Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03348

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.03 mg/ml
3,527,062	+		CCNA_03347	0.41	-0.4
3,527,094	+		CCNA_03347	0.43	-1.4
3,527,094	+		CCNA_03347	0.43	-0.2
3,527,099	+		CCNA_03347	0.43	+2.2
3,527,102	-		CCNA_03347	0.44	+0.1
3,527,102	-		CCNA_03347	0.44	-0.6
3,527,102	-		CCNA_03347	0.44	+0.1
3,527,116	+		CCNA_03347	0.45	-2.2
3,527,116	+		CCNA_03347	0.45	-1.0
3,527,116	+		CCNA_03347	0.45	-1.8
3,527,116	+		CCNA_03347	0.45	+0.0
3,527,116	+		CCNA_03347	0.45	-2.1
3,527,124	-		CCNA_03347	0.45	-0.6
3,527,124	-		CCNA_03347	0.45	+0.4
3,527,131	-		CCNA_03347	0.46	-0.5
3,527,131	-		CCNA_03347	0.46	-1.0
3,527,138	+		CCNA_03347	0.46	-2.6
3,527,155	+		CCNA_03347	0.47	+0.9
3,527,155	+		CCNA_03347	0.47	+0.4
3,527,165	-		CCNA_03347	0.48	-1.7
3,527,167	-		CCNA_03347	0.48	-1.5
3,527,174	-		CCNA_03347	0.49	-1.8
3,527,174	-		CCNA_03347	0.49	-0.7
3,527,182	+		CCNA_03347	0.49	-0.9
3,527,185	-		CCNA_03347	0.49	+0.7
3,527,198	+				+2.7
3,527,206	-		CCNA_03347	0.51	+0.7
3,527,213	+		CCNA_03347	0.51	+0.7
3,527,221	-		CCNA_03347	0.52	+1.5
3,527,254	-		CCNA_03347	0.54	-1.0
3,527,254	-		CCNA_03347	0.54	-0.9
3,527,254	-		CCNA_03347	0.54	+0.6
3,527,255	-		CCNA_03347	0.54	-1.9
3,527,257	+		CCNA_03347	0.54	+1.8
3,527,262	+		CCNA_03347	0.55	-0.7
3,527,265	-		CCNA_03347	0.55	-0.0
3,527,270	-		CCNA_03347	0.55	+1.0
3,527,298	+		CCNA_03347	0.57	-0.2
3,527,302	+		CCNA_03347	0.58	-0.6
3,527,302	+		CCNA_03347	0.58	-0.5
3,527,302	+		CCNA_03347	0.58	+0.3
3,527,305	-		CCNA_03347	0.58	-2.3
3,527,307	+		CCNA_03347	0.58	-1.2
3,527,315	-		CCNA_03347	0.59	-1.4
3,527,315	-		CCNA_03347	0.59	-0.5
3,527,320	-		CCNA_03347	0.59	-1.5
3,527,337	-		CCNA_03347	0.60	-2.8
3,527,395	+		CCNA_03347	0.64	-0.7
3,527,440	-		CCNA_03347	0.67	+2.1
3,527,453	+		CCNA_03347	0.68	+0.2
3,527,453	+		CCNA_03347	0.68	+0.5
3,527,453	+		CCNA_03347	0.68	-0.3
3,527,453	+		CCNA_03347	0.68	-0.3
3,527,461	-		CCNA_03347	0.69	+0.8
3,527,517	+		CCNA_03347	0.73	-0.3
3,527,517	+		CCNA_03347	0.73	+3.7
3,527,517	+		CCNA_03347	0.73	-1.8
3,527,548	+		CCNA_03347	0.75	-0.6
3,527,548	+		CCNA_03347	0.75	+1.5
3,527,548	+		CCNA_03347	0.75	-0.3
3,527,548	+		CCNA_03347	0.75	+0.2
3,527,548	+		CCNA_03347	0.75	-1.2
3,527,553	+		CCNA_03347	0.75	+1.2
3,527,556	-		CCNA_03347	0.75	-2.0
3,527,556	-		CCNA_03347	0.75	-1.4
3,527,561	-		CCNA_03347	0.76	-1.0
3,527,592	+		CCNA_03347	0.78	+3.3
3,527,600	-		CCNA_03347	0.79	-0.3
3,527,610	+		CCNA_03347	0.79	-0.3
3,527,610	+		CCNA_03347	0.79	+0.7
3,527,610	+		CCNA_03347	0.79	-0.0
3,527,618	-		CCNA_03347	0.80	+0.5
3,527,618	-		CCNA_03347	0.80	-0.1
3,527,663	+				-1.8
3,527,663	+				-0.6
3,527,671	-				+0.7
3,527,691	-				-0.6
3,527,704	-				-1.3
