Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1462

Experiment: 5-Hydroxymethylfurfural 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 2.5 mM
1,675,984	-		Pf1N1B4_1461	0.48	+1.5
1,676,088	-		Pf1N1B4_1461	0.57	+3.8
1,676,088	-		Pf1N1B4_1461	0.57	+2.7
1,676,088	-		Pf1N1B4_1461	0.57	+3.1
1,676,088	-		Pf1N1B4_1461	0.57	+3.5
1,676,520	-				+3.2
1,676,566	-				-0.5
1,676,566	-				-2.1
1,676,582	-				+0.1
1,676,610	-				-0.3
1,676,610	-				-1.2
1,676,610	-				+0.4
1,676,610	-				+0.2
1,676,610	-				-1.4
1,676,610	-				-1.2
1,676,612	-				+0.1
1,676,612	-				+0.5
1,676,612	-				-0.6
1,676,612	-				-0.1
1,676,667	-				+0.5
1,676,669	-				+0.2
1,676,669	-				+0.6
1,676,669	-				-0.2
1,676,669	-				-0.2
1,676,669	-				-0.5
1,676,669	-				+0.1
1,676,669	-				-1.1
1,676,675	-				+0.8
1,676,675	-				-0.5
1,676,675	-				+1.1
1,676,675	-				+0.5
1,676,677	-				-0.2
1,676,677	-				-1.7
1,676,677	-				-1.1
1,676,710	-				+1.7
1,676,749	-				-0.1
1,676,749	-				-0.1
1,676,767	-				-0.9
1,676,767	-				+0.2
1,676,873	-				-2.2
1,676,873	-				+2.1
1,676,873	-				+0.1
1,676,873	-				-0.9
1,676,873	-				-0.8
1,676,873	-				+0.5
1,676,873	-				-1.2
1,676,917	-		Pf1N1B4_1462	0.11	-0.9
1,676,926	-		Pf1N1B4_1462	0.12	-1.0
1,676,926	-		Pf1N1B4_1462	0.12	-0.2
1,676,974	-		Pf1N1B4_1462	0.20	-0.9
1,676,974	-		Pf1N1B4_1462	0.20	+0.1
1,677,082	+		Pf1N1B4_1462	0.37	-2.1
1,677,083	-		Pf1N1B4_1462	0.37	-1.6
1,677,118	+		Pf1N1B4_1462	0.43	-1.7
1,677,119	-		Pf1N1B4_1462	0.43	-0.2
1,677,119	-		Pf1N1B4_1462	0.43	+0.5
1,677,119	-		Pf1N1B4_1462	0.43	+1.0
1,677,119	-		Pf1N1B4_1462	0.43	-0.2
1,677,119	-		Pf1N1B4_1462	0.43	+0.1
1,677,119	-		Pf1N1B4_1462	0.43	+0.5
1,677,225	+		Pf1N1B4_1462	0.60	-0.3
1,677,225	+				+0.5
1,677,225	+		Pf1N1B4_1462	0.60	-1.1
1,677,225	+				+0.1
1,677,226	-		Pf1N1B4_1462	0.60	-1.0
1,677,226	-		Pf1N1B4_1462	0.60	-1.7
1,677,229	+		Pf1N1B4_1462	0.60	-0.5
1,677,229	+		Pf1N1B4_1462	0.60	-0.9
1,677,229	+				-0.5
1,677,229	+				-1.7
1,677,229	+				-0.9
1,677,229	+				-0.9
1,677,229	+		Pf1N1B4_1462	0.60	-0.9
1,677,229	+				-0.5
1,677,229	+				-0.5
1,677,229	+		Pf1N1B4_1462	0.60	-2.2
1,677,229	+				-1.2
1,677,229	+		Pf1N1B4_1462	0.60	+0.7
1,677,229	+		Pf1N1B4_1462	0.60	+1.4
