Experiment: PYE with Paraquat dichloride 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00865 and CCNA_00866 are separated by 16 nucleotides CCNA_00866 and CCNA_00867 are separated by 186 nucleotides CCNA_00867 and CCNA_03889 are separated by 254 nucleotides
CCNA_00865: CCNA_00865 - alpha-ketoglutaric semialdehyde dehydrogenase xylA, at 943,210 to 944,646
_00865
CCNA_00866: CCNA_00866 - 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) <small>(from data)</small>, at 944,663 to 945,817
_00866
CCNA_00867: CCNA_00867 - hypothetical protein, at 946,004 to 946,492
_00867
CCNA_03889: CCNA_03889 - hypothetical protein, at 946,747 to 947,268
_03889
Position (kb) 944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 943.690 kb on - strand, within CCNA_00865 at 943.702 kb on + strand, within CCNA_00865 at 943.702 kb on - strand, within CCNA_00865 at 943.723 kb on - strand, within CCNA_00865 at 943.802 kb on + strand, within CCNA_00865 at 943.802 kb on + strand, within CCNA_00865 at 943.802 kb on + strand, within CCNA_00865 at 943.807 kb on + strand, within CCNA_00865 at 943.834 kb on + strand, within CCNA_00865 at 943.842 kb on - strand, within CCNA_00865 at 943.856 kb on + strand, within CCNA_00865 at 943.858 kb on + strand, within CCNA_00865 at 943.863 kb on + strand, within CCNA_00865 at 943.863 kb on + strand, within CCNA_00865 at 943.868 kb on + strand, within CCNA_00865 at 943.873 kb on + strand, within CCNA_00865 at 943.876 kb on - strand, within CCNA_00865 at 943.904 kb on + strand, within CCNA_00865 at 943.921 kb on + strand, within CCNA_00865 at 943.922 kb on - strand, within CCNA_00865 at 943.926 kb on + strand, within CCNA_00865 at 944.003 kb on + strand, within CCNA_00865 at 944.003 kb on + strand, within CCNA_00865 at 944.086 kb on - strand, within CCNA_00865 at 944.126 kb on + strand, within CCNA_00865 at 944.134 kb on - strand, within CCNA_00865 at 944.134 kb on - strand, within CCNA_00865 at 944.141 kb on + strand, within CCNA_00865 at 944.205 kb on - strand, within CCNA_00865 at 944.209 kb on + strand, within CCNA_00865 at 944.212 kb on - strand, within CCNA_00865 at 944.214 kb on + strand, within CCNA_00865 at 944.214 kb on + strand, within CCNA_00865 at 944.214 kb on + strand, within CCNA_00865 at 944.222 kb on - strand, within CCNA_00865 at 944.222 kb on - strand, within CCNA_00865 at 944.222 kb on - strand, within CCNA_00865 at 944.242 kb on + strand, within CCNA_00865 at 944.243 kb on - strand, within CCNA_00865 at 944.270 kb on + strand, within CCNA_00865 at 944.270 kb on + strand, within CCNA_00865 at 944.278 kb on + strand, within CCNA_00865 at 944.293 kb on + strand, within CCNA_00865 at 944.293 kb on + strand, within CCNA_00865 at 944.298 kb on + strand, within CCNA_00865 at 944.301 kb on - strand, within CCNA_00865 at 944.301 kb on - strand, within CCNA_00865 at 944.365 kb on + strand, within CCNA_00865 at 944.374 kb on - strand at 944.408 kb on - strand, within CCNA_00865 at 944.408 kb on - strand, within CCNA_00865 at 944.427 kb on + strand, within CCNA_00865 at 944.497 kb on - strand, within CCNA_00865 at 944.519 kb on + strand at 944.527 kb on - strand at 944.536 kb on + strand at 944.558 kb on + strand at 944.574 kb on + strand at 944.574 kb on + strand at 944.636 kb on - strand at 944.669 kb on - strand at 944.698 kb on + strand at 944.701 kb on - strand at 944.706 kb on - strand at 944.730 kb on - strand at 944.816 kb on - strand, within CCNA_00866 at 944.818 kb on + strand, within CCNA_00866 at 944.842 kb on - strand, within CCNA_00866 at 944.901 kb on + strand, within CCNA_00866 at 944.901 kb on + strand, within CCNA_00866 at 944.901 kb on + strand, within CCNA_00866 at 944.901 kb on + strand, within CCNA_00866 at 944.901 kb on + strand, within CCNA_00866 at 944.909 kb on - strand, within CCNA_00866 at 944.909 kb on - strand, within CCNA_00866 at 944.909 