Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03049

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.03 mg/ml
3,202,037	+		CCNA_03048	0.41	-1.6
3,202,045	-		CCNA_03048	0.42	+1.9
3,202,045	-		CCNA_03048	0.42	+1.1
3,202,055	-		CCNA_03048	0.42	-1.4
3,202,055	-		CCNA_03048	0.42	-1.4
3,202,089	+		CCNA_03048	0.44	+0.3
3,202,097	-		CCNA_03048	0.45	-0.2
3,202,115	+		CCNA_03048	0.46	-2.7
3,202,123	-		CCNA_03048	0.46	-1.6
3,202,231	-		CCNA_03048	0.53	-0.3
3,202,237	+		CCNA_03048	0.54	-1.1
3,202,266	+		CCNA_03048	0.56	-1.2
3,202,271	+		CCNA_03048	0.56	-0.2
3,202,279	-		CCNA_03048	0.56	-1.4
3,202,290	-		CCNA_03048	0.57	+0.2
3,202,310	+		CCNA_03048	0.58	-1.2
3,202,310	+		CCNA_03048	0.58	-1.8
3,202,310	+		CCNA_03048	0.58	+0.3
3,202,339	+		CCNA_03048	0.60	-1.3
3,202,341	+		CCNA_03048	0.60	+0.4
3,202,364	-		CCNA_03048	0.62	+1.5
3,202,379	-		CCNA_03048	0.63	-0.1
3,202,390	+		CCNA_03048	0.63	-0.2
3,202,390	+		CCNA_03048	0.63	+0.4
3,202,390	+		CCNA_03048	0.63	+1.4
3,202,390	+		CCNA_03048	0.63	-0.7
3,202,390	+		CCNA_03048	0.63	-0.6
3,202,390	+		CCNA_03048	0.63	-0.7
3,202,398	-		CCNA_03048	0.64	+0.8
3,202,398	-		CCNA_03048	0.64	-0.7
3,202,398	-		CCNA_03048	0.64	+0.9
3,202,398	-		CCNA_03048	0.64	-1.9
3,202,398	-		CCNA_03048	0.64	+1.4
3,202,398	-		CCNA_03048	0.64	+1.2
3,202,399	+		CCNA_03048	0.64	+2.1
3,202,403	-				+0.9
3,202,444	-		CCNA_03048	0.67	-1.8
3,202,446	+		CCNA_03048	0.67	+0.9
3,202,446	+		CCNA_03048	0.67	+0.3
3,202,446	+		CCNA_03048	0.67	+1.1
3,202,446	+		CCNA_03048	0.67	-0.7
3,202,446	+		CCNA_03048	0.67	-0.4
3,202,446	+		CCNA_03048	0.67	-1.4
3,202,446	+		CCNA_03048	0.67	-1.8
3,202,446	+		CCNA_03048	0.67	+0.6
3,202,446	+		CCNA_03048	0.67	-0.4
3,202,446	+		CCNA_03048	0.67	-2.1
3,202,446	+		CCNA_03048	0.67	-0.1
3,202,454	-		CCNA_03048	0.67	-1.4
3,202,454	-		CCNA_03048	0.67	-0.4
3,202,454	-		CCNA_03048	0.67	+1.0
3,202,454	-		CCNA_03048	0.67	-0.2
3,202,454	-		CCNA_03048	0.67	+0.5
3,202,454	-		CCNA_03048	0.67	-0.2
3,202,454	-		CCNA_03048	0.67	-0.2
3,202,454	-		CCNA_03048	0.67	-0.8
3,202,454	-		CCNA_03048	0.67	+0.8
3,202,454	-		CCNA_03048	0.67	+1.6
3,202,456	+		CCNA_03048	0.68	+0.7
3,202,514	+		CCNA_03048	0.71	+0.0
3,202,517	-		CCNA_03048	0.71	+0.6
3,202,578	-		CCNA_03048	0.75	+2.0
3,202,639	+		CCNA_03048	0.79	+0.8
3,202,639	+		CCNA_03048	0.79	+0.4
3,202,639	+		CCNA_03048	0.79	-1.3
3,202,639	+		CCNA_03048	0.79	-0.2
3,202,647	-		CCNA_03048	0.80	-0.7
3,202,647	-		CCNA_03048	0.80	-0.8
3,202,647	-		CCNA_03048	0.80	+0.2
3,202,652	+		CCNA_03048	0.80	-0.4
3,202,669	+		CCNA_03048	0.81	-2.5
3,202,670	+		CCNA_03048	0.81	+0.8
3,202,677	-		CCNA_03048	0.82	+0.4
