Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03822

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03821 and CCNA_03822 are separated by 12 nucleotidesCCNA_03822 and CCNA_03823 are separated by 82 nucleotidesCCNA_03823 and CCNA_03824 are separated by 4 nucleotides CCNA_03821: CCNA_03821 - exodeoxyribonuclease III, at 3,987,369 to 3,988,175 _03821 CCNA_03822: CCNA_03822 - formamidopyrimidine-DNA glycosylase, at 3,988,188 to 3,989,051 _03822 CCNA_03823: CCNA_03823 - ubiquinone/menaquinone biosynthesis methyltransferase UbiE, at 3,989,134 to 3,989,892 _03823 CCNA_03824: CCNA_03824 - 2-polyprenylphenol 6-hydroxylase accessory protein UbiB, at 3,989,897 to 3,991,405 _03824 Position (kb) 3988 3989 3990Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3987.234 kb on + strandat 3987.289 kb on + strandat 3987.290 kb on + strandat 3987.307 kb on + strandat 3987.359 kb on + strandat 3987.385 kb on - strandat 3987.403 kb on - strandat 3987.410 kb on + strandat 3987.415 kb on + strandat 3987.428 kb on - strandat 3987.450 kb on + strand, within CCNA_03821at 3987.451 kb on + strand, within CCNA_03821at 3987.458 kb on - strand, within CCNA_03821at 3987.458 kb on - strand, within CCNA_03821at 3987.459 kb on - strand, within CCNA_03821at 3987.474 kb on - strand, within CCNA_03821at 3987.572 kb on + strand, within CCNA_03821at 3987.604 kb on + strand, within CCNA_03821at 3987.630 kb on + strand, within CCNA_03821at 3987.658 kb on - strand, within CCNA_03821at 3987.688 kb on - strand, within CCNA_03821at 3987.706 kb on + strand, within CCNA_03821at 3987.706 kb on + strand, within CCNA_03821at 3987.708 kb on + strand, within CCNA_03821at 3987.714 kb on - strand, within CCNA_03821at 3987.714 kb on - strand, within CCNA_03821at 3987.716 kb on + strand, within CCNA_03821at 3987.767 kb on - strand, within CCNA_03821at 3987.767 kb on - strand, within CCNA_03821at 3987.767 kb on - strand, within CCNA_03821at 3987.771 kb on + strand, within CCNA_03821at 3987.782 kb on + strand, within CCNA_03821at 3987.784 kb on - strand, within CCNA_03821at 3987.788 kb on + strand, within CCNA_03821at 3987.796 kb on - strand, within CCNA_03821at 3987.796 kb on - strand, within CCNA_03821at 3987.796 kb on - strand, within CCNA_03821at 3987.818 kb on + strand, within CCNA_03821at 3987.826 kb on - strand, within CCNA_03821at 3987.826 kb on - strand, within CCNA_03821at 3987.826 kb on - strand, within CCNA_03821at 3987.831 kb on - strand, within CCNA_03821at 3987.846 kb on + strand, within CCNA_03821at 3987.880 kb on + strand, within CCNA_03821at 3987.888 kb on - strand, within CCNA_03821at 3987.888 kb on - strand, within CCNA_03821at 3987.888 kb on - strand, within CCNA_03821at 3987.912 kb on - strand, within CCNA_03821at 3987.917 kb on + strand, within CCNA_03821at 3987.917 kb on + strand, within CCNA_03821at 3987.925 kb on - strand, within CCNA_03821at 3987.942 kb on - strand, within CCNA_03821at 3988.024 kb on - strand, within CCNA_03821at 3988.035 kb on - strand, within CCNA_03821at 3988.049 kb on + strand, within CCNA_03821at 3988.049 kb on + strand, within CCNA_03821at 3988.054 kb on + strand, within CCNA_03821at 3988.054 kb on + strand, within CCNA_03821at 3988.054 kb on + strand, within CCNA_03821at 3988.062 kb on - strand, within CCNA_03821at 3988.062 kb on - strand, within CCNA_03821at 3988.062 kb on - strand, within CCNA_03821at 3988.062 kb