Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03453

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.03 mg/ml
3,615,727	+		CCNA_03450	0.76	+1.1
3,615,727	+		CCNA_03450	0.76	-1.2
3,615,732	+		CCNA_03450	0.77	-0.8
3,615,732	+		CCNA_03450	0.77	+1.4
3,615,732	+		CCNA_03450	0.77	+0.8
3,615,732	+		CCNA_03450	0.77	-1.4
3,615,732	+		CCNA_03450	0.77	-0.0
3,615,732	+		CCNA_03450	0.77	+0.4
3,615,732	+		CCNA_03450	0.77	-0.9
3,615,732	+		CCNA_03450	0.77	+0.3
3,615,802	-				-0.9
3,615,802	-				-0.7
3,615,802	-				+0.3
3,615,804	+				-1.3
3,615,804	+				-0.2
3,615,804	+				-1.8
3,615,804	+				+0.1
3,615,804	+				+2.2
3,615,804	+				+0.6
3,615,804	+				+0.8
3,615,804	+				-0.3
3,615,812	-				+0.8
3,615,812	-				-0.4
3,615,812	-				+0.9
3,615,812	-				-0.0
3,615,812	-				+0.4
3,615,817	-				-1.5
3,615,849	+				-1.0
3,615,891	+				-0.1
3,615,896	+				-1.6
3,615,898	+				-0.9
3,615,899	-				-0.7
3,615,948	-				-0.3
3,615,997	-				+0.9
3,615,997	-				+0.9
3,616,001	+				-1.8
3,616,001	+				-0.3
3,616,009	-				+0.6
3,616,009	-				-0.6
3,616,075	-				+0.2
3,616,075	-				-0.3
3,616,077	+				+1.0
3,616,085	-				+0.5
3,616,102	+				-0.8
3,616,102	+				-0.4
3,616,102	+				-1.4
3,616,102	+				-0.4
3,616,102	+				-1.0
3,616,102	+				-2.0
3,616,102	+				-0.3
3,616,102	+				-1.2
3,616,102	+				-0.2
3,616,102	+				-0.1
3,616,110	-				+1.2
3,616,123	-				-1.1
3,616,138	+				-0.2
3,616,146	+				+0.6
3,616,146	-				-2.2
3,616,146	-				-1.0
3,616,146	-				+0.1
3,616,161	+				-0.4
3,616,163	+				+1.0
3,616,178	+				+0.1
3,616,191	-				-0.5
3,616,217	-				-2.0
3,616,257	-		CCNA_03451	0.25	-0.5
3,616,257	-		CCNA_03451	0.25	+0.6
3,616,263	+		CCNA_03451	0.28	+0.5
3,616,266	-		CCNA_03451	0.29	-0.1
3,616,285	-		CCNA_03451	0.37	-0.6
3,616,292	+		CCNA_03451	0.40	-1.8
3,616,292	+		CCNA_03451	0.40	+0.8
3,616,292	+		CCNA_03451	0.40	+2.0
3,616,314	-		CCNA_03451	0.50	-1.2
3,616,322	+		CCNA_03451	0.54	+0.4
3,616,330	-		CCNA_03451	0.57	-0.7
3,616,330	-		CCNA_03451	0.57	-1.5
3,616,366	-		CCNA_03451	0.73	-0.0
3,616,369	+		CCNA_03451	0.75	+0.3
3,616,378	+		CCNA_03451	0.79	+1.0
3,616,392	+		CCNA_03451	0.85	+3.2
3,616,392	+		CCNA_03451	0.85	-2.7
3,616,392	+		CCNA_03451	0.85	+0.3
3,616,392	+		CCNA_03451	0.85	+1.3
3,616,392	+		CCNA_03451	0.85	-1.1
3,616,392	+		CCNA_03451	0.85	+0.2
3,616,400	-		CCNA_03451	0.88	-1.2
3,616,400	-		CCNA_03451	0.88	-0.0
3,616,400	-		CCNA_03451	0.88	-0.7
3,616,400	-		CCNA_03451	0.88	+2.0
3,616,401	-		CCNA_03451	0.89	-0.1
3,616,416	+				+0.8
3,616,441	+				-0.1
3,616,441	+				-0.4
3,616,505	-		CCNA_03452	0.21	-0.9
3,616,505	-		CCNA_03452	0.21	+0.6
3,616,505	-		CCNA_03452	0.21	-0.6
3,616,505	-		CCNA_03452	0.21	-1.6
3,616,505	-		CCNA_03452	0.21	-1.3
