Experiment: PYE with Paraquat dichloride 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03723 and CCNA_03724 are separated by 90 nucleotides CCNA_03724 and CCNA_03725 are separated by 85 nucleotides CCNA_03725 and CCNA_03726 are separated by 0 nucleotides
CCNA_03723: CCNA_03723 - PaaI thioesterase family protein, at 3,891,390 to 3,891,827
_03723
CCNA_03724: CCNA_03724 - hypothetical protein, at 3,891,918 to 3,892,646
_03724
CCNA_03725: CCNA_03725 - ATP-dependent DNA ligase, at 3,892,732 to 3,894,357
_03725
CCNA_03726: CCNA_03726 - 3-amino-5-hydroxybenzoic acid synthase family, at 3,894,358 to 3,895,518
_03726
Position (kb)
3892
3893
3894
3895 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3891.771 kb on - strand, within CCNA_03723 at 3891.834 kb on - strand at 3891.892 kb on + strand at 3891.923 kb on - strand at 3891.923 kb on - strand at 3891.952 kb on + strand at 3891.952 kb on - strand at 3891.969 kb on + strand at 3891.989 kb on - strand at 3892.036 kb on - strand, within CCNA_03724 at 3892.036 kb on - strand, within CCNA_03724 at 3892.103 kb on + strand, within CCNA_03724 at 3892.119 kb on - strand, within CCNA_03724 at 3892.193 kb on - strand, within CCNA_03724 at 3892.204 kb on + strand, within CCNA_03724 at 3892.211 kb on - strand, within CCNA_03724 at 3892.211 kb on - strand, within CCNA_03724 at 3892.238 kb on + strand, within CCNA_03724 at 3892.250 kb on + strand, within CCNA_03724 at 3892.292 kb on + strand, within CCNA_03724 at 3892.302 kb on - strand, within CCNA_03724 at 3892.316 kb on + strand, within CCNA_03724 at 3892.320 kb on + strand, within CCNA_03724 at 3892.380 kb on - strand at 3892.453 kb on + strand, within CCNA_03724 at 3892.453 kb on + strand, within CCNA_03724 at 3892.461 kb on - strand, within CCNA_03724 at 3892.461 kb on - strand, within CCNA_03724 at 3892.461 kb on - strand, within CCNA_03724 at 3892.461 kb on - strand, within CCNA_03724 at 3892.461 kb on - strand, within CCNA_03724 at 3892.461 kb on - strand, within CCNA_03724 at 3892.461 kb on - strand, within CCNA_03724 at 3892.470 kb on - strand, within CCNA_03724 at 3892.502 kb on + strand, within CCNA_03724 at 3892.510 kb on - strand, within CCNA_03724 at 3892.510 kb on - strand, within CCNA_03724 at 3892.635 kb on + strand at 3892.635 kb on + strand at 3892.640 kb on + strand at 3892.640 kb on + strand at 3892.640 kb on + strand at 3892.648 kb on - strand at 3892.686 kb on + strand at 3892.779 kb on - strand at 3892.779 kb on - strand at 3892.780 kb on + strand at 3892.798 kb on - strand at 3892.798 kb on - strand at 3892.817 kb on + strand at 3892.824 kb on - strand at 3892.840 kb on + strand at 3892.861 kb on + strand at 3892.861 kb on + strand at 3892.861 kb on + strand at 3892.861 kb on + strand at 3892.861 kb on + strand at 3892.869 kb on - strand at 3892.876 kb on + strand at 3892.894 kb on + strand at 3892.900 kb on + strand, within CCNA_03725 at 3892.937 kb on - strand, within CCNA_03725 at 3892.950 kb on - strand, within CCNA_03725 at 3892.960 