Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1722

Experiment: 5-Hydroxymethylfurfural 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1720 and Pf1N1B4_1721 are separated by 111 nucleotidesPf1N1B4_1721 and Pf1N1B4_1722 are separated by 111 nucleotidesPf1N1B4_1722 and Pf1N1B4_1723 are separated by 85 nucleotidesPf1N1B4_1723 and Pf1N1B4_1724 are separated by 90 nucleotides Pf1N1B4_1720 - Helix-turn-helix motif, at 1,968,426 to 1,968,674 _1720 Pf1N1B4_1721 - DNA-binding heavy metal response regulator, at 1,968,786 to 1,969,151 _1721 Pf1N1B4_1722 - transcriptional regulator, Crp/Fnr family, at 1,969,263 to 1,969,949 _1722 Pf1N1B4_1723 - FIG028593: membrane protein, at 1,970,035 to 1,970,553 _1723 Pf1N1B4_1724 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 1,970,644 to 1,971,633 _1724 Position (kb) 1969 1970Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1968.267 kb on + strandat 1968.267 kb on + strandat 1968.267 kb on + strandat 1968.268 kb on - strandat 1968.268 kb on - strandat 1968.330 kb on + strandat 1968.330 kb on + strandat 1968.330 kb on + strandat 1968.330 kb on + strandat 1968.330 kb on + strandat 1968.331 kb on - strandat 1968.331 kb on - strandat 1968.331 kb on - strandat 1968.331 kb on - strandat 1968.331 kb on - strandat 1968.335 kb on - strandat 1968.335 kb on - strandat 1968.335 kb on - strandat 1968.441 kb on - strandat 1968.441 kb on - strandat 1968.693 kb on - strandat 1968.715 kb on - strandat 1968.724 kb on - strandat 1968.724 kb on - strandat 1968.759 kb on + strandat 1968.760 kb on - strandat 1968.760 kb on - strandat 1968.760 kb on - strandat 1969.071 kb on + strand, within Pf1N1B4_1721at 1969.072 kb on - strand, within Pf1N1B4_1721at 1969.072 kb on - strand, within Pf1N1B4_1721at 1969.079 kb on - strand, within Pf1N1B4_1721at 1969.079 kb on - strand, within Pf1N1B4_1721at 1969.079 kb on - strand, within Pf1N1B4_1721at 1969.138 kb on - strandat 1969.182 kb on - strandat 1969.210 kb on + strandat 1969.305 kb on - strandat 1969.318 kb on + strandat 1969.319 kb on - strandat 1969.319 kb on - strandat 1969.323 kb on + strandat 1969.324 kb on - strandat 1969.324 kb on - strandat 1969.324 kb on - strandat 1969.580 kb on - strand, within Pf1N1B4_1722at 1969.654 kb on + strand, within Pf1N1B4_1722at 1969.654 kb on + strand, within Pf1N1B4_1722at 1969.654 kb on + strand, within Pf1N1B4_1722at 1969.654 kb on + strand, within Pf1N1B4_1722at 1969.654 kb on + strand, within Pf1N1B4_1722at 1969.655 kb on - strand, within Pf1N1B4_1722at 1969.767 kb on - strand, within Pf1N1B4_1722at 1969.767 kb on - strand, within Pf1N1B4_1722at 1969.792 kb on + strand, within Pf1N1B4_1722at 1969.793 kb on - strand, within Pf1N1B4_1722at 1969.793 kb on - strand, within Pf1N1B4_1722at 1969.793 kb on - strand, within Pf1N1B4_1722at 1969.793 kb on - strand, within Pf1N1B4_1722at 1969.824 kb on + strand, within Pf1N1B4_1722at 1969.825 kb on - strand, within Pf1N1B4_1722at 1969.874 kb on + strand, within Pf1N1B4_1722at 1969.874 kb on + strand, within Pf1N1B4_1722at 1969.874 kb on + strand, within Pf1N1B4_1722at 1969.875 kb on - strand, within Pf1N1B4_1722at 1969.882 kb on - strandat 1969.893 kb on + strandat 1969.893 kb on + strandat 1969.894 kb on - strandat 1969.894 kb on - strandat 1970.019 kb on + strandat 1970.020 kb on - strandat 1970.020 kb on - strandat 1970.020 kb on - strandat 1970.030 kb on + strandat 1970.030 kb on + strandat 1970.031 kb on - strandat 1970.031 kb on - strandat 1970.094 kb on + strand, within Pf1N1B4_1723at 1970.095 kb on - strand, within Pf1N1B4_1723at 1970.129 kb on + strand, within Pf1N1B4_1723at 1970.129 kb on + strand, within Pf1N1B4_1723at 1970.130 kb on - strand, within Pf1N1B4_1723at 1970.221 kb on + strand, within Pf1N1B4_1723at 1970.222 kb on - strand, within Pf1N1B4_1723at 1970.222 kb on - strand, within Pf1N1B4_1723at 1970.294 kb on + strand, within Pf1N1B4_1723at 1970.294 kb on + strand, within Pf1N1B4_1723at 1970.310 kb on + strand, within Pf1N1B4_1723at 1970.310 kb on + strand, within Pf1N1B4_1723at 1970.310 kb on + strand, within Pf1N1B4_1723at 1970.311 kb on - strand, within Pf1N1B4_1723at 1970.311 kb on - strand, within Pf1N1B4_1723at 1970.311 kb on - strand, within Pf1N1B4_1723at 1970.380 kb on + strand, within Pf1N1B4_1723at 1970.380 kb on + strand, within Pf1N1B4_1723at 1970.381 kb on - strand, within Pf1N1B4_1723at 1970.381 kb on - strand, within Pf1N1B4_1723at 1970.381 kb on - strand, within Pf1N1B4_1723at 1970.381 kb on - strand, within Pf1N1B4_1723at 1970.381 kb on - strand, within Pf1N1B4_1723at 1970.383 kb on + strand, within Pf1N1B4_1723at 1970.383 kb on + strand, within Pf1N1B4_1723at 1970.551 kb on + strandat 1970.645 kb on + strandat 1970.645 kb on + strandat 1970.645 kb on + strandat 1970.646 kb on - strandat 1970.686 kb on + strandat 1970.687 kb on - strandat 1970.809 kb on - strand, within Pf1N1B4_1724at 1970.809 kb on - strand, within Pf1N1B4_1724at 1970.933 kb on + strand, within Pf1N1B4_1724

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM
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1,968,267 + -1.6
1,968,267 + +0.8
1,968,267 + -2.4
1,968,268 - +0.6
1,968,268 - -0.4
1,968,330 + +2.2
1,968,330 + -0.8
1,968,330 + -1.9
1,968,330 + -0.2
1,968,330 + -1.8
1,968,331 - +0.4
1,968,331 - -0.1
1,968,331 - +0.2
1,968,331 - -0.8
1,968,331 - +0.8
1,968,335 - +0.3
