Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07755

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07745 and MMP_RS07750 are separated by 267 nucleotidesMMP_RS07750 and MMP_RS07755 are separated by 20 nucleotidesMMP_RS07755 and MMP_RS07760 are separated by 132 nucleotides MMP_RS07745: MMP_RS07745 - pyruvate ferredoxin oxidoreductase subunit gamma, at 1,465,867 to 1,466,397 _RS07745 MMP_RS07750: MMP_RS07750 - DUF357 domain-containing protein, at 1,466,665 to 1,466,970 _RS07750 MMP_RS07755: MMP_RS07755 - DUF555 domain-containing protein, at 1,466,991 to 1,467,332 _RS07755 MMP_RS07760: MMP_RS07760 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 1,467,465 to 1,468,760 _RS07760 Position (kb) 1466 1467 1468Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1466.148 kb on - strandat 1466.189 kb on + strandat 1466.474 kb on + strandat 1466.534 kb on + strandat 1466.574 kb on + strandat 1466.583 kb on + strandat 1466.583 kb on + strandat 1466.588 kb on - strandat 1466.682 kb on - strandat 1466.683 kb on + strandat 1466.843 kb on - strand, within MMP_RS07750at 1466.860 kb on + strand, within MMP_RS07750at 1466.860 kb on + strand, within MMP_RS07750at 1466.860 kb on + strand, within MMP_RS07750at 1466.862 kb on + strand, within MMP_RS07750at 1466.885 kb on + strand, within MMP_RS07750at 1466.928 kb on - strand, within MMP_RS07750at 1466.934 kb on + strand, within MMP_RS07750at 1466.934 kb on + strand, within MMP_RS07750at 1467.062 kb on + strand, within MMP_RS07755at 1467.203 kb on + strand, within MMP_RS07755at 1467.368 kb on - strandat 1467.427 kb on - strandat 1467.462 kb on + strandat 1468.156 kb on + strandat 1468.242 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
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1,466,148 - -0.6
1,466,189 + +0.2
1,466,474 + -0.7
1,466,534 + -0.4
1,466,574 + +0.1
1,466,583 + -0.4
1,466,583 + +0.4
1,466,588 - +1.6
1,466,682 - -0.3
1,466,683 + -0.8
1,466,843 - MMP_RS07750 0.58 -2.7
1,466,860 + MMP_RS07750 0.64 -3.6
1,466,860 + MMP_RS07750 0.64 -3.5
1,466,860 + MMP_RS07750 0.64 -4.4
1,466,862 + MMP_RS07750 0.64 -4.2
1,466,885 + MMP_RS07750 0.72 -4.6
1,466,928 - MMP_RS07750 0.86 -4.4
1,466,934 + MMP_RS07750 0.88 -3.1
1,466,934 + MMP_RS07750 0.88 -2.7
1,467,062 + MMP_RS07755 0.21 -3.4
1,467,203 + MMP_RS07755 0.62 -3.9
1,467,368 - +1.1
1,467,427 - -1.4
1,467,462 + +0.3
1,468,156 + -1.6
1,468,242 - -1.1

Or see this region's nucleotide sequence