kb on - strand, within CCNA_03725 at 3892.995 kb on + strand, within CCNA_03725 at 3892.995 kb on + strand, within CCNA_03725 at 3892.995 kb on + strand, within CCNA_03725 at 3893.003 kb on - strand, within CCNA_03725 at 3893.003 kb on - strand, within CCNA_03725 at 3893.005 kb on + strand, within CCNA_03725 at 3893.042 kb on + strand, within CCNA_03725 at 3893.050 kb on - strand, within CCNA_03725 at 3893.050 kb on - strand, within CCNA_03725 at 3893.051 kb on + strand, within CCNA_03725 at 3893.098 kb on + strand, within CCNA_03725 at 3893.114 kb on - strand, within CCNA_03725 at 3893.143 kb on + strand, within CCNA_03725 at 3893.176 kb on + strand, within CCNA_03725 at 3893.211 kb on + strand, within CCNA_03725 at 3893.219 kb on - strand, within CCNA_03725 at 3893.219 kb on - strand, within CCNA_03725 at 3893.256 kb on + strand, within CCNA_03725 at 3893.256 kb on + strand, within CCNA_03725 at 3893.277 kb on + strand, within CCNA_03725 at 3893.277 kb on + strand, within CCNA_03725 at 3893.277 kb on + strand, within CCNA_03725 at 3893.285 kb on - strand, within CCNA_03725 at 3893.285 kb on - strand, within CCNA_03725 at 3893.300 kb on + strand at 3893.308 kb on - strand, within CCNA_03725 at 3893.322 kb on + strand, within CCNA_03725 at 3893.353 kb on - strand, within CCNA_03725 at 3893.412 kb on + strand, within CCNA_03725 at 3893.489 kb on - strand, within CCNA_03725 at 3893.505 kb on - strand, within CCNA_03725 at 3893.557 kb on + strand, within CCNA_03725 at 3893.590 kb on + strand, within CCNA_03725 at 3893.611 kb on + strand, within CCNA_03725 at 3893.620 kb on + strand, within CCNA_03725 at 3893.620 kb on + strand, within CCNA_03725 at 3893.628 kb on - strand, within CCNA_03725 at 3893.676 kb on - strand, within CCNA_03725 at 3893.679 kb on + strand, within CCNA_03725 at 3893.686 kb on + strand, within CCNA_03725 at 3893.689 kb on - strand, within CCNA_03725 at 3893.699 kb on - strand, within CCNA_03725 at 3893.720 kb on - strand, within CCNA_03725 at 3893.769 kb on + strand, within CCNA_03725 at 3893.777 kb on - strand, within CCNA_03725 at 3893.777 kb on - strand, within CCNA_03725 at 3893.777 kb on - strand, within CCNA_03725 at 3893.777 kb on - strand, within CCNA_03725 at 3893.777 kb on - strand, within CCNA_03725 at 3893.777 kb on - strand, within CCNA_03725 at 3893.777 kb on - strand, within CCNA_03725 at 3893.798 kb on - strand, within CCNA_03725 at 3893.805 kb on + strand, within CCNA_03725 at 3893.823 kb on + strand, within CCNA_03725 at 3893.835 kb on + strand, within CCNA_03725 at 3893.840 kb on + strand, within CCNA_03725 at 3893.840 kb on + strand, within CCNA_03725 at 3893.850 kb on + strand, within CCNA_03725 at 3893.857 kb on + strand, within CCNA_03725 at 3893.858 kb on - strand, within CCNA_03725 at 3893.859 kb on - strand, within CCNA_03725 at 3893.861 kb on + strand, within CCNA_03725 at 3893.869 kb on - strand, within CCNA_03725 at 3893.915 kb on - strand, within CCNA_03725 at 3893.919 kb on - strand, within CCNA_03725 at 