Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03224

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.03 mg/ml
3,385,741	+		CCNA_03222	0.86	-0.2
3,385,741	+		CCNA_03222	0.86	-0.1
3,385,741	+		CCNA_03222	0.86	+1.8
3,385,741	+		CCNA_03222	0.86	+1.2
3,385,746	+		CCNA_03222	0.86	-0.9
3,385,749	-		CCNA_03222	0.87	-0.2
3,385,771	-		CCNA_03222	0.88	-1.2
3,385,791	-				-0.2
3,385,843	-				-2.2
3,385,845	+				-0.3
3,385,845	+				-1.7
3,385,845	+				+0.2
3,385,913	+				+2.3
3,385,939	+				+0.9
3,385,945	-				-1.5
3,386,019	-				-0.6
3,386,024	-				+1.2
3,386,024	-				-1.8
3,386,070	+				+1.4
3,386,070	+				-0.6
3,386,078	-				-2.8
3,386,093	-				+1.7
3,386,093	-				+0.4
3,386,128	-		CCNA_03223	0.13	+0.2
3,386,129	-		CCNA_03223	0.13	-0.5
3,386,144	-		CCNA_03223	0.16	+0.1
3,386,153	-		CCNA_03223	0.17	-0.4
3,386,166	+		CCNA_03223	0.19	+2.0
3,386,166	+		CCNA_03223	0.19	+2.2
3,386,174	-		CCNA_03223	0.21	+0.4
3,386,178	-		CCNA_03223	0.21	-0.9
3,386,181	+		CCNA_03223	0.22	+1.2
3,386,228	-		CCNA_03223	0.29	+0.6
3,386,233	-		CCNA_03223	0.30	+0.4
3,386,323	+		CCNA_03223	0.45	+1.6
3,386,353	+		CCNA_03223	0.50	+2.3
3,386,426	+		CCNA_03223	0.62	+2.2
3,386,426	+		CCNA_03223	0.62	+1.7
3,386,431	+		CCNA_03223	0.63	+1.8
3,386,431	+		CCNA_03223	0.63	+1.6
3,386,431	+		CCNA_03223	0.63	+2.4
3,386,431	+		CCNA_03223	0.63	+1.5
3,386,431	+		CCNA_03223	0.63	+0.4
3,386,431	+		CCNA_03223	0.63	+2.1
3,386,431	+		CCNA_03223	0.63	+1.1
3,386,431	+		CCNA_03223	0.63	+1.4
3,386,431	+		CCNA_03223	0.63	+0.9
3,386,434	-		CCNA_03223	0.63	+0.3
3,386,434	-		CCNA_03223	0.63	+0.2
3,386,434	-		CCNA_03223	0.63	-1.1
3,386,434	-		CCNA_03223	0.63	-0.6
3,386,434	-		CCNA_03223	0.63	+1.3
3,386,439	-		CCNA_03223	0.64	-0.5
3,386,439	-		CCNA_03223	0.64	+2.3
3,386,439	-		CCNA_03223	0.64	+0.4
3,386,453	+		CCNA_03223	0.66	+1.9
3,386,489	+		CCNA_03223	0.72	+2.0
3,386,497	-		CCNA_03223	0.74	-0.2
3,386,545	+		CCNA_03223	0.81	-0.4
3,386,547	-		CCNA_03223	0.82	-0.9
3,386,570	-		CCNA_03223	0.86	+0.2
3,386,572	+		CCNA_03223	0.86	+1.0
3,386,572	+		CCNA_03223	0.86	+1.8
3,386,580	-		CCNA_03223	0.87	+1.7
3,386,580	-		CCNA_03223	0.87	+0.7
3,386,605	+				+0.3
3,386,684	+				+2.2
3,386,706	-				+1.3
3,386,716	-				+0.3
3,386,786	-		CCNA_03224	0.29	-2.2
3,386,828	+		CCNA_03224	0.46	+0.4
3,386,882	-		CCNA_03224	0.69	+0.2
3,386,911	-		CCNA_03224	0.81	-0.6
3,386,974	+				+1.3
3,387,047	-				+0.6
3,387,083	+				-0.5
3,387,089	-				+1.8
3,387,103	+				-2.3
3,387,126	-				-1.9
3,387,131	-				-1.2
3,387,136	-				+0.5
3,387,165	+				-0.2
3,387,173	-				-0.9
3,387,211	+		CCNA_03225	0.10	+2.2
3,387,211	+		CCNA_03225	0.10	-1.2
3,387,219	-		CCNA_03225	0.11	-1.2
3,387,261	+		CCNA_03225	0.14	+1.9
3,387,280	-		CCNA_03225	0.16	-2.3
3,387,315	-		CCNA_03225	0.19	+1.1
3,387,349	+		CCNA_03225	0.21	-1.3
3,387,369	-		CCNA_03225	0.23	-2.1
3,387,383	-		CCNA_03225	0.24	-0.6
3,387,433	+		CCNA_03225	0.28	-1.7
3,387,502	+		CCNA_03225	0.33	+0.6
3,387,502	+		CCNA_03225	0.33	-1.5
3,387,502	+		CCNA_03225	0.33	-0.4
3,387,510	-		CCNA_03225	0.34	-0.6
3,387,510	-		CCNA_03225	0.34	-0.1
3,387,516	-		CCNA_03225	0.34	-0.9
3,387,516	-		CCNA_03225	0.34	+0.7
3,387,521	-		CCNA_03225	0.34	-0.4
3,387,521	-		CCNA_03225	0.34	+0.7
3,387,521	-		CCNA_03225	0.34	+0.0
3,387,568	-		CCNA_03225	0.38	-1.9
3,387,601	-		CCNA_03225	0.41	+1.2
3,387,689	-		CCNA_03225	0.47	-1.4
3,387,691	+		CCNA_03225	0.48	-1.9
3,387,694	-		CCNA_03225	0.48	-1.2
3,387,706	+		CCNA_03225	0.49	-3.3
3,387,756	-		CCNA_03225	0.53	+0.5
3,387,782	+		CCNA_03225	0.55	+1.7
3,387,841	-		CCNA_03225	0.59	+1.4
3,387,862	+		CCNA_03225	0.61	-1.8
3,387,947	-		CCNA_03225	0.67	-0.1
3,387,947	-		CCNA_03225	0.67	-0.8