kb on - strand, within CCNA_00866 at 944.909 kb on - strand, within CCNA_00866 at 944.909 kb on - strand, within CCNA_00866 at 944.942 kb on - strand, within CCNA_00866 at 944.957 kb on - strand, within CCNA_00866 at 944.968 kb on + strand, within CCNA_00866 at 944.981 kb on - strand at 945.086 kb on - strand, within CCNA_00866 at 945.089 kb on - strand, within CCNA_00866 at 945.101 kb on + strand, within CCNA_00866 at 945.109 kb on - strand, within CCNA_00866 at 945.136 kb on + strand, within CCNA_00866 at 945.144 kb on - strand, within CCNA_00866 at 945.149 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.172 kb on + strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.191 kb on + strand, within CCNA_00866 at 945.237 kb on + strand, within CCNA_00866 at 945.269 kb on - strand, within CCNA_00866 at 945.271 kb on + strand, within CCNA_00866 at 945.273 kb on + strand, within CCNA_00866 at 945.318 kb on + strand, within CCNA_00866 at 945.324 kb on - strand, within CCNA_00866 at 945.404 kb on - strand, within CCNA_00866 at 945.481 kb on - strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.495 kb on - strand, within CCNA_00866 at 945.517 kb on - strand, within CCNA_00866 at 945.543 kb on + strand, within CCNA_00866 at 945.548 kb on + strand, within CCNA_00866 at 945.555 kb on + strand, within CCNA_00866 at 945.565 kb on + strand, within CCNA_00866 at 945.573 kb on + strand, within CCNA_00866 at 945.578 kb on - strand, within CCNA_00866 at 945.583 kb on - strand, within CCNA_00866 at 945.583 kb on - strand, within CCNA_00866 at 945.584 kb on + strand, within CCNA_00866 at 945.585 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand at 945.663 kb on - strand, within CCNA_00866 at 945.668 kb on + strand, within CCNA_00866 at 945.681 kb on - strand, within CCNA_00866 at 945.682 kb on + strand, within CCNA_00866 at 945.705 kb on + strand at 945.745 kb on - strand at 945.762 kb on + strand at 945.770 kb on - strand at 945.781 kb on - strand at 945.781 kb on - strand at 945.868 kb on - strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.924 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 946.011 kb on + strand at 946.065 kb on + strand, within CCNA_00867 at 946.065 kb on - strand, within CCNA_00867 at 946.065 kb on - strand, within CCNA_00867 at 946.132 kb on + strand, within CCNA_00867 at 946.135 kb on - strand, within CCNA_00867 at 946.143 kb on + strand, within CCNA_00867 at 946.143 kb on + strand, within CCNA_00867 at 946.146 kb on + strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.161 kb on + strand, within CCNA_00867 at 946.168 kb on - strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.198 kb on - strand, within CCNA_00867 at 946.198 kb on - strand, within CCNA_00867 at 946.237 kb on + strand, within CCNA_00867 at 946.237 kb on + strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.246 kb on - strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.332 kb on - strand, within CCNA_00867 at 946.334 kb on + strand, within CCNA_00867 at 946.340 kb on + strand, within CCNA_00867 at 946.376 kb on + strand, within CCNA_00867 at 946.381 kb on + strand, within CCNA_00867 at 946.389 kb on - strand, within CCNA_00867 at 946.405 kb on + strand, within CCNA_00867 at 946.405 kb on + strand, within CCNA_00867 at 946.413 kb on - strand, within CCNA_00867 at 946.457 kb on + strand at 946.464 kb on + strand at 946.494 kb on - strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.517 kb on - strand at 946.553 kb on - strand at 946.589 kb on + strand at 946.609 kb on - strand at 946.655 kb on + strand at 946.656 kb on + strand at 946.656 kb on + strand at 946.658 kb on - strand at 946.664 kb on - strand at 946.685 kb on + strand at 946.711 kb on - strand at 946.727 kb on - strand at 946.741 kb on + strand at 946.767 kb on - strand at 946.809 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml