Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02576

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.03 mg/ml
2,726,932	-		CCNA_02574	0.61	-0.2
2,726,969	+		CCNA_02574	0.68	+0.0
2,726,969	+		CCNA_02574	0.68	-0.6
2,726,969	+		CCNA_02574	0.68	-0.8
2,726,970	-		CCNA_02574	0.68	-1.6
2,726,970	-		CCNA_02574	0.68	+0.1
2,726,977	-		CCNA_02574	0.69	+1.1
2,726,977	-		CCNA_02574	0.69	+0.5
2,726,982	+		CCNA_02574	0.70	+0.2
2,726,984	+		CCNA_02574	0.70	+1.1
2,726,985	-		CCNA_02574	0.70	-0.2
2,727,000	-		CCNA_02574	0.73	-0.5
2,727,061	+		CCNA_02574	0.84	+2.0
2,727,071	+		CCNA_02574	0.85	+0.0
2,727,097	-		CCNA_02574	0.90	-1.4
2,727,194	+				-1.6
2,727,197	-				+2.4
2,727,197	-				+1.8
2,727,197	-				+2.3
2,727,202	-				+2.1
2,727,224	+				+0.1
2,727,224	+				+0.4
2,727,224	+				+2.3
2,727,227	-				+1.4
2,727,232	-				+2.5
2,727,232	-				+2.6
2,727,232	-				+2.9
2,727,232	-				+2.0
2,727,232	-				+1.8
2,727,232	-				+2.3
2,727,249	-		CCNA_02575	0.10	+3.8
2,727,282	-		CCNA_02575	0.21	+2.7
2,727,305	+		CCNA_02575	0.28	+2.6
2,727,315	-		CCNA_02575	0.31	+2.6
2,727,316	+		CCNA_02575	0.31	-0.1
2,727,324	-		CCNA_02575	0.34	+2.3
2,727,344	+		CCNA_02575	0.40	-0.7
2,727,400	+		CCNA_02575	0.58	-2.3
2,727,408	-		CCNA_02575	0.61	+1.7
2,727,473	+		CCNA_02575	0.81	-0.9
2,727,513	-				+2.0
2,727,655	-				+2.3
2,727,667	+				+0.0
2,727,729	+				-1.8
2,727,756	-				-1.0
2,727,808	+				+2.7
2,727,808	+				+1.9
2,727,808	+				+1.1
2,727,815	+				+3.6
2,727,832	+				+2.2
2,727,832	+				+2.4
2,727,868	+				+1.0
2,727,868	+				-1.8
2,727,873	+				-0.8
2,727,953	+				+2.9
2,727,953	+				+2.2
2,727,973	+				+3.1
2,727,982	+				+2.1
2,728,020	+		CCNA_02576	0.13	+2.0
2,728,034	+		CCNA_02576	0.15	+2.4
2,728,042	-		CCNA_02576	0.16	-0.5
2,728,042	-		CCNA_02576	0.16	+1.5
2,728,047	+		CCNA_02576	0.17	+2.5
2,728,088	+		CCNA_02576	0.22	+2.9
2,728,088	+		CCNA_02576	0.22	+2.6
2,728,088	+		CCNA_02576	0.22	+2.6
2,728,088	+		CCNA_02576	0.22	+1.9
2,728,096	-		CCNA_02576	0.23	+1.2
2,728,160	+		CCNA_02576	0.32	+2.6
2,728,160	+		CCNA_02576	0.32	+1.8
2,728,168	-		CCNA_02576	0.33	+2.3
2,728,170	+		CCNA_02576	0.33	+3.2
2,728,197	+		CCNA_02576	0.37	+2.9
2,728,210	+				+3.8
2,728,215	+		CCNA_02576	0.39	+1.4
2,728,215	+		CCNA_02576	0.39	+1.8
2,728,236	+		CCNA_02576	0.42	+2.4
2,728,249	-		CCNA_02576	0.44	-0.1
2,728,271	+		CCNA_02576	0.47	+3.6
2,728,277	-		CCNA_02576	0.47	-0.3
2,728,298	+		CCNA_02576	0.50	+2.8