on - strand, within CCNA_03821at 3988.062 kb on - strand, within CCNA_03821at 3988.064 kb on + strand, within CCNA_03821at 3988.067 kb on - strand, within CCNA_03821at 3988.080 kb on - strand, within CCNA_03821at 3988.085 kb on - strand, within CCNA_03821at 3988.091 kb on + strand, within CCNA_03821at 3988.118 kb on + strandat 3988.159 kb on - strandat 3988.159 kb on - strandat 3988.169 kb on + strandat 3988.171 kb on - strandat 3988.199 kb on + strandat 3988.199 kb on - strandat 3988.209 kb on + strandat 3988.217 kb on - strandat 3988.217 kb on - strandat 3988.217 kb on - strandat 3988.217 kb on - strandat 3988.236 kb on - strandat 3988.252 kb on + strandat 3988.254 kb on - strandat 3988.260 kb on - strandat 3988.260 kb on - strandat 3988.283 kb on - strand, within CCNA_03822at 3988.306 kb on - strand, within CCNA_03822at 3988.315 kb on + strand, within CCNA_03822at 3988.323 kb on - strand, within CCNA_03822at 3988.355 kb on + strand, within CCNA_03822at 3988.363 kb on - strand, within CCNA_03822at 3988.363 kb on - strand, within CCNA_03822at 3988.437 kb on + strand, within CCNA_03822at 3988.447 kb on + strand, within CCNA_03822at 3988.473 kb on + strand, within CCNA_03822at 3988.473 kb on + strand, within CCNA_03822at 3988.654 kb on + strand, within CCNA_03822at 3988.654 kb on + strand, within CCNA_03822at 3988.662 kb on - strand, within CCNA_03822at 3988.662 kb on - strand, within CCNA_03822at 3988.664 kb on + strand, within CCNA_03822at 3988.672 kb on - strand, within CCNA_03822at 3988.673 kb on + strand, within CCNA_03822at 3988.706 kb on - strand, within CCNA_03822at 3988.721 kb on - strand, within CCNA_03822at 3988.728 kb on - strand, within CCNA_03822at 3988.738 kb on - strand, within CCNA_03822at 3988.830 kb on - strand, within CCNA_03822at 3988.830 kb on - strand, within CCNA_03822at 3988.842 kb on - strand, within CCNA_03822at 3988.865 kb on + strand, within CCNA_03822at 3988.870 kb on + strand, within CCNA_03822at 3988.923 kb on - strand, within CCNA_03822at 3988.938 kb on + strand, within CCNA_03822at 3988.950 kb on + strand, within CCNA_03822at 3988.955 kb on + strand, within CCNA_03822at 3988.958 kb on - strand, within CCNA_03822at 3988.980 kb on + strandat 3988.984 kb on - strandat 3989.005 kb on + strandat 3989.033 kb on - strandat 3989.034 kb on - strandat 3989.082 kb on + strandat 3989.121 kb on + strandat 3989.129 kb on - strandat 3989.877 kb on + strandat 3989.887 kb on + strandat 3989.887 kb on + strandat 3989.887 kb on + strandat 3989.887 kb on + strandat 3989.887 kb on + strandat 3989.895 kb on - strandat 3989.905 kb on + strandat 3989.936 kb on + strandat 3989.942 kb on + strandat 3989.950 kb on - strandat 3989.966 kb on - strandat 3990.020 kb on + strandat 3990.036 kb on - strandat 3990.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml
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3,987,234 + +1.0
3,987,289 + +0.3
3,987,290 + +0.7
3,987,307 + -1.4
3,987,359 + +0.1
3,987,385 - -1.6
3,987,403 - +0.3
3,987,410 + -0.8
3,987,415 + -0.1
3,987,428 - +0.4
3,987,450 + CCNA_03821 0.10 -0.6
3,987,451 + CCNA_03821 0.10 -0.1
3,987,458 - CCNA_03821 0.11 +1.6
3,987,458 - CCNA_03821 0.11 -0.5
3,987,459 - CCNA_03821 0.11 -3.2
3,987,474 - CCNA_03821 0.13 +2.0
3,987,572 + CCNA_03821 0.25 -1.4
3,987,604 + CCNA_03821 0.29 +0.5
3,987,630 + CCNA_03821 0.32 -1.6
3,987,658 - CCNA_03821 0.36 -1.5
