Experiment: 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2790 and Pf1N1B4_2791 are separated by 160 nucleotides Pf1N1B4_2791 and Pf1N1B4_2792 are separated by 201 nucleotides Pf1N1B4_2792 and Pf1N1B4_2793 are separated by 130 nucleotides
Pf1N1B4_2790 - FIG00960839: hypothetical protein, at 3,135,125 to 3,136,954
_2790
Pf1N1B4_2791 - Putative inner membrane protein (Fragment), at 3,137,115 to 3,137,603
_2791
Pf1N1B4_2792 - FIG00953454: hypothetical protein, at 3,137,805 to 3,138,101
_2792
Pf1N1B4_2793 - FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8), at 3,138,232 to 3,138,849
_2793
Position (kb)
3137
3138 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3136.160 kb on + strand, within Pf1N1B4_2790 at 3136.160 kb on + strand, within Pf1N1B4_2790 at 3136.160 kb on + strand, within Pf1N1B4_2790 at 3136.160 kb on + strand, within Pf1N1B4_2790 at 3136.160 kb on + strand, within Pf1N1B4_2790 at 3136.160 kb on + strand, within Pf1N1B4_2790 at 3136.160 kb on + strand, within Pf1N1B4_2790 at 3136.160 kb on + strand, within Pf1N1B4_2790 at 3136.161 kb on - strand, within Pf1N1B4_2790 at 3136.161 kb on - strand, within Pf1N1B4_2790 at 3136.161 kb on - strand, within Pf1N1B4_2790 at 3136.161 kb on - strand, within Pf1N1B4_2790 at 3136.161 kb on - strand at 3136.170 kb on - strand, within Pf1N1B4_2790 at 3136.170 kb on - strand, within Pf1N1B4_2790 at 3136.215 kb on + strand, within Pf1N1B4_2790 at 3136.215 kb on + strand, within Pf1N1B4_2790 at 3136.215 kb on + strand, within Pf1N1B4_2790 at 3136.219 kb on + strand, within Pf1N1B4_2790 at 3136.219 kb on + strand, within Pf1N1B4_2790 at 3136.219 kb on + strand, within Pf1N1B4_2790 at 3136.219 kb on + strand, within Pf1N1B4_2790 at 3136.219 kb on + strand, within Pf1N1B4_2790 at 3136.220 kb on - strand, within Pf1N1B4_2790 at 3136.220 kb on - strand, within Pf1N1B4_2790 at 3136.302 kb on + strand, within Pf1N1B4_2790 at 3136.302 kb on + strand, within Pf1N1B4_2790 at 3136.398 kb on + strand, within Pf1N1B4_2790 at 3136.398 kb on + strand, within Pf1N1B4_2790 at 3136.398 kb on + strand, within Pf1N1B4_2790 at 3136.628 kb on + strand, within Pf1N1B4_2790 at 3136.628 kb on + strand, within Pf1N1B4_2790 at 3136.629 kb on - strand, within Pf1N1B4_2790 at 3136.629 kb on - strand, within Pf1N1B4_2790 at 3136.629 kb on - strand, within Pf1N1B4_2790 at 3136.650 kb on + strand, within Pf1N1B4_2790 at 3136.650 kb on + strand, within Pf1N1B4_2790 at 3136.650 kb on + strand, within Pf1N1B4_2790 at 3136.650 kb on + strand, within Pf1N1B4_2790 at 3136.650 kb on + strand, within Pf1N1B4_2790 at 3136.650 kb on + strand, within Pf1N1B4_2790 at 3136.650 kb on + strand, within Pf1N1B4_2790 at 3136.650 kb on + strand, within Pf1N1B4_2790 at 3136.651 kb on - strand, within