3,616,505	-		CCNA_03452	0.21	-1.4
3,616,600	+		CCNA_03452	0.61	-1.7
3,616,610	+		CCNA_03452	0.65	-1.5
3,616,652	+		CCNA_03452	0.82	-1.7
3,616,696	-				-1.0
3,616,709	+				+0.3
3,616,709	+				-1.2
3,616,717	-				+0.9
3,616,765	-				+1.6
3,616,814	+		CCNA_03453	0.16	+2.0
3,616,814	+		CCNA_03453	0.16	+1.4
3,616,814	+		CCNA_03453	0.16	-1.1
3,616,822	-		CCNA_03453	0.17	+1.5
3,616,822	-		CCNA_03453	0.17	+0.5
3,616,822	-		CCNA_03453	0.17	+2.1
3,616,827	-		CCNA_03453	0.18	-0.0
3,616,832	-		CCNA_03453	0.19	+1.6
3,616,866	-		CCNA_03453	0.24	+2.5
3,616,893	+		CCNA_03453	0.29	-1.5
3,616,955	+		CCNA_03453	0.39	+0.2
3,617,030	+		CCNA_03453	0.50	+2.0
3,617,038	-		CCNA_03453	0.52	+1.6
3,617,038	-		CCNA_03453	0.52	+0.5
3,617,038	-		CCNA_03453	0.52	+1.2
3,617,046	-		CCNA_03453	0.53	+2.6
3,617,071	+		CCNA_03453	0.57	-0.6
3,617,079	-		CCNA_03453	0.58	+1.1
3,617,103	+				+0.6
3,617,116	-		CCNA_03453	0.64	+1.4
3,617,121	-		CCNA_03453	0.65	+2.3
3,617,127	+		CCNA_03453	0.66	-1.2
3,617,127	+		CCNA_03453	0.66	-0.4
3,617,127	+		CCNA_03453	0.66	+0.2
3,617,127	+		CCNA_03453	0.66	+0.5
3,617,135	-		CCNA_03453	0.67	-0.4
3,617,135	-		CCNA_03453	0.67	+1.3
3,617,135	-		CCNA_03453	0.67	+1.5
3,617,198	+		CCNA_03453	0.77	+0.4
3,617,206	-		CCNA_03453	0.78	+1.2
3,617,235	-		CCNA_03453	0.83	+0.7
3,617,310	+				-0.5
3,617,318	-				-1.2
3,617,363	+				-1.4
3,617,363	+				-2.3
3,617,371	-				+0.8
3,617,474	+				-1.3
3,617,489	-				-0.3
3,617,555	-				-0.6
3,617,555	-				-0.9
3,617,593	-				-1.8
3,617,602	+				-1.8
3,617,669	+				-0.6
3,617,669	+				+0.7
3,617,677	-				+0.7
3,617,677	-				-0.5
3,617,682	+				-0.9
3,617,690	-				-0.9
3,617,718	-		CCNA_03454	0.10	-0.8
3,617,755	+		CCNA_03454	0.14	-0.2
3,617,755	+		CCNA_03454	0.14	-0.8
3,617,755	+		CCNA_03454	0.14	-2.1
3,617,763	-		CCNA_03454	0.15	-0.3
3,617,763	-		CCNA_03454	0.15	-0.0
3,617,792	-		CCNA_03454	0.19	-0.7
3,617,801	+		CCNA_03454	0.20	+0.1
3,617,809	-		CCNA_03454	0.21	-0.2
3,617,813	+		CCNA_03454	0.21	-0.7
3,617,821	-		CCNA_03454	0.22	+0.1
3,617,827	-		CCNA_03454	0.23	-0.6
3,617,834	+		CCNA_03454	0.24	-0.7
3,617,834	+		CCNA_03454	0.24	-1.8
3,617,834	+				+2.0
3,617,842	-		CCNA_03454	0.25	-2.3
3,617,843	+		CCNA_03454	0.25	-0.7
3,617,843	+		CCNA_03454	0.25	-1.2
3,617,914	+		CCNA_03454	0.33	-0.6
3,617,937	+		CCNA_03454	0.36	+0.1
3,617,945	-		CCNA_03454	0.37	-0.6
3,617,983	+		CCNA_03454	0.41	-2.6
3,617,991	-		CCNA_03454	0.42	+0.2
3,618,031	+		CCNA_03454	0.47	+1.6
3,618,031	-		CCNA_03454	0.47	-0.4
3,618,064	+		CCNA_03454	0.51	-1.6
3,618,119	+		CCNA_03454	0.57	+0.6
3,618,147	+		CCNA_03454	0.61	-0.9
3,618,147	+		CCNA_03454	0.61	+0.6
3,618,155	-		CCNA_03454	0.62	+0.6
3,618,256	+		CCNA_03454	0.74	+2.2