1,677,230	-		Pf1N1B4_1462	0.60	-0.1
1,677,230	-				-0.5
1,677,230	-		Pf1N1B4_1462	0.60	+0.1
1,677,230	-		Pf1N1B4_1462	0.60	-1.2
1,677,230	-		Pf1N1B4_1462	0.60	-0.9
1,677,230	-		Pf1N1B4_1462	0.60	-1.1
1,677,230	-		Pf1N1B4_1462	0.60	-0.5
1,677,230	-		Pf1N1B4_1462	0.60	+1.1
1,677,230	-		Pf1N1B4_1462	0.60	-0.7
1,677,230	-		Pf1N1B4_1462	0.60	-0.8
1,677,230	-		Pf1N1B4_1462	0.60	+0.1
1,677,230	-		Pf1N1B4_1462	0.60	-0.4
1,677,230	-		Pf1N1B4_1462	0.60	+0.1
1,677,230	-		Pf1N1B4_1462	0.60	-1.8
1,677,230	-		Pf1N1B4_1462	0.60	-2.0
1,677,230	-		Pf1N1B4_1462	0.60	-0.6
1,677,230	-		Pf1N1B4_1462	0.60	-0.7
1,677,230	-				-0.9
1,677,230	-		Pf1N1B4_1462	0.60	+0.2
1,677,230	-		Pf1N1B4_1462	0.60	+0.6
1,677,261	-		Pf1N1B4_1462	0.65	-2.3
1,677,261	-		Pf1N1B4_1462	0.65	+0.1
1,677,261	-		Pf1N1B4_1462	0.65	-1.5
1,677,360	+		Pf1N1B4_1462	0.81	-0.7
1,677,360	+		Pf1N1B4_1462	0.81	-2.4
1,677,360	+				+0.1
1,677,360	+				+0.1
1,677,360	+				+1.1
1,677,360	+		Pf1N1B4_1462	0.81	-1.1
1,677,360	+		Pf1N1B4_1462	0.81	-2.5
1,677,360	+		Pf1N1B4_1462	0.81	-1.4
1,677,360	+				+1.1
1,677,360	+		Pf1N1B4_1462	0.81	-0.6
1,677,360	+		Pf1N1B4_1462	0.81	-2.1
1,677,360	+		Pf1N1B4_1462	0.81	+0.1
1,677,360	+				-0.9
1,677,360	+		Pf1N1B4_1462	0.81	+0.5
1,677,360	+		Pf1N1B4_1462	0.81	+0.4
1,677,360	+				+2.1
1,677,360	+		Pf1N1B4_1462	0.81	-0.9
1,677,360	+		Pf1N1B4_1462	0.81	-2.2
1,677,360	+		Pf1N1B4_1462	0.81	+0.7
1,677,360	+				+0.1
1,677,360	+		Pf1N1B4_1462	0.81	-2.4
1,677,360	+		Pf1N1B4_1462	0.81	+1.1
1,677,360	+				+2.1
1,677,360	+		Pf1N1B4_1462	0.81	-1.4
1,677,360	+				-0.9
1,677,360	+				+0.1
1,677,360	+		Pf1N1B4_1462	0.81	-0.6
1,677,360	+				+0.5
1,677,360	+		Pf1N1B4_1462	0.81	-1.2
1,677,360	+				+1.1
1,677,360	+				-0.9
1,677,360	+		Pf1N1B4_1462	0.81	+0.4
1,677,360	+		Pf1N1B4_1462	0.81	-0.5
1,677,360	+				-1.2
1,677,360	+		Pf1N1B4_1462	0.81	-0.5
1,677,360	+		Pf1N1B4_1462	0.81	+0.3
1,677,360	+		Pf1N1B4_1462	0.81	-1.2
1,677,360	+				-0.5
1,677,360	+		Pf1N1B4_1462	0.81	-0.1
1,677,360	+		Pf1N1B4_1462	0.81	-0.5
1,677,360	+				+1.1
1,677,360	+		Pf1N1B4_1462	0.81	-1.9
1,677,360	+		Pf1N1B4_1462	0.81	-0.9
1,677,360	+		Pf1N1B4_1462	0.81	-1.7
1,677,360	+				-0.9
1,677,360	+				+0.1
1,677,360	+		Pf1N1B4_1462	0.81	+1.1