Pf1N1B4_2790 at 3136.651 kb on - strand, within Pf1N1B4_2790 at 3136.763 kb on + strand, within Pf1N1B4_2790 at 3136.763 kb on + strand, within Pf1N1B4_2790 at 3136.763 kb on + strand, within Pf1N1B4_2790 at 3136.764 kb on - strand, within Pf1N1B4_2790 at 3137.062 kb on + strand at 3137.062 kb on + strand at 3137.063 kb on - strand at 3137.077 kb on - strand at 3137.078 kb on + strand at 3137.078 kb on + strand at 3137.079 kb on - strand at 3137.142 kb on + strand at 3137.142 kb on + strand at 3137.142 kb on + strand at 3137.142 kb on + strand at 3137.142 kb on + strand at 3137.143 kb on - strand at 3137.143 kb on - strand at 3137.172 kb on + strand, within Pf1N1B4_2791 at 3137.173 kb on - strand, within Pf1N1B4_2791 at 3137.243 kb on + strand, within Pf1N1B4_2791 at 3137.529 kb on + strand, within Pf1N1B4_2791 at 3137.529 kb on + strand, within Pf1N1B4_2791 at 3137.529 kb on + strand, within Pf1N1B4_2791 at 3137.742 kb on + strand at 3137.742 kb on + strand at 3137.742 kb on + strand at 3137.742 kb on + strand at 3137.742 kb on + strand at 3137.743 kb on - strand at 3137.743 kb on - strand at 3137.743 kb on - strand at 3137.769 kb on + strand at 3137.769 kb on + strand at 3137.769 kb on + strand at 3137.769 kb on + strand at 3137.769 kb on + strand at 3137.769 kb on + strand at 3137.770 kb on - strand at 3137.770 kb on - strand at 3137.770 kb on - strand at 3137.770 kb on - strand at 3137.770 kb on - strand at 3137.829 kb on + strand at 3137.829 kb on + strand at 3137.829 kb on + strand at 3137.829 kb on + strand at 3137.830 kb on - strand at 3137.830 kb on - strand at 3137.830 kb on - strand at 3137.887 kb on - strand, within Pf1N1B4_2792 at 3137.947 kb on + strand, within Pf1N1B4_2792 at 3137.948 kb on - strand, within Pf1N1B4_2792 at 3137.948 kb on - strand, within Pf1N1B4_2792 at 3137.948 kb on - strand, within Pf1N1B4_2792 at 3137.948 kb on - strand, within Pf1N1B4_2792 at 3138.023 kb on + strand, within Pf1N1B4_2792 at 3138.023 kb on + strand, within Pf1N1B4_2792 at 3138.023 kb on + strand, within Pf1N1B4_2792 at 3138.023 kb on + strand, within Pf1N1B4_2792 at 3138.023 kb on + strand, within Pf1N1B4_2792 at 3138.023 kb on + strand, within Pf1N1B4_2792 at 3138.076 kb on + strand at 3138.142 kb on - strand at 3138.242 kb on + strand at 3138.243 kb on - strand at 3138.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM remove 3,136,160 + Pf1N1B4_2790 0.57 +1.0 3,136,160 + Pf1N1B4_2790 0.57 -0.6 3,136,160 + Pf1N1B4_2790 0.57 +0.2 3,136,160 + Pf1N1B4_2790 0.57 -0.0 3,136,160 + Pf1N1B4_2790 0.57 +1.0 3,136,160 + Pf1N1B4_2790 0.57 -0.4 3,136,160 + Pf1N1B4_2790 0.57 +0.5 3,136,160 + Pf1N1B4_2790 0.57 -0.7 3,136,161 - Pf1N1B4_2790 0.57 -1.8 3,136,161 - Pf1N1B4_2790 0.57 -0.0 3,136,161 - Pf1N1B4_2790 