Experiment: 5-Hydroxymethylfurfural 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1364 and Pf1N1B4_1365 are separated by 106 nucleotides Pf1N1B4_1365 and Pf1N1B4_1366 are separated by 0 nucleotides Pf1N1B4_1366 and Pf1N1B4_1367 are separated by 123 nucleotides
Pf1N1B4_1364 - Lipase precursor (EC 3.1.1.3), at 1,562,928 to 1,563,818
_1364
Pf1N1B4_1365 - Quaternary ammonium compound-resistance protein SugE, at 1,563,925 to 1,564,230
_1365
Pf1N1B4_1366 - FMN-dependent NADH-azoreductase, at 1,564,231 to 1,564,869
_1366
Pf1N1B4_1367 - Glycine cleavage system transcriptional activator, at 1,564,993 to 1,565,934
_1367
Position (kb)
1564
1565 Strain fitness (log2 ratio)
-2
-1
0
1 at 1563.412 kb on - strand, within Pf1N1B4_1364 at 1563.412 kb on - strand, within Pf1N1B4_1364 at 1563.459 kb on - strand, within Pf1N1B4_1364 at 1563.459 kb on - strand, within Pf1N1B4_1364 at 1563.459 kb on - strand, within Pf1N1B4_1364 at 1563.459 kb on - strand, within Pf1N1B4_1364 at 1563.459 kb on - strand, within Pf1N1B4_1364 at 1563.466 kb on + strand, within Pf1N1B4_1364 at 1563.466 kb on + strand, within Pf1N1B4_1364 at 1563.466 kb on + strand, within Pf1N1B4_1364 at 1563.466 kb on + strand, within Pf1N1B4_1364 at 1563.467 kb on - strand, within Pf1N1B4_1364 at 1563.730 kb on + strand at 1563.736 kb on + strand at 1563.914 kb on + strand at 1563.914 kb on + strand at 1563.915 kb on - strand at 1563.952 kb on + strand at 1564.101 kb on - strand, within Pf1N1B4_1365 at 1564.101 kb on - strand, within Pf1N1B4_1365 at 1564.166 kb on + strand, within Pf1N1B4_1365 at 1564.167 kb on - strand, within Pf1N1B4_1365 at 1564.167 kb on - strand, within Pf1N1B4_1365 at 1564.167 kb on - strand, within Pf1N1B4_1365 at 1564.232 kb on + strand at 1564.232 kb on + strand at 1564.232 kb on + strand at 1564.233 kb on - strand at 1564.233 kb on - strand at 1564.233 kb on - strand at 1564.233 kb on - strand at 1564.479 kb on - strand, within Pf1N1B4_1366 at 1564.479 kb on - strand, within Pf1N1B4_1366 at 1564.577 kb on + strand, within Pf1N1B4_1366 at 1564.577 kb on + strand at 1564.578 kb on - strand, within Pf1N1B4_1366 at 1564.578 kb on - strand, within Pf1N1B4_1366 at 1564.578 kb on - strand at 1564.989 kb on + strand at 1564.990 kb on - strand at 1565.459 kb on - strand, within Pf1N1B4_1367 at 1565.459 kb on - strand, within Pf1N1B4_1367 at 1565.494 kb on + strand, within Pf1N1B4_1367 at 1565.494 kb on + strand, within Pf1N1B4_1367 at 1565.494 kb on + strand, within Pf1N1B4_1367 at 1565.575 kb on + strand, within Pf1N1B4_1367 at 1565.575 kb on + strand, within Pf1N1B4_1367 at 1565.576 kb on - strand, within Pf1N1B4_1367 at 1565.576 kb on - strand, within Pf1N1B4_1367 at 1565.650 kb on + strand, within Pf1N1B4_1367 at 1565.650 kb on + strand, within Pf1N1B4_1367 at 1565.792 kb on - strand, within Pf1N1B4_1367 at 1565.792 kb on - strand, within Pf1N1B4_1367
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 2.5 mM remove 1,563,412 - Pf1N1B4_1364 0.54 +0.4 1,563,412 - Pf1N1B4_1364 0.54 +0.6 1,563,459 - Pf1N1B4_1364 0.60 -0.7 1,563,459 - Pf1N1B4_1364 0.60 -0.9 1,563,459 - Pf1N1B4_1364 0.60 +0.4 1,563,459 - Pf1N1B4_1364 0.60 +0.7 1,563,459 - Pf1N1B4_1364 0.60 -0.1 1,563,466 + Pf1N1B4_1364 0.60 -0.1 1,563,466 + Pf1N1B4_1364 0.60 -0.4 1,563,466 + Pf1N1B4_1364 0.60 +1.4 1,563,466 + Pf1N1B4_1364 0.60 +0.8 1,563,467 - Pf1N1B4_1364 0.60 +0.1 1,563,730 + -1.0 1,563,736 + +0.4 1,563,914 + -0.6 1,563,914 + -0.9 1,563,915 - -1.2 1,563,952 + +0.5 1,564,101 - Pf1N1B4_1365 0.58 +1.1 1,564,101 - Pf1N1B4_1365 0.58 +0.4 1,564,166 + Pf1N1B4_1365 0.79 +1.2 1,564,167 - Pf1N1B4_1365 0.79 +0.1 1,564,167 - Pf1N1B4_1365 0.79 -0.7 1,564,167 - Pf1N1B4_1365 0.79 +0.7 1,564,232 + -2.1 1,564,232 + -0.4 1,564,232 + -0.6 1,564,233 - +1.7 1,564,233 - -1.4 1,564,233 - -0.5 1,564,233 - +1.1 1,564,479 - Pf1N1B4_1366 0.39 -1.9 1,564,479 - Pf1N1B4_1366 0.39 +0.1 1,564,577 + Pf1N1B4_1366 0.54 +0.3 1,564,577 + +0.1 1,564,578 - Pf1N1B4_1366 0.54 -1.1 1,564,578 - Pf1N1B4_1366 0.54 -1.2 1,564,578 - +1.1 1,564,989 + +0.1 1,564,990 - -0.7 1,565,459 - Pf1N1B4_1367 0.49 +0.3 1,565,459 - Pf1N1B4_1367 0.49 -0.1 1,565,494 + Pf1N1B4_1367 0.53 +0.4 1,565,494 + Pf1N1B4_1367 0.53 +0.7 1,565,494 + Pf1N1B4_1367 0.53 +0.1 1,565,575 + Pf1N1B4_1367 0.62 +0.4 1,565,575 + Pf1N1B4_1367 0.62 +0.1 1,565,576 - Pf1N1B4_1367 0.62 -0.5 1,565,576 - Pf1N1B4_1367 0.62 +0.4 1,565,650 + Pf1N1B4_1367 0.70 +0.4 1,565,650 + Pf1N1B4_1367 0.70 +0.1 1,565,792 - Pf1N1B4_1367 0.85 +0.1 1,565,792 - Pf1N1B4_1367 0.85 -1.7
Or see this region's nucleotide sequence