1,677,360	+		Pf1N1B4_1462	0.81	-1.6
1,677,360	+		Pf1N1B4_1462	0.81	+1.1
1,677,360	+				+0.1
1,677,360	+				+0.1
1,677,360	+		Pf1N1B4_1462	0.81	-0.5
1,677,360	+		Pf1N1B4_1462	0.81	-1.2
1,677,360	+		Pf1N1B4_1462	0.81	+0.4
1,677,360	+		Pf1N1B4_1462	0.81	-0.7
1,677,361	-		Pf1N1B4_1462	0.81	-0.5
1,677,361	-		Pf1N1B4_1462	0.81	-1.9
1,677,361	-		Pf1N1B4_1462	0.81	+0.1
1,677,361	-		Pf1N1B4_1462	0.81	+0.7
1,677,361	-		Pf1N1B4_1462	0.81	+0.4
1,677,361	-		Pf1N1B4_1462	0.81	+0.5
1,677,361	-		Pf1N1B4_1462	0.81	-1.2
1,677,361	-		Pf1N1B4_1462	0.81	-3.0
1,677,361	-		Pf1N1B4_1462	0.81	+0.5
1,677,361	-		Pf1N1B4_1462	0.81	-0.1
1,677,361	-				+0.1
1,677,361	-		Pf1N1B4_1462	0.81	-0.9
1,677,361	-				+0.1
1,677,361	-		Pf1N1B4_1462	0.81	-0.2
1,677,361	-		Pf1N1B4_1462	0.81	+0.1
1,677,361	-		Pf1N1B4_1462	0.81	-0.9
1,677,361	-		Pf1N1B4_1462	0.81	-0.3
1,677,361	-		Pf1N1B4_1462	0.81	-2.4
1,677,361	-		Pf1N1B4_1462	0.81	-0.1
1,677,361	-		Pf1N1B4_1462	0.81	-1.5
1,677,361	-		Pf1N1B4_1462	0.81	-0.6
1,677,361	-		Pf1N1B4_1462	0.81	-1.1
1,677,361	-		Pf1N1B4_1462	0.81	-0.5
1,677,361	-		Pf1N1B4_1462	0.81	+0.1
1,677,361	-		Pf1N1B4_1462	0.81	-1.4
1,677,361	-		Pf1N1B4_1462	0.81	-0.1
1,677,361	-		Pf1N1B4_1462	0.81	-1.8
1,677,361	-		Pf1N1B4_1462	0.81	-1.2
1,677,361	-		Pf1N1B4_1462	0.81	-1.2
1,677,361	-		Pf1N1B4_1462	0.81	+0.4
1,677,361	-		Pf1N1B4_1462	0.81	-1.5
1,677,361	-		Pf1N1B4_1462	0.81	-1.2
1,677,361	-		Pf1N1B4_1462	0.81	-1.5
1,677,361	-		Pf1N1B4_1462	0.81	+1.1
1,677,361	-		Pf1N1B4_1462	0.81	-0.4
1,677,361	-		Pf1N1B4_1462	0.81	-0.6
1,677,361	-		Pf1N1B4_1462	0.81	-0.5
1,677,361	-		Pf1N1B4_1462	0.81	-0.2
1,677,361	-		Pf1N1B4_1462	0.81	-1.7
1,677,361	-		Pf1N1B4_1462	0.81	-1.7
1,677,361	-		Pf1N1B4_1462	0.81	-0.9
1,677,361	-		Pf1N1B4_1462	0.81	-1.5
1,677,361	-		Pf1N1B4_1462	0.81	-1.2
1,677,361	-		Pf1N1B4_1462	0.81	+0.1
1,677,361	-		Pf1N1B4_1462	0.81	-0.7
1,677,361	-		Pf1N1B4_1462	0.81	-0.3
1,677,361	-		Pf1N1B4_1462	0.81	-1.2
1,677,361	-		Pf1N1B4_1462	0.81	+0.4
1,677,361	-		Pf1N1B4_1462	0.81	-0.7
1,677,361	-		Pf1N1B4_1462	0.81	+0.4
1,677,361	-		Pf1N1B4_1462	0.81	-1.9
1,677,392	+		Pf1N1B4_1462	0.86	-0.9
1,677,421	+				-1.9
1,677,421	+				-0.8
1,677,422	-				+0.8
1,677,565	-				+2.3