3,527,738	+				+0.7
3,527,738	+				+1.5
3,527,738	+				+1.1
3,527,738	+				+2.7
3,527,738	+				-2.3
3,527,746	-				-0.3
3,527,746	-				-2.7
3,527,746	-				-2.5
3,527,746	-				-1.2
3,527,746	-				-1.4
3,527,746	-				+0.9
3,527,746	-				-1.3
3,527,746	-				+2.1
3,527,746	-				+1.8
3,527,774	-				-0.6
3,527,785	+				-1.1
3,527,785	+				-0.2
3,527,785	+				+2.3
3,527,793	-				+0.7
3,527,813	-				+0.3
3,527,817	+				+0.7
3,527,825	-				-1.5
3,527,825	-				-3.0
3,527,825	-				-1.3
3,527,825	-				-0.3
3,527,874	+				+0.1
3,527,874	+				-1.6
3,527,874	+				-1.1
3,527,874	+				+0.7
3,527,879	+				-0.4
3,527,879	+				-0.3
3,527,882	-				-1.3
3,527,882	-				-0.6
3,527,884	+				-1.2
3,527,887	-				+1.7
3,527,887	-				-0.6
3,527,887	-				+1.3
3,527,887	-				+0.3
3,527,887	-				-0.4
3,527,887	-				-1.0
3,527,933	+				+0.1
3,528,010	+				+0.3
3,528,010	+				+1.7
3,528,045	+				-1.4
3,528,046	+				+0.3
3,528,093	+				-0.7
3,528,107	+				+1.9
3,528,107	+				+2.2
3,528,107	+				-0.1
3,528,156	+		CCNA_03348	0.14	-1.4
3,528,164	-		CCNA_03348	0.15	-1.2
3,528,166	+		CCNA_03348	0.15	-1.1
3,528,174	+		CCNA_03348	0.16	-0.7
3,528,174	+		CCNA_03348	0.16	+0.5
3,528,175	-		CCNA_03348	0.16	-0.3
3,528,182	-		CCNA_03348	0.16	-1.2
3,528,182	-		CCNA_03348	0.16	+1.5
3,528,192	-		CCNA_03348	0.17	+1.8
3,528,201	-		CCNA_03348	0.18	-1.2
3,528,201	-		CCNA_03348	0.18	-0.7
3,528,233	-		CCNA_03348	0.22	-2.3
3,528,258	+		CCNA_03348	0.24	+0.7
3,528,258	+		CCNA_03348	0.24	-1.9
3,528,258	+		CCNA_03348	0.24	-1.0
3,528,258	+		CCNA_03348	0.24	-0.6
3,528,258	+		CCNA_03348	0.24	+0.5
3,528,281	+		CCNA_03348	0.27	+0.5
3,528,289	-		CCNA_03348	0.28	-0.2
3,528,289	-		CCNA_03348	0.28	+0.5
3,528,294	-		CCNA_03348	0.28	-0.3
3,528,338	+		CCNA_03348	0.33	-0.8
3,528,360	+		CCNA_03348	0.35	+1.3
3,528,368	-		CCNA_03348	0.36	+1.3
3,528,377	+		CCNA_03348	0.37	-1.5
3,528,377	+		CCNA_03348	0.37	-1.0
3,528,382	+		CCNA_03348	0.37	+0.1
3,528,395	-		CCNA_03348	0.39	-2.7
3,528,406	-		CCNA_03348	0.40	-1.0
3,528,406	-		CCNA_03348	0.40	+1.3
3,528,427	-		CCNA_03348	0.42	+2.9
3,528,434	+		CCNA_03348	0.43	-0.6
3,528,439	+		CCNA_03348	0.43	-2.4
3,528,444	+		CCNA_03348	0.44	-0.5
3,528,478	+		CCNA_03348	0.47	-0.7
3,528,488	+		CCNA_03348	0.48	-0.9
3,528,488	+		CCNA_03348	0.48	+1.9
3,528,496	-		CCNA_03348	0.49	+0.8
3,528,496	-		CCNA_03348	0.49	-1.4
3,528,496	-		CCNA_03348	0.49	+0.8
3,528,500	+		CCNA_03348	0.50	-0.4
3,528,500	+		CCNA_03348	0.50	-2.1
3,528,557	+		CCNA_03348	0.56	-1.9
3,528,609	+		CCNA_03348	0.61	+0.5
3,528,652	+		CCNA_03348	0.66	+0.1
3,528,668	-		CCNA_03348	0.67	-1.7
3,528,729	-		CCNA_03348	0.74	+0.7
3,528,752	+		CCNA_03348	0.76	+0.3
3,528,752	+		CCNA_03348	0.76	-2.1
3,528,752	-		CCNA_03348	0.76	-0.4