3,987,688 - CCNA_03821 0.40 -2.7
3,987,706 + CCNA_03821 0.42 -0.7
3,987,706 + CCNA_03821 0.42 -1.1
3,987,708 + CCNA_03821 0.42 -1.1
3,987,714 - CCNA_03821 0.43 +0.7
3,987,714 - CCNA_03821 0.43 +2.4
3,987,716 + CCNA_03821 0.43 -1.0
3,987,767 - CCNA_03821 0.49 +1.0
3,987,767 - CCNA_03821 0.49 -0.2
3,987,767 - CCNA_03821 0.49 +0.3
3,987,771 + CCNA_03821 0.50 -0.1
3,987,782 + CCNA_03821 0.51 -1.4
3,987,784 - CCNA_03821 0.51 -0.9
3,987,788 + CCNA_03821 0.52 +2.7
3,987,796 - CCNA_03821 0.53 +1.6
3,987,796 - CCNA_03821 0.53 -1.2
3,987,796 - CCNA_03821 0.53 +0.9
3,987,818 + CCNA_03821 0.56 +0.8
3,987,826 - CCNA_03821 0.57 -0.5
3,987,826 - CCNA_03821 0.57 -0.0
3,987,826 - CCNA_03821 0.57 +1.3
3,987,831 - CCNA_03821 0.57 -2.4
3,987,846 + CCNA_03821 0.59 -2.5
3,987,880 + CCNA_03821 0.63 -2.3
3,987,888 - CCNA_03821 0.64 -0.0
3,987,888 - CCNA_03821 0.64 +0.1
3,987,888 - CCNA_03821 0.64 -0.2
3,987,912 - CCNA_03821 0.67 +0.3
3,987,917 + CCNA_03821 0.68 +0.3
3,987,917 + CCNA_03821 0.68 +0.0
3,987,925 - CCNA_03821 0.69 +0.5
3,987,942 - CCNA_03821 0.71 +2.4
3,988,024 - CCNA_03821 0.81 -0.8
3,988,035 - CCNA_03821 0.83 -0.6
3,988,049 + CCNA_03821 0.84 -0.8
3,988,049 + CCNA_03821 0.84 -1.1
3,988,054 + CCNA_03821 0.85 -1.2
3,988,054 + CCNA_03821 0.85 +0.1
3,988,054 + CCNA_03821 0.85 -1.8
3,988,062 - CCNA_03821 0.86 -1.2
3,988,062 - CCNA_03821 0.86 -2.1
3,988,062 - CCNA_03821 0.86 -0.5
3,988,062 - CCNA_03821 0.86 -0.5
3,988,062 - CCNA_03821 0.86 -0.9
3,988,064 + CCNA_03821 0.86 -1.8
3,988,067 - CCNA_03821 0.86 -0.7
3,988,080 - CCNA_03821 0.88 -1.5
3,988,085 - CCNA_03821 0.89 -0.7
3,988,091 + CCNA_03821 0.89 -0.1
3,988,118 + -1.1
3,988,159 - -0.6
3,988,159 - -0.7
3,988,169 + -0.2
3,988,171 - +0.8
3,988,199 + -0.9
3,988,199 - -1.5
3,988,209 + -0.3
3,988,217 - -1.1
3,988,217 - -2.8
3,988,217 - -0.0
3,988,217 - -2.1
3,988,236 - -1.0
3,988,252 + +2.2
3,988,254 - -0.8
3,988,260 - -1.5
3,988,260 - +0.1
3,988,283 - CCNA_03822 0.11 -0.4
3,988,306 - CCNA_03822 0.14 -1.5
3,988,315 + CCNA_03822 0.15 -2.5
3,988,323 - CCNA_03822 0.16 +1.3
3,988,355 + CCNA_03822 0.19 -0.7
3,988,363 - CCNA_03822 0.20 -1.6
3,988,363 - CCNA_03822 0.20 -1.1
3,988,437 + CCNA_03822 0.29 -0.2
3,988,447 + CCNA_03822 0.30 -0.7
3,988,473 + CCNA_03822 0.33 +0.1
3,988,473 + CCNA_03822 0.33 -1.8
3,988,654 + CCNA_03822 0.54 +0.8
3,988,654 + CCNA_03822 0.54 -0.7
3,988,662 - CCNA_03822 0.55 +2.1
3,988,662 - CCNA_03822 0.55 +0.5
3,988,664 + CCNA_03822 0.55 -0.7
3,988,672 - CCNA_03822 0.56 -1.6
3,988,673 + CCNA_03822 0.56 +0.7
3,988,706 - CCNA_03822 0.60 +0.5
3,988,721 - CCNA_03822 0.62 -0.2
3,988,728 - CCNA_03822 0.62 +0.8
3,988,738 - CCNA_03822 0.64 -1.0
3,988,830 - CCNA_03822 0.74 -0.2
3,988,830 - CCNA_03822 0.74 +1.4
3,988,842 - CCNA_03822 0.76 -0.0
3,988,865 + CCNA_03822 0.78 -1.7
3,988,870 + CCNA_03822 0.79 +0.9
3,988,923 - CCNA_03822 0.85 -1.4
3,988,938 + CCNA_03822 0.87 +1.4
3,988,950 + CCNA_03822 0.88 -0.5
3,988,955 + CCNA_03822 0.89 +0.1
3,988,958 - CCNA_03822 0.89 -0.5
3,988,980 + -1.8
3,988,984 - -0.7
3,989,005 + +1.4
3,989,033 - -1.0
3,989,034 - +1.4
3,989,082 + +0.9
3,989,121 + -2.0
3,989,129 - +0.5
3,989,877 + +1.9
3,989,887 + -0.2
3,989,887 + +1.1
3,989,887 + +0.2
3,989,887 + +0.5
3,989,887 + +1.0
3,989,895 - -0.8
3,989,905 + -0.9
3,989,936 + +3.3
3,989,942 + +2.8
3,989,950 - -0.7
3,989,966 - +1.6
3,990,020 + +3.1
3,990,036 - -1.1
3,990,036 - +1.9

Or see this region's nucleotide sequence