Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1544

Experiment: 5-Hydroxymethylfurfural 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 2.5 mM
1,778,979	-		Pf1N1B4_1543	0.28	+1.7
1,779,038	+		Pf1N1B4_1543	0.34	+0.1
1,779,095	+		Pf1N1B4_1543	0.39	-0.8
1,779,095	+		Pf1N1B4_1543	0.39	-1.5
1,779,095	+		Pf1N1B4_1543	0.39	+0.5
1,779,095	+		Pf1N1B4_1543	0.39	+0.9
1,779,095	+		Pf1N1B4_1543	0.39	+0.0
1,779,095	+		Pf1N1B4_1543	0.39	+0.6
1,779,096	-		Pf1N1B4_1543	0.39	-0.9
1,779,096	-		Pf1N1B4_1543	0.39	+3.1
1,779,227	+		Pf1N1B4_1543	0.51	+1.7
1,779,228	-		Pf1N1B4_1543	0.51	-0.2
1,779,404	+		Pf1N1B4_1543	0.68	+0.3
1,779,404	+		Pf1N1B4_1543	0.68	+0.5
1,779,404	+		Pf1N1B4_1543	0.68	+0.1
1,779,404	+		Pf1N1B4_1543	0.68	+0.6
1,779,404	+		Pf1N1B4_1543	0.68	+1.6
1,779,404	+		Pf1N1B4_1543	0.68	+0.1
1,779,404	+		Pf1N1B4_1543	0.68	+0.4
1,779,405	-		Pf1N1B4_1543	0.68	+0.7
1,779,405	-		Pf1N1B4_1543	0.68	-0.5
1,779,585	+		Pf1N1B4_1543	0.85	+0.8
1,779,629	+		Pf1N1B4_1543	0.89	-0.5
1,779,630	-		Pf1N1B4_1543	0.89	+1.1
1,779,664	+				-0.0
1,779,664	+				-1.0
1,779,665	-				-0.9
1,779,756	+				-0.7
1,779,854	+				+1.1
1,779,854	+				+1.1
1,779,854	+				+0.1
1,779,854	+				+0.1
1,779,854	+				+1.5
1,779,856	+				-0.0
1,779,856	+				-0.5
1,779,856	+				-0.1
1,779,856	+				-0.5
1,779,906	+				-0.5
1,779,927	+				-1.2
1,780,085	+				+2.1
1,780,210	+				-0.5
1,780,301	+		Pf1N1B4_1544	0.14	+0.1
1,780,449	+				+1.1
1,780,464	+		Pf1N1B4_1544	0.21	-0.8
1,780,509	+		Pf1N1B4_1544	0.22	-1.1
1,780,509	+		Pf1N1B4_1544	0.22	-1.0
1,780,651	-		Pf1N1B4_1544	0.28	-0.7
1,780,651	-		Pf1N1B4_1544	0.28	+1.1
1,780,651	-		Pf1N1B4_1544	0.28	-2.0
1,780,652	+		Pf1N1B4_1544	0.28	-1.0
1,780,680	+		Pf1N1B4_1544	0.29	+0.7
1,780,717	-				+0.1
1,780,717	-		Pf1N1B4_1544	0.31	+0.1
1,780,749	+		Pf1N1B4_1544	0.32	+0.4
1,780,749	+		Pf1N1B4_1544	0.32	-1.2
1,780,803	+		Pf1N1B4_1544	0.34	-1.2
1,781,310	+		Pf1N1B4_1544	0.55	+0.5
1,781,310	+		Pf1N1B4_1544	0.55	-0.9
1,781,310	+		Pf1N1B4_1544	0.55	-1.2
1,781,311	-		Pf1N1B4_1544	0.55	+0.5
1,781,311	-		Pf1N1B4_1544	0.55	-1.2
1,781,311	-		Pf1N1B4_1544	0.55	+0.8
1,781,311	-		Pf1N1B4_1544	0.55	+0.4
1,781,311	-		Pf1N1B4_1544	0.55	-0.5
1,781,311	-		Pf1N1B4_1544	0.55	-0.5
1,781,392	-		Pf1N1B4_1544	0.58	-0.1
1,781,393	+		Pf1N1B4_1544	0.59	-1.2
1,781,423	+		Pf1N1B4_1544	0.60	-0.5
1,781,424	-		Pf1N1B4_1544	0.60	+0.7
1,781,424	-		Pf1N1B4_1544	0.60	+0.1
1,781,424	-		Pf1N1B4_1544	0.60	-0.2
1,781,518	-		Pf1N1B4_1544	0.64	-1.2
1,781,583	+		Pf1N1B4_1544	0.66	-1.6
1,781,584	-		Pf1N1B4_1544	0.66	-0.5
1,781,584	-		Pf1N1B4_1544	0.66	+1.5
1,781,706	+		Pf1N1B4_1544	0.71	+0.5
1,781,721	+		Pf1N1B4_1544	0.72	+0.1
1,781,762	-				-0.5
1,781,762	-		Pf1N1B4_1544	0.74	+0.3
1,781,934	+		Pf1N1B4_1544	0.81	-0.0
1,781,934	+		Pf1N1B4_1544	0.81	-1.2
1,781,934	+		Pf1N1B4_1544	0.81	-0.8
1,781,934	+		Pf1N1B4_1544	0.81	-0.2
1,781,934	+		Pf1N1B4_1544	0.81	-0.1
1,781,934	+		Pf1N1B4_1544	0.81	+0.5
1,781,934	+		Pf1N1B4_1544	0.81	-1.6