3,528,772	-		CCNA_03348	0.78	+0.5
3,528,881	-		CCNA_03348	0.89	-2.4
3,528,905	-				+2.3
3,528,930	+				+0.2
3,528,930	+				-0.1
3,528,952	+				-2.5
3,528,975	+				-0.5
3,529,017	+		CCNA_03349	0.21	-0.2
3,529,034	+		CCNA_03349	0.30	+1.4
3,529,035	+		CCNA_03349	0.30	-0.1
3,529,035	+		CCNA_03349	0.30	+1.0
3,529,035	+		CCNA_03349	0.30	+0.5
3,529,042	-		CCNA_03349	0.34	+0.1
3,529,050	+		CCNA_03349	0.38	-1.1
3,529,137	+		CCNA_03349	0.84	+1.9
3,529,158	+				-1.6
3,529,166	-				-0.7
3,529,166	-				+0.0
3,529,181	-				-1.0
3,529,240	+		CCNA_03350	0.13	-0.9
3,529,248	-		CCNA_03350	0.17	-1.0
3,529,250	-		CCNA_03350	0.18	-0.5
3,529,252	+		CCNA_03350	0.19	+0.3
3,529,324	-		CCNA_03350	0.55	-0.4
3,529,378	-		CCNA_03350	0.82	-0.6
3,529,423	-				+0.2
3,529,448	-				-0.4
3,529,457	+				-1.4
3,529,465	-				-0.2
3,529,476	-				+0.0
3,529,488	+				-1.7
3,529,494	-				-0.1
3,529,501	-				-1.4
3,529,519	+		CCNA_03351	0.10	-0.2
3,529,523	+		CCNA_03351	0.11	+0.6
3,529,532	-		CCNA_03351	0.12	-0.6
3,529,533	+		CCNA_03351	0.12	-0.3
3,529,533	+		CCNA_03351	0.12	-0.1
3,529,533	+		CCNA_03351	0.12	-0.1
3,529,541	-		CCNA_03351	0.13	-1.3
3,529,587	+		CCNA_03351	0.18	-0.5
3,529,587	+		CCNA_03351	0.18	-0.9
3,529,605	+		CCNA_03351	0.19	+0.2
3,529,613	-		CCNA_03351	0.20	+0.5
3,529,642	-		CCNA_03351	0.23	-1.2
3,529,654	-		CCNA_03351	0.25	+0.8
3,529,667	-		CCNA_03351	0.26	-1.5
3,529,673	+		CCNA_03351	0.26	-1.6
3,529,681	-		CCNA_03351	0.27	+0.3
3,529,697	+		CCNA_03351	0.29	-1.6
3,529,705	-		CCNA_03351	0.30	+0.6
3,529,739	+		CCNA_03351	0.33	-1.3
3,529,740	+		CCNA_03351	0.33	-1.5
3,529,747	-		CCNA_03351	0.34	+0.7
3,529,748	-		CCNA_03351	0.34	-2.2
3,529,750	+		CCNA_03351	0.34	+0.5
3,529,777	+		CCNA_03351	0.37	+0.7
3,529,781	-		CCNA_03351	0.38	+2.3
3,529,792	+		CCNA_03351	0.39	-2.4
3,529,797	+		CCNA_03351	0.39	-1.0
3,529,805	-		CCNA_03351	0.40	+1.5
3,529,805	-		CCNA_03351	0.40	+0.7
3,529,805	-		CCNA_03351	0.40	-0.0
3,529,822	+		CCNA_03351	0.42	-1.2
3,529,830	-		CCNA_03351	0.43	+1.5
3,529,830	-		CCNA_03351	0.43	+0.7
3,529,831	-		CCNA_03351	0.43	-0.1
3,529,836	+		CCNA_03351	0.43	-0.2
3,529,836	+		CCNA_03351	0.43	-0.3
3,529,841	+		CCNA_03351	0.44	-1.8
3,529,844	-		CCNA_03351	0.44	-0.1
3,529,844	-		CCNA_03351	0.44	+1.7
3,529,844	-		CCNA_03351	0.44	+0.6
3,529,844	-		CCNA_03351	0.44	+0.5
3,529,844	-		CCNA_03351	0.44	-0.7
3,529,844	-		CCNA_03351	0.44	+0.4
3,529,846	+		CCNA_03351	0.44	-0.7
3,529,863	-		CCNA_03351	0.46	-0.4
3,529,868	-		CCNA_03351	0.47	-0.3
3,529,871	+		CCNA_03351	0.47	-1.8
3,529,883	+		CCNA_03351	0.48	+0.6
3,529,885	-		CCNA_03351	0.48	+0.2
3,529,896	-		CCNA_03351	0.50	-0.9
3,529,942	-		CCNA_03351	0.54	-0.4
3,529,950	+		CCNA_03351	0.55	-0.3
3,529,958	-		CCNA_03351	0.56	-1.4