3893.931 kb on + strand, within CCNA_03725 at 3893.974 kb on + strand, within CCNA_03725 at 3893.974 kb on + strand, within CCNA_03725 at 3893.974 kb on + strand, within CCNA_03725 at 3893.974 kb on + strand, within CCNA_03725 at 3893.982 kb on - strand, within CCNA_03725 at 3893.982 kb on - strand, within CCNA_03725 at 3893.982 kb on - strand, within CCNA_03725 at 3893.982 kb on - strand, within CCNA_03725 at 3894.000 kb on + strand, within CCNA_03725 at 3894.023 kb on - strand, within CCNA_03725 at 3894.024 kb on + strand, within CCNA_03725 at 3894.025 kb on + strand, within CCNA_03725 at 3894.025 kb on + strand, within CCNA_03725 at 3894.050 kb on + strand, within CCNA_03725 at 3894.070 kb on + strand, within CCNA_03725 at 3894.078 kb on - strand, within CCNA_03725 at 3894.079 kb on - strand, within CCNA_03725 at 3894.099 kb on - strand, within CCNA_03725 at 3894.103 kb on - strand, within CCNA_03725 at 3894.160 kb on + strand, within CCNA_03725 at 3894.162 kb on + strand, within CCNA_03725 at 3894.162 kb on + strand, within CCNA_03725 at 3894.167 kb on + strand, within CCNA_03725 at 3894.229 kb on + strand at 3894.263 kb on - strand at 3894.300 kb on + strand at 3894.308 kb on - strand at 3894.346 kb on + strand at 3894.351 kb on + strand at 3894.354 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml remove 3,891,771 - CCNA_03723 0.87 +1.7 3,891,834 - -0.4 3,891,892 + -0.2 3,891,923 - -1.1 3,891,923 - +0.0 3,891,952 + +0.2 3,891,952 - +1.5 3,891,969 + -1.3 3,891,989 - +0.8 3,892,036 - CCNA_03724 0.16 -0.3 3,892,036 - CCNA_03724 0.16 -1.7 3,892,103 + CCNA_03724 0.25 -0.3 3,892,119 - CCNA_03724 0.28 -2.7 3,892,193 - CCNA_03724 0.38 -2.3 3,892,204 + CCNA_03724 0.39 +0.7 3,892,211 - CCNA_03724 0.40 -0.7 3,892,211 - CCNA_03724 0.40 -1.0 3,892,238 + CCNA_03724 0.44 +0.6 3,892,250 + CCNA_03724 0.46 -1.1 3,892,292 + CCNA_03724 0.51 -0.7 3,892,302 - CCNA_03724 0.53 -1.4 3,892,316 + CCNA_03724 0.55 -2.6 3,892,320 + CCNA_03724 0.55 -0.9 3,892,380 - +1.1 3,892,453 + CCNA_03724 0.73 -0.9 3,892,453 + CCNA_03724 0.73 -2.9 3,892,461 - CCNA_03724 0.74 -1.1 3,892,461 - CCNA_03724 0.74 -1.1 3,892,461 - CCNA_03724 0.74 -0.2 3,892,461 - CCNA_03724 0.74 -0.6 3,892,461 - CCNA_03724 0.74 -2.5 3,892,461 - CCNA_03724 0.74 -1.5 3,892,461 - CCNA_03724 0.74 -0.4 3,892,470 - CCNA_03724 0.76 -0.7 3,892,502 + CCNA_03724 0.80 -0.7 3,892,510 - CCNA_03724 0.81 -0.5 3,892,510 - CCNA_03724 0.81 -0.5 3,892,635 + +0.0 3,892,635 + +2.4 3,892,640 + +0.9 3,892,640 + -1.8 3,892,640 + -0.8 3,892,648 - -0.1 3,892,686 + -1.2 3,892,779 - -2.7 3,892,779 - -0.1 3,892,780 + -0.1 3,892,798 - -2.1 3,892,798 - -0.3 3,892,817 + -1.3 3,892,824 - +0.4 3,892,840 + +2.2 3,892,861 + +0.8 3,892,861 + -0.5 3,892,861 + +0.9 3,892,861 + -1.2 3,892,861 + -0.1 3,892,869 - +0.1 3,892,876 + -0.2 3,892,894 + +0.1 3,892,900 + CCNA_03725 0.10 +0.3 3,892,937 - CCNA_03725 0.13 -0.4 3,892,950 - CCNA_03725 0.13 -0.4 3,892,960 - CCNA_03725 0.14 -0.3 3,892,995 + CCNA_03725 0.16 +0.5 3,892,995 + CCNA_03725 0.16 +1.2 3,892,995 + CCNA_03725 0.16 -1.9 3,893,003 - CCNA_03725 0.17 -1.8 3,893,003 - CCNA_03725 0.17 -1.8 3,893,005 + CCNA_03725 0.17 -1.0 3,893,042 + CCNA_03725 0.19 +0.7 3,893,050 - CCNA_03725 0.20 -1.1 3,893,050 - CCNA_03725 0.20 -0.2 3,893,051 + CCNA_03725 0.20 -0.2 3,893,098 + CCNA_03725 0.23 +0.8 3,893,114 - CCNA_03725 0.23 -0.9 3,893,143 + CCNA_03725 0.25 -1.5 3,893,176 + CCNA_03725 0.27 -2.3 3,893,211 + CCNA_03725 0.29 -0.6 3,893,219 - CCNA_03725 0.30 -1.8 3,893,219 - CCNA_03725 0.30 -1.0 3,893,256 + CCNA_03725 0.32 +0.6 3,893,256 + CCNA_03725 0.32 -0.6 3,893,277 + CCNA_03725 0.34 -1.1 3,893,277 + CCNA_03725 0.34 +0.2 3,893,277 + CCNA_03725 0.34 -2.0 3,893,285 - CCNA_03725 0.34 -0.7 3,893,285 - CCNA_03725 0.34 -1.0 3,893,300 + +0.9 3,893,308 - CCNA_03725 0.35 +0.3 3,893,322 + CCNA_03725 0.36 +0.6 3,893,353 - CCNA_03725 0.38 -1.5 3,893,412 + CCNA_03725 0.42 -2.0 3,893,489 - CCNA_03725 0.47 -0.3 3,893,505 - CCNA_03725 0.48 -0.3 3,893,557 + CCNA_03725 0.51 -0.5 3,893,590 + CCNA_03725 0.53 +0.2 3,893,611 + CCNA_03725 0.54 -1.5 3,893,620 + CCNA_03725 0.55 -1.7 3,893,620 + CCNA_03725 0.55 -0.9 3,893,628 - CCNA_03725 0.55 +0.4 3,893,676 - CCNA_03725 0.58 -1.0 3,893,679 + CCNA_03725 0.58 -0.4 3,893,686 + CCNA_03725 0.59 -0.6 3,893,689 - CCNA_03725 0.59 +0.8 3,893,699 - CCNA_03725 0.59 -0.1 3,893,720 - CCNA_03725 0.61 -1.4 3,893,769 + CCNA_03725 0.64 +0.8 3,893,777 - CCNA_03725 0.64 -1.4 3,893,777 - CCNA_03725 0.64 +0.5 3,893,777 - CCNA_03725 0.64 -3.1 3,893,777 - CCNA_03725 0.64 -0.5 3,893,777 - CCNA_03725 0.64 -2.2 3,893,777 - CCNA_03725 0.64 +0.3 3,893,777 - CCNA_03725 0.64 +0.3 3,893,798 - CCNA_03725 0.66 -0.4 3,893,805 + CCNA_03725 0.66 +0.2 3,893,823 + CCNA_03725 0.67 -1.0 3,893,835 + CCNA_03725 0.68 -0.8 3,893,840 + CCNA_03725 0.68 +1.1 3,893,840 + CCNA_03725 0.68 -0.3 3,893,850 + CCNA_03725 0.69 -1.2 3,893,857 + CCNA_03725 0.69 -0.4 3,893,858 - CCNA_03725 0.69 -0.9 3,893,859 - CCNA_03725 0.69 +2.0 3,893,861 + CCNA_03725 0.69 -1.3 3,893,869 - CCNA_03725 0.70 +3.2 3,893,915 - CCNA_03725 0.73 -0.8 3,893,919 - CCNA_03725 0.73 -1.6 3,893,931 + CCNA_03725 0.74 -0.5 3,893,974 + CCNA_03725 0.76 -1.0 3,893,974 + CCNA_03725 0.76 +2.1 3,893,974 + CCNA_03725 0.76 +1.6 3,893,974 + CCNA_03725 0.76 -0.8 3,893,982 - CCNA_03725 0.77 -0.4 3,893,982 - CCNA_03725 0.77 +0.0 3,893,982 - CCNA_03725 0.77 -1.0 3,893,982 - CCNA_03725 0.77 -0.1 3,894,000 + CCNA_03725 0.78 +0.9 3,894,023 - CCNA_03725 0.79 -0.1 3,894,024 + CCNA_03725 0.79 -1.7 3,894,025 + CCNA_03725 0.80 -1.9 3,894,025 + CCNA_03725 0.80 -2.2 3,894,050 + CCNA_03725 0.81 -1.3 3,894,070 + CCNA_03725 0.82 +0.6 3,894,078 - CCNA_03725 0.83 -0.4 3,894,079 - CCNA_03725 0.83 +0.2 3,894,099 - CCNA_03725 0.84 +0.7 3,894,103 - CCNA_03725 0.84 -1.3 3,894,160 + CCNA_03725 0.88 -1.8 3,894,162 + CCNA_03725 0.88 -0.8 3,894,162 + CCNA_03725 0.88 -0.0 3,894,167 + CCNA_03725 0.88 -2.4 3,894,229 + -1.2 3,894,263 - +1.3 3,894,300 + +0.1 3,894,308 - -0.0 3,894,346 + +0.4 3,894,351 + -0.7 3,894,354 - -0.7
Or see this region's nucleotide sequence