2,728,327	+		CCNA_02576	0.54	+2.7
2,728,340	+		CCNA_02576	0.56	+2.8
2,728,359	-		CCNA_02576	0.58	-0.1
2,728,376	+		CCNA_02576	0.60	+3.3
2,728,429	+		CCNA_02576	0.67	+2.9
2,728,437	-		CCNA_02576	0.68	-0.1
2,728,451	+		CCNA_02576	0.70	+3.0
2,728,453	-		CCNA_02576	0.70	-0.8
2,728,453	-		CCNA_02576	0.70	-0.7
2,728,465	-		CCNA_02576	0.72	+1.0
2,728,489	+		CCNA_02576	0.75	+2.8
2,728,503	+		CCNA_02576	0.77	+3.3
2,728,512	+		CCNA_02576	0.78	+3.3
2,728,549	+		CCNA_02576	0.83	+2.8
2,728,560	+		CCNA_02576	0.85	+3.4
2,728,584	-				+2.9
2,728,586	+		CCNA_02576	0.88	+3.3
2,728,614	-				+2.2
2,728,673	+				+2.9
2,728,772	+		CCNA_02577	0.19	+0.6
2,728,772	+		CCNA_02577	0.19	+0.4
2,728,822	+		CCNA_02577	0.40	+1.5
2,728,823	-		CCNA_02577	0.40	+0.5
2,728,830	-		CCNA_02577	0.43	-1.0
2,728,897	+		CCNA_02577	0.71	-1.4
2,728,905	-		CCNA_02577	0.74	+0.7
2,728,905	-		CCNA_02577	0.74	+1.9
2,728,905	-		CCNA_02577	0.74	+0.1
2,728,942	-		CCNA_02577	0.90	-0.0
2,728,989	+				+2.9
2,728,996	+				+1.9
2,729,029	-				-0.4
2,729,035	+				+1.8
2,729,044	+				+0.3
2,729,067	-				-0.6
2,729,077	+				+1.3
2,729,085	-				-1.3
2,729,085	-				+1.1
2,729,092	+				+1.2
2,729,110	-				-0.0
2,729,128	+				+1.0
2,729,163	+				-0.2
2,729,171	-				+1.3
2,729,185	+				+1.6
2,729,192	-				-1.3
2,729,195	+				-0.4
2,729,203	-				+1.8
2,729,250	+				+2.4
2,729,368	+		CCNA_02578	0.26	-1.4
2,729,370	+		CCNA_02578	0.27	+0.9
2,729,376	+		CCNA_02578	0.28	+2.4
2,729,384	-		CCNA_02578	0.29	+0.9
2,729,416	+		CCNA_02578	0.34	-0.9
2,729,421	+		CCNA_02578	0.35	-0.5
2,729,429	-		CCNA_02578	0.36	-1.2
2,729,434	-		CCNA_02578	0.37	+1.6
2,729,438	+		CCNA_02578	0.37	+1.1
2,729,438	+		CCNA_02578	0.37	-1.6
2,729,444	-		CCNA_02578	0.38	+0.3
2,729,446	-		CCNA_02578	0.38	+0.7
2,729,455	+		CCNA_02578	0.40	-0.1
2,729,455	+		CCNA_02578	0.40	-0.2
2,729,463	-		CCNA_02578	0.41	+2.5
2,729,463	-		CCNA_02578	0.41	+1.2
2,729,463	-		CCNA_02578	0.41	+0.6
2,729,463	-		CCNA_02578	0.41	+0.8
2,729,507	-		CCNA_02578	0.48	+1.1
2,729,516	-		CCNA_02578	0.49	-0.4
2,729,528	+		CCNA_02578	0.51	-1.2
2,729,528	+		CCNA_02578	0.51	-0.7
2,729,528	+		CCNA_02578	0.51	-1.7
2,729,528	+		CCNA_02578	0.51	+0.3
2,729,576	-		CCNA_02578	0.59	+0.5
2,729,630	+		CCNA_02578	0.67	-1.0
2,729,639	-		CCNA_02578	0.68	-1.0
2,729,653	+		CCNA_02578	0.71	-0.3
2,729,653	+		CCNA_02578	0.71	+0.0
2,729,658	+		CCNA_02578	0.71	+0.4
2,729,661	-				+2.8
2,729,661	-		CCNA_02578	0.72	-0.1