Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2766

Experiment: 5-Hydroxymethylfurfural 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 2.5 mM
3,104,098	+		Pf1N1B4_2764	0.79	-0.2
3,104,116	+		Pf1N1B4_2764	0.81	-0.1
3,104,253	+				+1.2
3,104,253	+				+3.0
3,104,254	-				-1.3
3,104,254	-				+0.8
3,104,259	+				+1.0
3,104,366	+		Pf1N1B4_2765	0.15	+0.2
3,104,366	+		Pf1N1B4_2765	0.15	+0.1
3,104,367	-		Pf1N1B4_2765	0.15	+0.6
3,104,367	-		Pf1N1B4_2765	0.15	-1.7
3,104,489	+		Pf1N1B4_2765	0.45	+1.4
3,104,490	-		Pf1N1B4_2765	0.45	-2.2
3,104,490	-		Pf1N1B4_2765	0.45	-0.0
3,104,490	-		Pf1N1B4_2765	0.45	-0.0
3,104,490	-		Pf1N1B4_2765	0.45	+0.4
3,104,494	+		Pf1N1B4_2765	0.46	-0.9
3,104,495	-		Pf1N1B4_2765	0.46	-1.7
3,104,506	-		Pf1N1B4_2765	0.49	+1.5
3,104,583	+		Pf1N1B4_2765	0.67	+0.3
3,104,583	+		Pf1N1B4_2765	0.67	-0.4
3,104,583	+		Pf1N1B4_2765	0.67	-0.0
3,104,583	+		Pf1N1B4_2765	0.67	+0.3
3,104,583	+		Pf1N1B4_2765	0.67	+0.4
3,104,584	-		Pf1N1B4_2765	0.68	+0.2
3,104,584	-		Pf1N1B4_2765	0.68	+0.2
3,104,584	-		Pf1N1B4_2765	0.68	-0.8
3,104,584	-		Pf1N1B4_2765	0.68	-1.1
3,104,584	-		Pf1N1B4_2765	0.68	+2.4
3,104,676	-				+0.1
3,104,676	-				-1.4
3,104,676	-				+0.1
3,104,676	-				-0.2
3,104,676	-				+0.8
3,104,676	-				-0.0
3,104,676	-				+0.2
3,104,676	-				+0.4
3,104,676	-				-1.0
3,104,676	-				-0.2
3,104,676	-				-0.4
3,104,706	+				+0.7
3,104,706	+				-0.0
3,104,706	+				-0.6
3,104,707	-				-1.0
3,104,707	-				-0.1
3,104,707	-				+0.3
3,104,707	-				-1.0
3,104,707	-				-0.5
3,104,707	-				-2.8
3,104,707	-				+0.2
3,104,717	+				-1.1
3,104,717	+				+1.0
3,104,718	-				-1.0
3,104,718	-				-0.5
3,104,718	-				+3.0
3,104,718	-				+0.4
3,104,718	-				-0.0
3,104,718	-				-0.0
3,104,718	-				+0.6
3,104,718	-				+1.0
3,104,722	+				+0.2
3,104,723	-				+1.5
3,104,723	-				-0.6
3,104,723	-				-0.6
3,104,733	+				-0.0
3,104,734	-				-0.2
3,104,759	+				-1.2
3,104,759	+				-0.6
3,104,760	-				-1.3
3,104,760	-				-0.2
3,104,812	-				-1.0
3,104,834	-				-0.0
3,104,834	-				-0.0
3,104,874	+				-0.0
3,104,875	-				-1.9
3,104,924	+				-0.1
3,104,925	-				+0.4
3,104,925	-				+2.2
3,104,925	-				+0.2
3,104,925	-				+1.1
3,104,925	-				-0.0
3,104,925	-				-1.2
3,104,928	+				-0.2
3,104,928	+				+0.6
3,104,928	+				-0.8
3,104,928	+				-0.4
3,104,929	-				+0.7
3,104,929	-				+0.2
3,104,929	-				+0.2
3,104,929	-				-0.0
3,104,929	-				-1.8
3,104,950	+				-0.6
3,104,983	+				+1.5
3,104,983	+				+0.1
3,104,984	-				-0.0
3,104,984	-				+0.2
3,104,984	-				-0.0
3,104,984	-				-0.2
3,105,316	+		Pf1N1B4_2766	0.20	+0.6
3,105,316	+		Pf1N1B4_2766	0.20	-1.8
3,105,317	-		Pf1N1B4_2766	0.20	-0.6
3,105,317	-		Pf1N1B4_2766	0.20	-0.4
