Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01590

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01589 and CCNA_01590 are separated by 132 nucleotidesCCNA_01590 and CCNA_01591 overlap by 25 nucleotidesCCNA_01591 and CCNA_01592 are separated by 115 nucleotides CCNA_01589: CCNA_01589 - acyltransferase 3, at 1,708,112 to 1,709,248 _01589 CCNA_01590: CCNA_01590 - NAD-dependent DNA ligase, at 1,709,381 to 1,711,732 _01590 CCNA_01591: CCNA_01591 - DNA polymerase III epsilon-like protein, at 1,711,708 to 1,712,337 _01591 CCNA_01592: CCNA_01592 - SN-glycerol-3-phosphate transport ATP-binding protein, at 1,712,453 to 1,712,881 _01592 Position (kb) 1709 1710 1711 1712Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1708.402 kb on + strand, within CCNA_01589at 1708.410 kb on - strand, within CCNA_01589at 1708.441 kb on - strand, within CCNA_01589at 1708.447 kb on + strand, within CCNA_01589at 1708.463 kb on + strand, within CCNA_01589at 1708.466 kb on + strand, within CCNA_01589at 1708.514 kb on + strand, within CCNA_01589at 1708.522 kb on - strand, within CCNA_01589at 1708.522 kb on - strand, within CCNA_01589at 1708.522 kb on - strand, within CCNA_01589at 1708.522 kb on - strand, within CCNA_01589at 1708.557 kb on - strand, within CCNA_01589at 1708.595 kb on + strand, within CCNA_01589at 1708.595 kb on + strand, within CCNA_01589at 1708.600 kb on + strand, within CCNA_01589at 1708.600 kb on + strand, within CCNA_01589at 1708.600 kb on + strand, within CCNA_01589at 1708.603 kb on - strand, within CCNA_01589at 1708.603 kb on - strand, within CCNA_01589at 1708.608 kb on - strand, within CCNA_01589at 1708.618 kb on + strand, within CCNA_01589at 1708.657 kb on + strand, within CCNA_01589at 1708.665 kb on - strand, within CCNA_01589at 1708.737 kb on + strand, within CCNA_01589at 1708.745 kb on - strandat 1708.745 kb on - strand, within CCNA_01589at 1708.745 kb on - strand, within CCNA_01589at 1708.747 kb on + strand, within CCNA_01589at 1708.790 kb on + strand, within CCNA_01589at 1708.810 kb on + strand, within CCNA_01589at 1708.815 kb on + strand, within CCNA_01589at 1708.815 kb on + strand, within CCNA_01589at 1708.815 kb on + strand, within CCNA_01589at 1708.815 kb on + strand, within CCNA_01589at 1708.823 kb on - strand, within CCNA_01589at 1708.823 kb on - strand, within CCNA_01589at 1708.823 kb on - strand, within CCNA_01589at 1708.823 kb on - strand, within CCNA_01589at 1708.823 kb on - strandat 1708.823 kb on - strand, within CCNA_01589at 1708.828 kb on - strand, within CCNA_01589at 1708.833 kb on - strand, within CCNA_01589at 1708.835 kb on + strand, within CCNA_01589at 1708.865 kb on - strand, within CCNA_01589at 1708.889 kb on + strand, within CCNA_01589at 1708.890 kb on - strand, within CCNA_01589at 1708.935 kb on - strand, within CCNA_01589at 1708.935 kb on - strand, within CCNA_01589at 1708.958 kb on - strand, within CCNA_01589at 1708.991 kb on - strand, within CCNA_01589at 1708.996 kb on - strand, within CCNA_01589at 1709.019 kb on + strand, within CCNA_01589at 1709.019 kb on + strand, within CCNA_01589at 1709.019 kb on + strand, within CCNA_01589at 1709.019 kb