1,968,335 - -0.8
1,968,335 - +0.4
1,968,441 - -0.4
1,968,441 - +0.2
1,968,693 - -0.1
1,968,715 - -0.3
1,968,724 - -0.0
1,968,724 - +0.0
1,968,759 + +2.2
1,968,760 - +0.6
1,968,760 - -2.5
1,968,760 - +0.8
1,969,071 + Pf1N1B4_1721 0.78 +0.6
1,969,072 - Pf1N1B4_1721 0.78 +0.5
1,969,072 - Pf1N1B4_1721 0.78 -1.2
1,969,079 - Pf1N1B4_1721 0.80 +0.9
1,969,079 - Pf1N1B4_1721 0.80 +0.2
1,969,079 - Pf1N1B4_1721 0.80 +0.5
1,969,138 - -0.3
1,969,182 - +0.4
1,969,210 + +0.3
1,969,305 - -0.8
1,969,318 + -0.7
1,969,319 - -0.2
1,969,319 - -0.4
1,969,323 + -0.4
1,969,324 - -0.1
1,969,324 - +0.8
1,969,324 - -0.9
1,969,580 - Pf1N1B4_1722 0.46 +0.4
1,969,654 + Pf1N1B4_1722 0.57 -0.9
1,969,654 + Pf1N1B4_1722 0.57 -0.1
1,969,654 + Pf1N1B4_1722 0.57 +0.0
1,969,654 + Pf1N1B4_1722 0.57 +0.3
1,969,654 + Pf1N1B4_1722 0.57 -0.1
1,969,655 - Pf1N1B4_1722 0.57 +0.9
1,969,767 - Pf1N1B4_1722 0.73 +0.5
1,969,767 - Pf1N1B4_1722 0.73 -0.0
1,969,792 + Pf1N1B4_1722 0.77 +0.9
1,969,793 - Pf1N1B4_1722 0.77 +0.8
1,969,793 - Pf1N1B4_1722 0.77 +0.3
1,969,793 - Pf1N1B4_1722 0.77 +0.8
1,969,793 - Pf1N1B4_1722 0.77 -1.0
1,969,824 + Pf1N1B4_1722 0.82 -0.2
1,969,825 - Pf1N1B4_1722 0.82 +0.8
1,969,874 + Pf1N1B4_1722 0.89 -0.4
1,969,874 + Pf1N1B4_1722 0.89 -0.6
1,969,874 + Pf1N1B4_1722 0.89 -0.1
1,969,875 - Pf1N1B4_1722 0.89 -0.2
1,969,882 - -0.9
1,969,893 + -0.3
1,969,893 + -0.7
1,969,894 - -0.4
1,969,894 - +1.2
1,970,019 + -1.1
1,970,020 - -0.3
1,970,020 - -3.4
1,970,020 - -1.2
1,970,030 + +0.9
1,970,030 + -1.6
1,970,031 - +0.4
1,970,031 - +0.6
1,970,094 + Pf1N1B4_1723 0.11 -1.4
1,970,095 - Pf1N1B4_1723 0.12 +0.3
1,970,129 + Pf1N1B4_1723 0.18 -0.7
1,970,129 + Pf1N1B4_1723 0.18 +0.2
1,970,130 - Pf1N1B4_1723 0.18 +1.9
1,970,221 + Pf1N1B4_1723 0.36 -0.8
1,970,222 - Pf1N1B4_1723 0.36 -0.6
1,970,222 - Pf1N1B4_1723 0.36 -1.2
1,970,294 + Pf1N1B4_1723 0.50 +0.8
1,970,294 + Pf1N1B4_1723 0.50 -0.1
1,970,310 + Pf1N1B4_1723 0.53 -0.4
1,970,310 + Pf1N1B4_1723 0.53 -1.4
1,970,310 + Pf1N1B4_1723 0.53 +1.2
1,970,311 - Pf1N1B4_1723 0.53 +0.3
1,970,311 - Pf1N1B4_1723 0.53 +3.8
1,970,311 - Pf1N1B4_1723 0.53 -0.4
1,970,380 + Pf1N1B4_1723 0.66 +0.9
1,970,380 + Pf1N1B4_1723 0.66 -0.2
1,970,381 - Pf1N1B4_1723 0.67 +0.2
1,970,381 - Pf1N1B4_1723 0.67 -0.4
1,970,381 - Pf1N1B4_1723 0.67 -1.2
1,970,381 - Pf1N1B4_1723 0.67 +1.4
1,970,381 - Pf1N1B4_1723 0.67 +0.5
1,970,383 + Pf1N1B4_1723 0.67 +0.7
1,970,383 + Pf1N1B4_1723 0.67 -1.0
1,970,551 + -1.5
1,970,645 + +0.6
1,970,645 + +0.4
1,970,645 + -0.6
1,970,646 - -0.1
1,970,686 + -0.6
1,970,687 - -0.0
1,970,809 - Pf1N1B4_1724 0.17 +2.2
1,970,809 - Pf1N1B4_1724 0.17 -0.1
1,970,933 + Pf1N1B4_1724 0.29 +0.6

Or see this region's nucleotide sequence