pf1N1B4_2792at 3137.948 kb on - strand, within Pf1N1B4_2792at 3137.948 kb on - strand, within Pf1N1B4_2792at 3138.023 kb on + strand, within Pf1N1B4_2792at 3138.023 kb on + strand, within Pf1N1B4_2792at 3138.023 kb on + strand, within Pf1N1B4_2792at 3138.023 kb on + strand, within Pf1N1B4_2792at 3138.023 kb on + strand, within Pf1N1B4_2792at 3138.023 kb on + strand, within Pf1N1B4_2792at 3138.076 kb on + strandat 3138.142 kb on - strandat 3138.242 kb on + strandat 3138.243 kb on - strandat 3138.243 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM
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3,136,160 + Pf1N1B4_2790 0.57 +1.0
3,136,160 + Pf1N1B4_2790 0.57 -0.6
3,136,160 + Pf1N1B4_2790 0.57 +0.2
3,136,160 + Pf1N1B4_2790 0.57 -0.0
3,136,160 + Pf1N1B4_2790 0.57 +1.0
3,136,160 + Pf1N1B4_2790 0.57 -0.4
3,136,160 + Pf1N1B4_2790 0.57 +0.5
3,136,160 + Pf1N1B4_2790 0.57 -0.7
3,136,161 - Pf1N1B4_2790 0.57 -1.8
3,136,161 - Pf1N1B4_2790 0.57 -0.0
3,136,161 - Pf1N1B4_2790 0.57 +0.0
3,136,161 - Pf1N1B4_2790 0.57 +1.0
3,136,161 - +2.0
3,136,170 - Pf1N1B4_2790 0.57 +1.0
3,136,170 - Pf1N1B4_2790 0.57 -1.0
3,136,215 + Pf1N1B4_2790 0.60 +0.6
3,136,215 + Pf1N1B4_2790 0.60 -0.8
3,136,215 + Pf1N1B4_2790 0.60 -1.6
3,136,219 + Pf1N1B4_2790 0.60 +0.2
3,136,219 + Pf1N1B4_2790 0.60 +0.2
3,136,219 + Pf1N1B4_2790 0.60 -0.6
3,136,219 + Pf1N1B4_2790 0.60 +1.5
3,136,219 + Pf1N1B4_2790 0.60 +0.3
3,136,220 - Pf1N1B4_2790 0.60 -0.6
3,136,220 - Pf1N1B4_2790 0.60 +1.0
3,136,302 + Pf1N1B4_2790 0.64 -0.0
3,136,302 + Pf1N1B4_2790 0.64 +1.3
3,136,398 + Pf1N1B4_2790 0.70 -0.0
3,136,398 + Pf1N1B4_2790 0.70 -2.0
3,136,398 + Pf1N1B4_2790 0.70 +0.1
3,136,628 + Pf1N1B4_2790 0.82 -1.8
3,136,628 + Pf1N1B4_2790 0.82 +0.4
3,136,629 - Pf1N1B4_2790 0.82 +0.6
3,136,629 - Pf1N1B4_2790 0.82 +0.8
3,136,629 - Pf1N1B4_2790 0.82 +0.1
3,136,650 + Pf1N1B4_2790 0.83 +0.1
3,136,650 + Pf1N1B4_2790 0.83 +0.2
3,136,650 + Pf1N1B4_2790 0.83 -0.7
3,136,650 + Pf1N1B4_2790 0.83 -0.6
3,136,650 + Pf1N1B4_2790 0.83 +0.4
3,136,650 + Pf1N1B4_2790 0.83 +0.6
3,136,650 + Pf1N1B4_2790 0.83 -0.6
3,136,650 + Pf1N1B4_2790 0.83 +0.4
3,136,651 - Pf1N1B4_2790 0.83 +2.0
3,136,651 - Pf1N1B4_2790 0.83 +0.2
3,136,763 + Pf1N1B4_2790 0.90 -0.3
3,136,763 + Pf1N1B4_2790 0.90 -0.6
3,136,763 + Pf1N1B4_2790 0.90 +1.6
3,136,764 - Pf1N1B4_2790 0.90 +2.0
3,137,062 + -1.0
3,137,062 + -0.1
3,137,063 - +1.6
3,137,077 - +0.5
3,137,078 + +0.1
3,137,078 + -0.8
3,137,079 - +0.3
3,137,142 + -0.6
3,137,142 + -0.6
3,137,142 + -0.0
3,137,142 + -1.8
3,137,142 + +0.4
3,137,143 - -2.2
3,137,143 - +0.2
3,137,172 + Pf1N1B4_2791 0.12 -0.4
3,137,173 - Pf1N1B4_2791 0.12 -1.8
3,137,243 + Pf1N1B4_2791 0.26 -1.4
3,137,529 + Pf1N1B4_2791 0.85 -0.4
3,137,529 + Pf1N1B4_2791 0.85 -0.6
3,137,529 + Pf1N1B4_2791 0.85 -0.8
3,137,742 + +0.6
3,137,742 + +1.6
3,137,742 + +1.0
3,137,742 + -0.4
3,137,742 + -0.0
3,137,743 - -1.4
3,137,743 - +1.8
3,137,743 - +1.0
3,137,769 + +0.1
3,137,769 + -1.7
3,137,769 + -0.6
3,137,769 + -0.6
3,137,769 + +0.2
3,137,769 + +2.0
3,137,770 - -1.6
3,137,770 - +1.0
3,137,770 - +0.1
3,137,770 - +0.1
3,137,770 - +0.5
3,137,829 + +0.7
3,137,829 + -0.1
3,137,829 + +2.0
3,137,829 + -1.2
3,137,830 - -1.0
3,137,830 - -1.0
3,137,830 - +1.0
3,137,887 - Pf1N1B4_2792 0.28 +1.0
3,137,947 + Pf1N1B4_2792 0.48 +0.2
3,137,948 - Pf1N1B4_2792 0.48 -0.4
3,137,948 - Pf1N1B4_2792 0.48 -0.8
3,137,948 - Pf1N1B4_2792 0.48 +1.2
3,137,948 - Pf1N1B4_2792 0.48 -0.6
3,138,023 + Pf1N1B4_2792 0.73 +0.6
3,138,023 + Pf1N1B4_2792 0.73 -0.8
3,138,023 + Pf1N1B4_2792 0.73 +0.3
3,138,023 + Pf1N1B4_2792 0.73 -0.8
3,138,023 + Pf1N1B4_2792 0.73 -1.0
3,138,023 + Pf1N1B4_2792 0.73 +0.2
3,138,076 + -1.0
3,138,142 - -1.3
3,138,242 + -2.0
3,138,243 - -0.2
3,138,243 - -0.0

Or see this region's nucleotide sequence