Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22215 and HSERO_RS22220 are separated by 134 nucleotides HSERO_RS22220 and HSERO_RS22225 are separated by 134 nucleotides
HSERO_RS22215: HSERO_RS22215 - branched-chain amino acid ABC transporter permease, at 5,079,526 to 5,080,497
_RS22215
HSERO_RS22220: HSERO_RS22220 - D-ribose transporter ATP-binding protein, at 5,080,632 to 5,082,146
_RS22220
HSERO_RS22225: HSERO_RS22225 - ABC transporter substrate-binding protein, at 5,082,281 to 5,083,258
_RS22225
Position (kb)
5080
5081
5082
5083 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 5079.818 kb on + strand, within HSERO_RS22215 at 5079.825 kb on + strand, within HSERO_RS22215 at 5079.826 kb on - strand, within HSERO_RS22215 at 5080.019 kb on - strand, within HSERO_RS22215 at 5080.441 kb on - strand at 5080.478 kb on + strand at 5080.481 kb on - strand at 5080.685 kb on - strand at 5080.698 kb on + strand at 5080.712 kb on - strand at 5080.769 kb on + strand at 5080.771 kb on + strand at 5080.895 kb on + strand, within HSERO_RS22220 at 5080.900 kb on + strand, within HSERO_RS22220 at 5081.029 kb on - strand, within HSERO_RS22220 at 5081.250 kb on - strand, within HSERO_RS22220 at 5081.475 kb on + strand, within HSERO_RS22220 at 5081.483 kb on + strand, within HSERO_RS22220 at 5081.503 kb on + strand, within HSERO_RS22220 at 5081.503 kb on + strand, within HSERO_RS22220 at 5081.511 kb on - strand, within HSERO_RS22220 at 5081.643 kb on - strand, within HSERO_RS22220 at 5081.684 kb on + strand, within HSERO_RS22220 at 5081.853 kb on - strand, within HSERO_RS22220 at 5081.985 kb on - strand, within HSERO_RS22220 at 5081.987 kb on + strand, within HSERO_RS22220 at 5081.987 kb on + strand, within HSERO_RS22220 at 5082.054 kb on - strand at 5082.219 kb on - strand at 5082.460 kb on + strand, within HSERO_RS22225 at 5082.779 kb on + strand, within HSERO_RS22225 at 5082.915 kb on + strand, within HSERO_RS22225 at 5082.941 kb on - strand, within HSERO_RS22225 at 5082.946 kb on + strand, within HSERO_RS22225 at 5082.980 kb on + strand, within HSERO_RS22225
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 5,079,818 + HSERO_RS22215 0.30 -4.0 5,079,825 + HSERO_RS22215 0.31 -3.2 5,079,826 - HSERO_RS22215 0.31 -3.2 5,080,019 - HSERO_RS22215 0.51 -1.2 5,080,441 - -3.6 5,080,478 + -4.0 5,080,481 - -3.1 5,080,685 - -5.3 5,080,698 + -4.5 5,080,712 - -2.0 5,080,769 + -2.7 5,080,771 + -4.1 5,080,895 + HSERO_RS22220 0.17 -5.2 5,080,900 + HSERO_RS22220 0.18 -2.9 5,081,029 - HSERO_RS22220 0.26 -3.1 5,081,250 - HSERO_RS22220 0.41 -2.8 5,081,475 + HSERO_RS22220 0.56 -4.4 5,081,483 + HSERO_RS22220 0.56 -5.1 5,081,503 + HSERO_RS22220 0.57 -2.7 5,081,503 + HSERO_RS22220 0.57 -3.1 5,081,511 - HSERO_RS22220 0.58 -4.8 5,081,643 - HSERO_RS22220 0.67 -3.8 5,081,684 + HSERO_RS22220 0.69 -3.3 5,081,853 - HSERO_RS22220 0.81 -3.2 5,081,985 - HSERO_RS22220 0.89 -2.5 5,081,987 + HSERO_RS22220 0.89 -1.2 5,081,987 + HSERO_RS22220 0.89 -4.1 5,082,054 - -3.1 5,082,219 - -2.0 5,082,460 + HSERO_RS22225 0.18 -4.1 5,082,779 + HSERO_RS22225 0.51 -1.9 5,082,915 + HSERO_RS22225 0.65 -6.1 5,082,941 - HSERO_RS22225 0.67 -3.9 5,082,946 + HSERO_RS22225 0.68 -5.4 5,082,980 + HSERO_RS22225 0.71 -3.7
Or see this region's nucleotide sequence