3,202,694	+		CCNA_03048	0.83	+0.0
3,202,694	+		CCNA_03048	0.83	+1.7
3,202,694	+		CCNA_03048	0.83	+1.6
3,202,694	+		CCNA_03048	0.83	+0.9
3,202,696	+		CCNA_03048	0.83	+0.1
3,202,701	+		CCNA_03048	0.83	+1.3
3,202,702	-		CCNA_03048	0.83	-0.0
3,202,702	-		CCNA_03048	0.83	+1.8
3,202,750	+		CCNA_03048	0.86	-0.3
3,202,755	+		CCNA_03048	0.87	+0.6
3,202,774	+		CCNA_03048	0.88	-1.0
3,202,774	+		CCNA_03048	0.88	+0.1
3,202,774	+		CCNA_03048	0.88	-1.0
3,202,774	+		CCNA_03048	0.88	-1.2
3,202,782	-		CCNA_03048	0.88	-0.3
3,202,782	-		CCNA_03048	0.88	-1.3
3,202,782	-		CCNA_03048	0.88	+0.6
3,202,802	+		CCNA_03048	0.90	-1.1
3,202,810	+				-1.4
3,202,840	-				-2.3
3,202,848	+				-0.1
3,202,872	-				-1.4
3,202,882	-				+1.5
3,202,897	-				-0.6
3,202,908	+				-2.2
3,202,908	+				-2.8
3,202,911	-				-0.9
3,202,916	-				-3.6
3,202,916	-				-0.2
3,202,942	+				-0.1
3,202,950	-				-0.3
3,202,962	-				+0.2
3,202,980	-				-2.0
3,203,002	+				+3.7
3,203,044	+				+1.7
3,203,044	+				+0.3
3,203,044	+				-0.1
3,203,141	+				+0.4
3,203,175	-		CCNA_03049	0.11	+2.7
3,203,186	+		CCNA_03049	0.11	-1.1
3,203,216	+		CCNA_03049	0.13	+0.1
3,203,234	-		CCNA_03049	0.15	+0.3
3,203,289	+		CCNA_03049	0.18	-0.6
3,203,290	-		CCNA_03049	0.18	-0.2
3,203,290	-		CCNA_03049	0.18	-1.1
3,203,301	-		CCNA_03049	0.19	+0.1
3,203,302	+		CCNA_03049	0.19	-1.0
3,203,302	+		CCNA_03049	0.19	+0.1
3,203,321	+		CCNA_03049	0.21	+0.4
3,203,356	-		CCNA_03049	0.23	+0.5
3,203,389	+		CCNA_03049	0.25	-0.4
3,203,396	-		CCNA_03049	0.26	-1.5
3,203,431	+		CCNA_03049	0.28	-0.8
3,203,440	-		CCNA_03049	0.29	+0.7
3,203,446	-				+1.4
3,203,532	-		CCNA_03049	0.35	-0.4
3,203,586	+		CCNA_03049	0.39	+0.6
3,203,629	+		CCNA_03049	0.42	+0.4
3,203,665	-		CCNA_03049	0.44	+1.3
3,203,666	+		CCNA_03049	0.44	-0.3
3,203,695	-		CCNA_03049	0.46	-0.5
3,203,726	-		CCNA_03049	0.48	-0.1
3,203,812	-		CCNA_03049	0.54	+0.6
3,203,814	+		CCNA_03049	0.54	+0.6
3,203,824	-		CCNA_03049	0.55	-0.3
3,203,835	-		CCNA_03049	0.56	-0.7
3,203,846	-		CCNA_03049	0.56	-1.7
3,203,918	-		CCNA_03049	0.61	-1.2
3,203,928	-		CCNA_03049	0.62	-2.1
3,203,940	-		CCNA_03049	0.63	-0.6
3,203,949	+		CCNA_03049	0.63	-0.2
3,203,949	+		CCNA_03049	0.63	-2.0
3,203,957	-		CCNA_03049	0.64	+0.4
3,203,957	-		CCNA_03049	0.64	-1.6
3,203,957	-		CCNA_03049	0.64	-0.3
3,203,957	-		CCNA_03049	0.64	-1.9
3,203,970	+		CCNA_03049	0.65	+0.3
3,203,970	+		CCNA_03049	0.65	-0.8
3,203,971	-				+3.3
3,203,978	-		CCNA_03049	0.65	-1.9
3,203,981	+		CCNA_03049	0.66	-1.0
3,204,002	-		CCNA_03049	0.67	-0.8
3,204,009	+		CCNA_03049	0.67	-0.4
3,204,009	-		CCNA_03049	0.67	-0.9
3,204,014	-		CCNA_03049	0.68	-0.4
3,204,027	+		CCNA_03049	0.69	-0.2