0.57 +0.0 3,136,161 - Pf1N1B4_2790 0.57 +1.0 3,136,161 - +2.0 3,136,170 - Pf1N1B4_2790 0.57 +1.0 3,136,170 - Pf1N1B4_2790 0.57 -1.0 3,136,215 + Pf1N1B4_2790 0.60 +0.6 3,136,215 + Pf1N1B4_2790 0.60 -0.8 3,136,215 + Pf1N1B4_2790 0.60 -1.6 3,136,219 + Pf1N1B4_2790 0.60 +0.2 3,136,219 + Pf1N1B4_2790 0.60 +0.2 3,136,219 + Pf1N1B4_2790 0.60 -0.6 3,136,219 + Pf1N1B4_2790 0.60 +1.5 3,136,219 + Pf1N1B4_2790 0.60 +0.3 3,136,220 - Pf1N1B4_2790 0.60 -0.6 3,136,220 - Pf1N1B4_2790 0.60 +1.0 3,136,302 + Pf1N1B4_2790 0.64 -0.0 3,136,302 + Pf1N1B4_2790 0.64 +1.3 3,136,398 + Pf1N1B4_2790 0.70 -0.0 3,136,398 + Pf1N1B4_2790 0.70 -2.0 3,136,398 + Pf1N1B4_2790 0.70 +0.1 3,136,628 + Pf1N1B4_2790 0.82 -1.8 3,136,628 + Pf1N1B4_2790 0.82 +0.4 3,136,629 - Pf1N1B4_2790 0.82 +0.6 3,136,629 - Pf1N1B4_2790 0.82 +0.8 3,136,629 - Pf1N1B4_2790 0.82 +0.1 3,136,650 + Pf1N1B4_2790 0.83 +0.1 3,136,650 + Pf1N1B4_2790 0.83 +0.2 3,136,650 + Pf1N1B4_2790 0.83 -0.7 3,136,650 + Pf1N1B4_2790 0.83 -0.6 3,136,650 + Pf1N1B4_2790 0.83 +0.4 3,136,650 + Pf1N1B4_2790 0.83 +0.6 3,136,650 + Pf1N1B4_2790 0.83 -0.6 3,136,650 + Pf1N1B4_2790 0.83 +0.4 3,136,651 - Pf1N1B4_2790 0.83 +2.0 3,136,651 - Pf1N1B4_2790 0.83 +0.2 3,136,763 + Pf1N1B4_2790 0.90 -0.3 3,136,763 + Pf1N1B4_2790 0.90 -0.6 3,136,763 + Pf1N1B4_2790 0.90 +1.6 3,136,764 - Pf1N1B4_2790 0.90 +2.0 3,137,062 + -1.0 3,137,062 + -0.1 3,137,063 - +1.6 3,137,077 - +0.5 3,137,078 + +0.1 3,137,078 + -0.8 3,137,079 - +0.3 3,137,142 + -0.6 3,137,142 + -0.6 3,137,142 + -0.0 3,137,142 + -1.8 3,137,142 + +0.4 3,137,143 - -2.2 3,137,143 - +0.2 3,137,172 + Pf1N1B4_2791 0.12 -0.4 3,137,173 - Pf1N1B4_2791 0.12 -1.8 3,137,243 + Pf1N1B4_2791 0.26 -1.4 3,137,529 + Pf1N1B4_2791 0.85 -0.4 3,137,529 + Pf1N1B4_2791 0.85 -0.6 3,137,529 + Pf1N1B4_2791 0.85 -0.8 3,137,742 + +0.6 3,137,742 + +1.6 3,137,742 + +1.0 3,137,742 + -0.4 3,137,742 + -0.0 3,137,743 - -1.4 3,137,743 - +1.8 3,137,743 - +1.0 3,137,769 + +0.1 3,137,769 + -1.7 3,137,769 + -0.6 3,137,769 + -0.6 3,137,769 + +0.2 3,137,769 + +2.0 3,137,770 - -1.6 3,137,770 - +1.0 3,137,770 - +0.1 3,137,770 - +0.1 3,137,770 - +0.5 3,137,829 + +0.7 3,137,829 + -0.1 3,137,829 + +2.0 3,137,829 + -1.2 3,137,830 - -1.0 3,137,830 - -1.0 3,137,830 - +1.0 3,137,887 - Pf1N1B4_2792 0.28 +1.0 3,137,947 + Pf1N1B4_2792 0.48 +0.2 3,137,948 - Pf1N1B4_2792 0.48 -0.4 3,137,948 - Pf1N1B4_2792 0.48 -0.8 3,137,948 - Pf1N1B4_2792 0.48 +1.2 3,137,948 - Pf1N1B4_2792 0.48 -0.6 3,138,023 + Pf1N1B4_2792 0.73 +0.6 3,138,023 + Pf1N1B4_2792 0.73 -0.8 3,138,023 + Pf1N1B4_2792 0.73 +0.3 3,138,023 + Pf1N1B4_2792 0.73 -0.8 3,138,023 + Pf1N1B4_2792 0.73 -1.0 3,138,023 + Pf1N1B4_2792 0.73 +0.2 3,138,076 + -1.0 3,138,142 - -1.3 3,138,242 + -2.0 3,138,243 - -0.2 3,138,243 - -0.0
Or see this region's nucleotide sequence