Experiment: PYE with Paraquat dichloride 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01059 and CCNA_01060 are separated by 242 nucleotides CCNA_01060 and CCNA_01061 are separated by 67 nucleotides
CCNA_01059: CCNA_01059 - S-layer protein rsaA, at 1,159,693 to 1,162,773
_01059
CCNA_01060: CCNA_01060 - type I protein secretion ATP-binding protein RsaD, at 1,163,016 to 1,164,752
_01060
CCNA_01061: CCNA_01061 - type I secretion adaptor protein RsaE, at 1,164,820 to 1,166,130
_01061
Position (kb)
1163
1164
1165 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 1162.257 kb on + strand, within CCNA_01059 at 1162.359 kb on + strand, within CCNA_01059 at 1162.359 kb on + strand, within CCNA_01059 at 1162.382 kb on + strand, within CCNA_01059 at 1162.796 kb on + strand at 1162.888 kb on - strand at 1162.981 kb on - strand at 1163.057 kb on + strand at 1163.087 kb on - strand at 1163.265 kb on - strand, within CCNA_01060 at 1163.315 kb on + strand, within CCNA_01060 at 1163.396 kb on + strand, within CCNA_01060 at 1163.404 kb on - strand, within CCNA_01060 at 1163.613 kb on - strand, within CCNA_01060 at 1163.636 kb on + strand, within CCNA_01060 at 1163.764 kb on - strand, within CCNA_01060 at 1163.863 kb on + strand, within CCNA_01060 at 1164.163 kb on + strand, within CCNA_01060 at 1164.355 kb on + strand, within CCNA_01060 at 1164.416 kb on + strand, within CCNA_01060 at 1164.441 kb on + strand, within CCNA_01060 at 1164.548 kb on + strand, within CCNA_01060 at 1164.696 kb on - strand at 1164.696 kb on - strand at 1164.734 kb on + strand at 1164.773 kb on + strand at 1164.773 kb on + strand at 1164.892 kb on + strand at 1164.918 kb on - strand at 1164.944 kb on + strand at 1164.992 kb on + strand, within CCNA_01061 at 1165.050 kb on + strand, within CCNA_01061 at 1165.087 kb on + strand, within CCNA_01061 at 1165.166 kb on + strand, within CCNA_01061 at 1165.204 kb on - strand, within CCNA_01061 at 1165.293 kb on - strand, within CCNA_01061 at 1165.367 kb on + strand, within CCNA_01061 at 1165.518 kb on + strand, within CCNA_01061 at 1165.526 kb on - strand, within CCNA_01061 at 1165.559 kb on - strand, within CCNA_01061 at 1165.559 kb on - strand, within CCNA_01061 at 1165.705 kb on + strand, within CCNA_01061 at 1165.713 kb on - strand, within CCNA_01061
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml remove 1,162,257 + CCNA_01059 0.83 +4.8 1,162,359 + CCNA_01059 0.87 +3.4 1,162,359 + CCNA_01059 0.87 +3.8 1,162,382 + CCNA_01059 0.87 +4.8 1,162,796 + +1.8 1,162,888 - -0.5 1,162,981 - +0.4 1,163,057 + +3.7 1,163,087 - -0.6 1,163,265 - CCNA_01060 0.14 +1.5 1,163,315 + CCNA_01060 0.17 +3.6 1,163,396 + CCNA_01060 0.22 +2.6 1,163,404 - CCNA_01060 0.22 +3.1 1,163,613 - CCNA_01060 0.34 +2.6 1,163,636 + CCNA_01060 0.36 +3.1 1,163,764 - CCNA_01060 0.43 +2.7 1,163,863 + CCNA_01060 0.49 +3.5 1,164,163 + CCNA_01060 0.66 +3.6 1,164,355 + CCNA_01060 0.77 +3.5 1,164,416 + CCNA_01060 0.81 +3.6 1,164,441 + CCNA_01060 0.82 +3.0 1,164,548 + CCNA_01060 0.88 +2.9 1,164,696 - +1.6 1,164,696 - +0.2 1,164,734 + +1.3 1,164,773 + +0.7 1,164,773 + +0.8 1,164,892 + +3.3 1,164,918 - +1.8 1,164,944 + +2.9 1,164,992 + CCNA_01061 0.13 +3.5 1,165,050 + CCNA_01061 0.18 +4.3 1,165,087 + CCNA_01061 0.20 +2.7 1,165,166 + CCNA_01061 0.26 +3.5 1,165,204 - CCNA_01061 0.29 +2.3 1,165,293 - CCNA_01061 0.36 +0.1 1,165,367 + CCNA_01061 0.42 +3.7 1,165,518 + CCNA_01061 0.53 +3.5 1,165,526 - CCNA_01061 0.54 +2.6 1,165,559 - CCNA_01061 0.56 -1.2 1,165,559 - CCNA_01061 0.56 +0.5 1,165,705 + CCNA_01061 0.68 +3.9 1,165,713 - CCNA_01061 0.68 +0.3
Or see this region's nucleotide sequence