on + strand, within CCNA_01589at 1709.019 kb on + strand, within CCNA_01589at 1709.027 kb on - strand, within CCNA_01589at 1709.027 kb on - strand, within CCNA_01589at 1709.027 kb on - strand, within CCNA_01589at 1709.035 kb on + strand, within CCNA_01589at 1709.036 kb on + strand, within CCNA_01589at 1709.038 kb on - strand, within CCNA_01589at 1709.043 kb on - strand, within CCNA_01589at 1709.044 kb on - strand, within CCNA_01589at 1709.050 kb on - strand, within CCNA_01589at 1709.100 kb on + strand, within CCNA_01589at 1709.190 kb on + strandat 1709.190 kb on + strandat 1709.190 kb on + strandat 1709.195 kb on + strandat 1709.200 kb on + strandat 1709.224 kb on - strandat 1709.258 kb on - strandat 1709.280 kb on - strandat 1709.330 kb on - strandat 1709.340 kb on + strandat 1709.348 kb on - strandat 1709.371 kb on + strandat 1711.760 kb on + strandat 1711.793 kb on + strand, within CCNA_01591at 1711.800 kb on - strand, within CCNA_01591at 1711.805 kb on - strand, within CCNA_01591at 1711.836 kb on + strand, within CCNA_01591at 1711.838 kb on + strand, within CCNA_01591at 1711.870 kb on + strand, within CCNA_01591at 1711.872 kb on + strand, within CCNA_01591at 1711.936 kb on - strand, within CCNA_01591at 1711.947 kb on + strand, within CCNA_01591at 1711.947 kb on + strand, within CCNA_01591at 1711.952 kb on + strand, within CCNA_01591at 1711.965 kb on - strand, within CCNA_01591at 1711.967 kb on - strand, within CCNA_01591at 1711.974 kb on + strand, within CCNA_01591at 1711.974 kb on + strand, within CCNA_01591at 1712.088 kb on + strand, within CCNA_01591at 1712.114 kb on + strand, within CCNA_01591at 1712.176 kb on + strand, within CCNA_01591at 1712.184 kb on - strand, within CCNA_01591at 1712.297 kb on - strandat 1712.331 kb on + strandat 1712.422 kb on - strandat 1712.422 kb on - strandat 1712.463 kb on - strandat 1712.547 kb on - strand, within CCNA_01592at 1712.569 kb on + strand, within CCNA_01592at 1712.570 kb on + strand, within CCNA_01592at 1712.611 kb on + strand, within CCNA_01592at 1712.619 kb on - strand, within CCNA_01592at 1712.624 kb on - strand, within CCNA_01592at 1712.624 kb on - strand, within CCNA_01592at 1712.626 kb on + strand, within CCNA_01592at 1712.626 kb on + strand, within CCNA_01592at 1712.626 kb on + strand, within CCNA_01592at 1712.631 kb on + strand, within CCNA_01592at 1712.634 kb on - strand, within CCNA_01592at 1712.634 kb on - strand, within CCNA_01592at 1712.653 kb on + strand, within CCNA_01592at 1712.682 kb on + strand, within CCNA_01592at 1712.708 kb on + strand, within CCNA_01592

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml
remove
1,708,402 + CCNA_01589 0.26 +1.6
1,708,410 - CCNA_01589 0.26 -0.6
1,708,441 - CCNA_01589 0.29 -2.0
1,708,447 + CCNA_01589 0.29 +1.4
1,708,463 + CCNA_01589 0.31 +0.1
1,708,466 + CCNA_01589 0.31 -0.6
1,708,514 + CCNA_01589 0.35 +0.1
1,708,522 - CCNA_01589 0.36 +0.6
1,708,522 - CCNA_01589 0.36 -1.0
1,708,522 - CCNA_01589 0.36 -0.5
1,708,522 - CCNA_01589 0.36 +0.7
1,708,557 - CCNA_01589 0.39 +1.5
1,708,595 + CCNA_01589 0.42 -0.3
1,708,595 + CCNA_01589 0.42 -0.8
1,708,600 + CCNA_01589 0.43 -0.0