3,105,317	-		Pf1N1B4_2766	0.20	+0.2
3,105,344	-		Pf1N1B4_2766	0.22	-0.0
3,105,427	-		Pf1N1B4_2766	0.27	-1.6
3,105,616	-		Pf1N1B4_2766	0.40	-0.8
3,105,668	-		Pf1N1B4_2766	0.43	+0.5
3,105,668	-		Pf1N1B4_2766	0.43	-0.8
3,105,668	-		Pf1N1B4_2766	0.43	-0.5
3,105,668	-				+1.6
3,105,676	-		Pf1N1B4_2766	0.44	-0.0
3,105,676	-		Pf1N1B4_2766	0.44	+2.2
3,105,676	-		Pf1N1B4_2766	0.44	+1.0
3,105,709	-		Pf1N1B4_2766	0.46	+1.6
3,105,709	-		Pf1N1B4_2766	0.46	-0.0
3,105,709	-		Pf1N1B4_2766	0.46	+1.2
3,105,789	+		Pf1N1B4_2766	0.51	-0.0
3,105,789	+		Pf1N1B4_2766	0.51	-0.2
3,105,797	+		Pf1N1B4_2766	0.51	-1.0
3,105,797	+		Pf1N1B4_2766	0.51	+0.2
3,105,798	-		Pf1N1B4_2766	0.52	-0.9
3,105,798	-		Pf1N1B4_2766	0.52	-0.6
3,105,798	-		Pf1N1B4_2766	0.52	+1.0
3,105,803	+		Pf1N1B4_2766	0.52	-0.8
3,105,842	+		Pf1N1B4_2766	0.54	-1.7
3,106,027	+		Pf1N1B4_2766	0.66	-0.0
3,106,028	-		Pf1N1B4_2766	0.66	-1.0
3,106,028	-		Pf1N1B4_2766	0.66	+2.0
3,106,084	-		Pf1N1B4_2766	0.70	+1.0
3,106,210	+		Pf1N1B4_2766	0.78	-1.4
3,106,210	+		Pf1N1B4_2766	0.78	+1.2
3,106,215	+		Pf1N1B4_2766	0.79	-0.6
3,106,215	+		Pf1N1B4_2766	0.79	+1.0
3,106,215	+		Pf1N1B4_2766	0.79	-2.3
3,106,216	-		Pf1N1B4_2766	0.79	+0.2
3,106,449	+				-1.6
3,106,449	+				+0.8
3,106,450	-				-0.3
3,106,489	+				+0.4
3,106,490	-				+0.1
3,106,705	+		Pf1N1B4_2767	0.19	+0.1
3,106,705	+		Pf1N1B4_2767	0.19	-0.9
3,106,705	+		Pf1N1B4_2767	0.19	-0.6
3,106,706	-		Pf1N1B4_2767	0.19	-1.2
3,106,706	-		Pf1N1B4_2767	0.19	+1.2
3,106,713	+		Pf1N1B4_2767	0.20	+0.8
3,106,713	+		Pf1N1B4_2767	0.20	-1.0
3,106,713	+		Pf1N1B4_2767	0.20	-0.4
3,106,713	+		Pf1N1B4_2767	0.20	+1.0
3,106,713	+		Pf1N1B4_2767	0.20	+1.6
3,106,713	+		Pf1N1B4_2767	0.20	-0.6
3,106,716	+		Pf1N1B4_2767	0.21	-0.4
3,106,716	+		Pf1N1B4_2767	0.21	+0.7
3,106,716	+		Pf1N1B4_2767	0.21	+1.8
3,106,716	+		Pf1N1B4_2767	0.21	-0.6
3,106,717	-		Pf1N1B4_2767	0.21	-0.0
3,106,717	-		Pf1N1B4_2767	0.21	+0.1
3,106,717	-		Pf1N1B4_2767	0.21	-0.2
3,106,717	-		Pf1N1B4_2767	0.21	+1.0
3,106,717	-		Pf1N1B4_2767	0.21	+1.0
3,106,717	-		Pf1N1B4_2767	0.21	+0.6
3,106,758	-		Pf1N1B4_2767	0.28	+0.2
3,106,758	-		Pf1N1B4_2767	0.28	+0.2
3,106,806	+		Pf1N1B4_2767	0.37	+0.3
3,106,830	+		Pf1N1B4_2767	0.41	-0.8
3,107,019	+		Pf1N1B4_2767	0.75	-0.6
3,107,019	+		Pf1N1B4_2767	0.75	-0.0
3,107,019	+		Pf1N1B4_2767	0.75	-0.5
3,107,020	-		Pf1N1B4_2767	0.75	-0.0
3,107,020	-		Pf1N1B4_2767	0.75	-0.6
3,107,173	+				-0.6
3,107,173	+				-0.2
3,107,173	+				-0.0
3,107,173	+				+0.7
3,107,173	+				+0.5
3,107,174	-				-0.1
3,107,174	-				-0.9
3,107,223	+				-0.4
3,107,224	-				+0.1
3,107,224	-				+1.0
3,107,224	-				-0.4
3,107,224	-				-0.6
3,107,224	-				-0.4
3,107,224	-				+0.2