1,781,934	+		Pf1N1B4_1544	0.81	+0.5
1,781,934	+		Pf1N1B4_1544	0.81	+1.1
1,781,935	-		Pf1N1B4_1544	0.81	-0.5
1,781,935	-		Pf1N1B4_1544	0.81	-0.9
1,781,935	-		Pf1N1B4_1544	0.81	+0.1
1,781,935	-				-0.5
1,781,935	-		Pf1N1B4_1544	0.81	+1.1
1,781,935	-		Pf1N1B4_1544	0.81	+0.4
1,781,935	-		Pf1N1B4_1544	0.81	-0.0
1,781,935	-		Pf1N1B4_1544	0.81	-0.3
1,781,935	-		Pf1N1B4_1544	0.81	-0.9
1,781,935	-		Pf1N1B4_1544	0.81	-0.6
1,781,935	-		Pf1N1B4_1544	0.81	-0.7
1,782,066	+		Pf1N1B4_1544	0.86	-1.9
1,782,079	-		Pf1N1B4_1544	0.87	+0.1
1,782,079	-		Pf1N1B4_1544	0.87	+2.1
1,782,171	+				-0.9
1,782,171	+				-0.5
1,782,172	-				-0.5
1,782,172	-				+1.4
1,782,172	-				+1.1
1,782,172	-				+0.4
1,782,291	+				+1.1
1,782,413	+				-0.7
1,782,413	+				-0.1
1,782,413	+				-0.7
1,782,413	+				+0.6
1,782,413	+				-0.3
1,782,414	-				-0.6
1,782,419	+				-0.5
1,782,419	+				-0.3
1,782,420	-				-0.5
1,782,420	-				+0.1
1,782,423	+				-1.5
1,782,423	+				+0.3
1,782,423	+				-1.6
1,782,424	-				+2.7
1,782,424	-				+0.0
1,782,424	-				-1.5
1,782,424	-				-1.5
1,782,593	+				+0.5
1,782,594	-				-1.7
1,782,696	+				-1.5
1,782,697	-				+0.7
1,782,697	-				-1.7
1,782,697	-				+0.1
1,782,804	+		Pf1N1B4_1545	0.11	+0.7
1,782,804	+		Pf1N1B4_1545	0.11	+0.1
1,782,804	+		Pf1N1B4_1545	0.11	-0.5
1,782,804	+		Pf1N1B4_1545	0.11	+0.1
1,782,804	+		Pf1N1B4_1545	0.11	+2.5
1,782,804	+		Pf1N1B4_1545	0.11	+1.5
1,782,804	+		Pf1N1B4_1545	0.11	+0.4
1,782,805	-		Pf1N1B4_1545	0.12	+1.1
1,782,805	-		Pf1N1B4_1545	0.12	+0.1
1,782,805	-		Pf1N1B4_1545	0.12	+1.8
1,782,805	-		Pf1N1B4_1545	0.12	-0.7
1,782,805	-		Pf1N1B4_1545	0.12	-0.3
1,782,805	-		Pf1N1B4_1545	0.12	-0.0
1,782,805	-		Pf1N1B4_1545	0.12	+0.1
1,782,805	-		Pf1N1B4_1545	0.12	+0.1
1,782,837	+		Pf1N1B4_1545	0.14	+0.1
1,782,974	+		Pf1N1B4_1545	0.25	-0.2
1,782,974	+		Pf1N1B4_1545	0.25	-0.5
1,782,974	+		Pf1N1B4_1545	0.25	+0.8
1,782,975	-		Pf1N1B4_1545	0.25	+1.9
1,782,975	-		Pf1N1B4_1545	0.25	+0.8
1,782,975	-		Pf1N1B4_1545	0.25	+0.5
1,783,227	+		Pf1N1B4_1545	0.45	+0.1
1,783,228	-		Pf1N1B4_1545	0.45	-0.0
1,783,228	-		Pf1N1B4_1545	0.45	+0.3
1,783,228	-		Pf1N1B4_1545	0.45	+0.7
1,783,281	+		Pf1N1B4_1545	0.49	+1.1
1,783,281	+		Pf1N1B4_1545	0.49	-0.4
1,783,281	+		Pf1N1B4_1545	0.49	-0.7
1,783,281	+		Pf1N1B4_1545	0.49	-1.5
1,783,281	+		Pf1N1B4_1545	0.49	-0.5
1,783,281	+				+1.1
1,783,281	+		Pf1N1B4_1545	0.49	+0.3
1,783,281	+		Pf1N1B4_1545	0.49	+0.4
1,783,282	-		Pf1N1B4_1545	0.49	-0.2
1,783,282	-		Pf1N1B4_1545	0.49	-0.2
1,783,282	-		Pf1N1B4_1545	0.49	-0.3
1,783,282	-		Pf1N1B4_1545	0.49	-1.9
1,783,282	-		Pf1N1B4_1545	0.49	-0.5
1,783,282	-		Pf1N1B4_1545	0.49	-0.9
1,783,282	-		Pf1N1B4_1545	0.49	+0.2
1,783,282	-		Pf1N1B4_1545	0.49	+0.3
1,783,282	-		Pf1N1B4_1545	0.49	+0.9
1,783,282	-		Pf1N1B4_1545	0.49	+1.1
1,783,282	-		Pf1N1B4_1545	0.49	-0.9
1,783,282	-		Pf1N1B4_1545	0.49	+0.6
1,783,282	-		Pf1N1B4_1545	0.49	+0.1
1,783,282	-		Pf1N1B4_1545	0.49	-0.1
1,783,282	-		Pf1N1B4_1545	0.49	+0.4
1,783,282	-		Pf1N1B4_1545	0.49	+0.7