1,708,600 + CCNA_01589 0.43 -1.6
1,708,600 + CCNA_01589 0.43 -1.3
1,708,603 - CCNA_01589 0.43 +3.1
1,708,603 - CCNA_01589 0.43 +0.7
1,708,608 - CCNA_01589 0.44 +1.1
1,708,618 + CCNA_01589 0.45 +0.6
1,708,657 + CCNA_01589 0.48 -0.1
1,708,665 - CCNA_01589 0.49 +1.0
1,708,737 + CCNA_01589 0.55 -0.4
1,708,745 - +4.0
1,708,745 - CCNA_01589 0.56 +0.7
1,708,745 - CCNA_01589 0.56 -0.7
1,708,747 + CCNA_01589 0.56 -0.6
1,708,790 + CCNA_01589 0.60 +0.4
1,708,810 + CCNA_01589 0.61 +0.0
1,708,815 + CCNA_01589 0.62 -1.0
1,708,815 + CCNA_01589 0.62 -0.7
1,708,815 + CCNA_01589 0.62 -1.6
1,708,815 + CCNA_01589 0.62 -0.6
1,708,823 - CCNA_01589 0.63 -1.0
1,708,823 - CCNA_01589 0.63 +1.0
1,708,823 - CCNA_01589 0.63 +1.3
1,708,823 - CCNA_01589 0.63 +0.2
1,708,823 - +1.4
1,708,823 - CCNA_01589 0.63 -1.9
1,708,828 - CCNA_01589 0.63 +0.4
1,708,833 - CCNA_01589 0.63 -0.5
1,708,835 + CCNA_01589 0.64 -1.5
1,708,865 - CCNA_01589 0.66 -0.9
1,708,889 + CCNA_01589 0.68 -1.4
1,708,890 - CCNA_01589 0.68 +0.1
1,708,935 - CCNA_01589 0.72 -3.4
1,708,935 - CCNA_01589 0.72 -1.3
1,708,958 - CCNA_01589 0.74 +0.3
1,708,991 - CCNA_01589 0.77 -0.1
1,708,996 - CCNA_01589 0.78 -0.6
1,709,019 + CCNA_01589 0.80 -0.7
1,709,019 + CCNA_01589 0.80 -0.6
1,709,019 + CCNA_01589 0.80 +1.0
1,709,019 + CCNA_01589 0.80 +0.3
1,709,019 + CCNA_01589 0.80 +1.6
1,709,027 - CCNA_01589 0.80 +0.6
1,709,027 - CCNA_01589 0.80 -0.7
1,709,027 - CCNA_01589 0.80 -1.1
1,709,035 + CCNA_01589 0.81 +1.4
1,709,036 + CCNA_01589 0.81 +1.6
1,709,038 - CCNA_01589 0.81 -0.3
1,709,043 - CCNA_01589 0.82 +0.8
1,709,044 - CCNA_01589 0.82 +1.2
1,709,050 - CCNA_01589 0.82 -0.3
1,709,100 + CCNA_01589 0.87 -0.0
1,709,190 + -0.2
1,709,190 + -0.4
1,709,190 + +1.1
1,709,195 + +2.1
1,709,200 + +0.3
1,709,224 - +1.5
1,709,258 - -1.2
1,709,280 - +1.1
1,709,330 - +0.4
1,709,340 + +0.4
1,709,348 - -2.1
1,709,371 + +1.4
1,711,760 + +1.6
1,711,793 + CCNA_01591 0.13 +0.5
1,711,800 - CCNA_01591 0.15 +1.3
1,711,805 - CCNA_01591 0.15 -1.7
1,711,836 + CCNA_01591 0.20 -1.3
1,711,838 + CCNA_01591 0.21 -1.3
1,711,870 + CCNA_01591 0.26 +0.0
1,711,872 + CCNA_01591 0.26 -0.6
1,711,936 - CCNA_01591 0.36 -1.0
1,711,947 + CCNA_01591 0.38 +0.0
1,711,947 + CCNA_01591 0.38 +1.1
1,711,952 + CCNA_01591 0.39 -0.6
1,711,965 - CCNA_01591 0.41 +2.0
1,711,967 - CCNA_01591 0.41 +0.6
1,711,974 + CCNA_01591 0.42 +1.4
1,711,974 + CCNA_01591 0.42 -1.4
1,712,088 + CCNA_01591 0.60 -1.0
1,712,114 + CCNA_01591 0.64 -1.1
1,712,176 + CCNA_01591 0.74 -1.6
1,712,184 - CCNA_01591 0.76 +0.3
1,712,297 - -1.9
1,712,331 + -1.2
1,712,422 - -0.5
1,712,422 - -0.2
1,712,463 - +0.6
1,712,547 - CCNA_01592 0.22 -1.3
1,712,569 + CCNA_01592 0.27 +0.3
1,712,570 + CCNA_01592 0.27 -0.8
1,712,611 + CCNA_01592 0.37 -1.8
1,712,619 - CCNA_01592 0.39 -0.3
1,712,624 - CCNA_01592 0.40 -0.1
1,712,624 - CCNA_01592 0.40 +0.6
1,712,626 + CCNA_01592 0.40 +1.2
1,712,626 + CCNA_01592 0.40 +0.3
1,712,626 + CCNA_01592 0.40 +1.6
1,712,631 + CCNA_01592 0.41 +1.1
1,712,634 - CCNA_01592 0.42 +0.4
1,712,634 - CCNA_01592 0.42 +0.5
1,712,653 + CCNA_01592 0.47 -1.3
1,712,682 + CCNA_01592 0.53 -0.9
1,712,708 + CCNA_01592 0.59 +0.7

Or see this region's nucleotide sequence