1,677,565	-				+1.6
1,677,565	-				+2.9
1,677,606	-				+1.5
1,677,606	-				+2.7
1,677,606	-				+2.8
1,677,606	-				+2.6
1,677,608	-				+3.3
1,677,608	-				+3.0
1,677,677	-		Pf1N1B4_1463	0.15	+1.8
1,677,677	-		Pf1N1B4_1463	0.15	+3.2
1,677,677	-		Pf1N1B4_1463	0.15	+0.9
1,677,677	-		Pf1N1B4_1463	0.15	+3.1
1,677,677	-		Pf1N1B4_1463	0.15	+1.4
1,677,677	-		Pf1N1B4_1463	0.15	+1.6
1,677,742	-		Pf1N1B4_1463	0.20	+1.3
1,677,742	-		Pf1N1B4_1463	0.20	+2.6
1,677,893	-		Pf1N1B4_1463	0.32	+2.2
1,677,992	-		Pf1N1B4_1463	0.40	+0.1
1,677,992	-		Pf1N1B4_1463	0.40	+2.4
1,677,998	+		Pf1N1B4_1463	0.41	+3.7
1,677,999	-		Pf1N1B4_1463	0.41	+4.1
1,677,999	-		Pf1N1B4_1463	0.41	+2.3
1,677,999	-		Pf1N1B4_1463	0.41	+2.0
1,678,059	+		Pf1N1B4_1463	0.46	+2.1
1,678,060	-		Pf1N1B4_1463	0.46	+3.8
1,678,060	-		Pf1N1B4_1463	0.46	+3.3
1,678,060	-		Pf1N1B4_1463	0.46	+3.0
1,678,060	-		Pf1N1B4_1463	0.46	+4.0
1,678,060	-		Pf1N1B4_1463	0.46	+3.0
1,678,060	-		Pf1N1B4_1463	0.46	+2.6
1,678,091	+		Pf1N1B4_1463	0.49	+3.0
1,678,092	-		Pf1N1B4_1463	0.49	+2.2
1,678,092	-		Pf1N1B4_1463	0.49	+3.2
1,678,092	-		Pf1N1B4_1463	0.49	+2.2
1,678,092	-		Pf1N1B4_1463	0.49	+3.8
1,678,092	-		Pf1N1B4_1463	0.49	+3.7
1,678,092	-		Pf1N1B4_1463	0.49	+3.8
1,678,092	-		Pf1N1B4_1463	0.49	+2.1
1,678,092	-		Pf1N1B4_1463	0.49	+0.8
1,678,092	-		Pf1N1B4_1463	0.49	+0.8
1,678,092	-		Pf1N1B4_1463	0.49	-0.1
1,678,092	-		Pf1N1B4_1463	0.49	+2.5
1,678,092	-		Pf1N1B4_1463	0.49	+3.2
1,678,109	+		Pf1N1B4_1463	0.50	+3.1
1,678,110	-		Pf1N1B4_1463	0.50	+1.1
1,678,110	-		Pf1N1B4_1463	0.50	+3.0
1,678,180	-		Pf1N1B4_1463	0.56	+5.1
1,678,180	-		Pf1N1B4_1463	0.56	+2.9
1,678,180	-		Pf1N1B4_1463	0.56	+2.9
1,678,180	-		Pf1N1B4_1463	0.56	+1.3
1,678,180	-		Pf1N1B4_1463	0.56	+1.1
1,678,200	-				+2.7
1,678,200	-		Pf1N1B4_1463	0.58	+3.6
1,678,200	-		Pf1N1B4_1463	0.58	+2.2
1,678,340	-		Pf1N1B4_1463	0.69	+2.9
1,678,352	+		Pf1N1B4_1463	0.70	+2.1
1,678,352	+		Pf1N1B4_1463	0.70	+3.9
1,678,352	+		Pf1N1B4_1463	0.70	+1.7
1,678,353	-		Pf1N1B4_1463	0.70	+2.4
1,678,353	-		Pf1N1B4_1463	0.70	+1.9
1,678,353	-		Pf1N1B4_1463	0.70	+3.3
1,678,353	-		Pf1N1B4_1463	0.70	+2.9
1,678,386	-		Pf1N1B4_1463	0.73	+2.9
1,678,386	-		Pf1N1B4_1463	0.73	+2.2
1,678,386	-		Pf1N1B4_1463	0.73	+2.5