3,204,027	+		CCNA_03049	0.69	-0.5
3,204,027	+		CCNA_03049	0.69	+0.6
3,204,027	+		CCNA_03049	0.69	+0.3
3,204,035	-		CCNA_03049	0.69	-0.8
3,204,035	-		CCNA_03049	0.69	-2.4
3,204,035	-		CCNA_03049	0.69	-0.2
3,204,094	+		CCNA_03049	0.73	+0.4
3,204,100	-		CCNA_03049	0.74	+1.1
3,204,104	+		CCNA_03049	0.74	-2.0
3,204,134	+		CCNA_03049	0.76	-0.8
3,204,143	-		CCNA_03049	0.77	-0.9
3,204,160	+		CCNA_03049	0.78	+0.7
3,204,215	+		CCNA_03049	0.82	+0.2
3,204,223	-		CCNA_03049	0.82	-2.2
3,204,253	+		CCNA_03049	0.84	-1.5
3,204,323	+		CCNA_03049	0.89	+0.0
3,204,331	-		CCNA_03049	0.89	-1.5
3,204,342	-				+0.4
3,204,352	+				-0.5
3,204,352	+				-0.4
3,204,357	+				-0.1
3,204,360	-				-2.1
3,204,367	+				-1.2
3,204,367	+				+1.9
3,204,367	+				-1.2
3,204,367	+				-0.8
3,204,416	+				-1.7
3,204,435	+				-1.1
3,204,443	-				-1.0
3,204,480	-				+0.3
3,204,487	-				+0.4
3,204,561	+				-0.4
3,204,566	+				-0.6
3,204,569	-				-0.6
3,204,569	-				+5.3
3,204,584	-				-3.0
3,204,586	+				-0.1
3,204,602	+				-0.3
3,204,602	+				-1.9
3,204,602	+				-0.1
3,204,602	+				-0.3
3,204,602	+				+1.2
3,204,602	+				-1.2
3,204,603	-				-0.2
3,204,610	-				+0.2
3,204,610	-				-0.5
3,204,610	-				+0.3
3,204,610	-				-0.7
3,204,610	-				+0.4
3,204,610	-				+1.5
3,204,610	-				+0.8
3,204,610	-				+0.4
3,204,619	+				+1.6
3,204,627	-				+0.9
3,204,663	+				-0.7
3,204,688	-				+2.4
3,204,788	+		CCNA_03050	0.22	+0.0
3,204,803	+		CCNA_03050	0.24	+2.2
3,204,839	+		CCNA_03050	0.28	-0.3
3,204,839	+		CCNA_03050	0.28	+0.3
3,204,839	+		CCNA_03050	0.28	-2.4
3,204,878	-		CCNA_03050	0.33	-0.5
3,204,942	+		CCNA_03050	0.41	-2.0
3,204,963	+		CCNA_03050	0.44	-0.7
3,204,968	+		CCNA_03050	0.45	+0.9
3,204,971	-		CCNA_03050	0.45	-1.5
3,204,981	-		CCNA_03050	0.47	-1.8
3,204,990	-		CCNA_03050	0.48	-0.5
3,205,006	+		CCNA_03050	0.50	-0.4
3,205,030	+		CCNA_03050	0.53	+1.2
3,205,061	-		CCNA_03050	0.57	-2.5
3,205,061	-		CCNA_03050	0.57	-1.2
3,205,076	-		CCNA_03050	0.59	+0.2
3,205,076	-		CCNA_03050	0.59	+0.8
3,205,091	+		CCNA_03050	0.61	-0.3
3,205,109	+		CCNA_03050	0.63	-0.5
3,205,113	+		CCNA_03050	0.64	-0.3
3,205,213	-		CCNA_03050	0.76	-0.2
3,205,213	-		CCNA_03050	0.76	-1.0
3,205,234	+		CCNA_03050	0.79	+0.0
3,205,256	-		CCNA_03050	0.82	-0.2
3,205,263	+		CCNA_03050	0.83	+0.7
3,205,271	-		CCNA_03050	0.84	-1.8
3,205,277	+		CCNA_03050	0.85	-0.3
3,205,299	+		CCNA_03050	0.88	-0.2
3,205,379	+				-0.2
3,205,379	+				-1.6
3,205,390	+				-0.6
3,205,397	-				-2.2
3,205,397	-				-0.3
3,205,397	-				+0.7
3,205,483	+				-0.0
3,205,483	+				-0.2
3,205,483	+				+0.4
3,205,483	+				-0.3
3,205,483	+				-0.3
3,205,483	+				-0.2