remove 943,690 - CCNA_00865 0.33 -0.2 943,702 + CCNA_00865 0.34 -1.1 943,702 - CCNA_00865 0.34 +0.6 943,723 - CCNA_00865 0.36 -0.1 943,802 + CCNA_00865 0.41 +0.8 943,802 + CCNA_00865 0.41 -0.7 943,802 + CCNA_00865 0.41 -1.3 943,807 + CCNA_00865 0.42 +0.5 943,834 + CCNA_00865 0.43 +0.3 943,842 - CCNA_00865 0.44 +0.7 943,856 + CCNA_00865 0.45 -1.4 943,858 + CCNA_00865 0.45 -1.3 943,863 + CCNA_00865 0.45 -1.3 943,863 + CCNA_00865 0.45 +2.7 943,868 + CCNA_00865 0.46 -2.2 943,873 + CCNA_00865 0.46 +0.1 943,876 - CCNA_00865 0.46 +0.7 943,904 + CCNA_00865 0.48 +0.5 943,921 + CCNA_00865 0.49 +0.4 943,922 - CCNA_00865 0.50 -1.3 943,926 + CCNA_00865 0.50 -0.3 944,003 + CCNA_00865 0.55 -2.3 944,003 + CCNA_00865 0.55 +0.1 944,086 - CCNA_00865 0.61 +0.6 944,126 + CCNA_00865 0.64 -1.5 944,134 - CCNA_00865 0.64 -1.3 944,134 - CCNA_00865 0.64 +0.6 944,141 + CCNA_00865 0.65 +3.0 944,205 - CCNA_00865 0.69 -0.1 944,209 + CCNA_00865 0.70 -0.3 944,212 - CCNA_00865 0.70 -1.5 944,214 + CCNA_00865 0.70 +0.7 944,214 + CCNA_00865 0.70 -0.2 944,214 + CCNA_00865 0.70 +0.2 944,222 - CCNA_00865 0.70 +0.6 944,222 - CCNA_00865 0.70 -1.3 944,222 - CCNA_00865 0.70 +0.0 944,242 + CCNA_00865 0.72 -1.3 944,243 - CCNA_00865 0.72 +1.6 944,270 + CCNA_00865 0.74 -0.2 944,270 + CCNA_00865 0.74 -0.4 944,278 + CCNA_00865 0.74 +0.4 944,293 + CCNA_00865 0.75 -1.0 944,293 + CCNA_00865 0.75 +2.5 944,298 + CCNA_00865 0.76 -2.3 944,301 - CCNA_00865 0.76 -1.2 944,301 - CCNA_00865 0.76 -1.3 944,365 + CCNA_00865 0.80 +2.7 944,374 - +0.9 944,408 - CCNA_00865 0.83 -0.1 944,408 - CCNA_00865 0.83 -0.4 944,427 + CCNA_00865 0.85 -0.4 944,497 - CCNA_00865 0.90 +0.1 944,519 + +0.4 944,527 - -0.9 944,536 + -0.7 944,558 + +1.1 944,574 + +2.1 944,574 + -0.2 944,636 - -0.2 944,669 - +0.6 944,698 + -1.6 944,701 - +0.5 944,706 - -0.3 944,730 - +0.6 944,816 - CCNA_00866 0.13 -1.7 944,818 + CCNA_00866 0.13 -1.7 944,842 - CCNA_00866 0.15 -0.4 944,901 + CCNA_00866 0.21 -0.8 944,901 + CCNA_00866 0.21 -1.0 944,901 + CCNA_00866 0.21 +1.2 944,901 + CCNA_00866 0.21 -2.2 944,901 + CCNA_00866 0.21 -0.1 944,909 - CCNA_00866 0.21 -1.7 944,909 - CCNA_00866 0.21 +1.6 944,909 - CCNA_00866 0.21 -1.4 944,909 - CCNA_00866 0.21 +3.7 944,909 - CCNA_00866 0.21 -0.3 944,942 - CCNA_00866 0.24 +0.6 944,957 - CCNA_00866 0.25 -0.7 944,968 + CCNA_00866 0.26 +0.8 944,981 - +0.9 945,086 - CCNA_00866 0.37 +0.0 945,089 - CCNA_00866 0.37 +0.7 945,101 + CCNA_00866 0.38 -1.6 945,109 - CCNA_00866 0.39 -0.4 945,136 + CCNA_00866 0.41 +0.3 945,144 - CCNA_00866 0.42 +0.4 945,149 + CCNA_00866 0.42 +1.4 945,167 + CCNA_00866 0.44 +0.3 945,167 + CCNA_00866 0.44 -0.7 945,167 + CCNA_00866 0.44 -1.4 945,172 + CCNA_00866 0.44 -0.7 945,175 - CCNA_00866 0.44 +0.2 945,175 - CCNA_00866 0.44 -0.7 945,175 - CCNA_00866 0.44 -1.4 945,175 - CCNA_00866 0.44 +2.2 945,191 + CCNA_00866 0.46 +0.7 945,237 + CCNA_00866 0.50 -1.2 945,269 - CCNA_00866 0.52 -0.6 945,271 + CCNA_00866 0.53 -0.7 945,273 + CCNA_00866 0.53 -1.4 945,318 + CCNA_00866 0.57 -0.8 945,324 - CCNA_00866 0.57 -0.8 945,404 - CCNA_00866 0.64 -1.1 945,481 - CCNA_00866 0.71 -0.5 945,494 + CCNA_00866 0.72 -0.8 945,494 + CCNA_00866 0.72 -1.5 945,494 + CCNA_00866 0.72 -1.4 945,495 - CCNA_00866 0.72 -0.3 945,517 - CCNA_00866 0.74 -1.8 945,543 + CCNA_00866 0.76 +0.9 945,548 + CCNA_00866 0.77 +0.0 945,555 + CCNA_00866 0.77 +2.2 945,565 + CCNA_00866 0.78 +1.3 945,573 + CCNA_00866 0.79 +0.0 945,578 - CCNA_00866 0.79 +0.2 945,583 - CCNA_00866 0.80 -2.4 945,583 - CCNA_00866 0.80 -1.8 945,584 + CCNA_00866 0.80 -0.5 945,585 + CCNA_00866 0.80 -0.3 945,621 + CCNA_00866 0.83 -0.1 945,621 + CCNA_00866 0.83 -1.9 945,621 + CCNA_00866 0.83 -0.2 945,621 + CCNA_00866 0.83 -1.2 945,621 + CCNA_00866 0.83 -1.5 945,629 - CCNA_00866 0.84 -0.6 945,629 - CCNA_00866 0.84 -0.8 945,629 - CCNA_00866 0.84 -1.3 945,629 - CCNA_00866 0.84 -0.8 945,629 - +0.7 945,663 - CCNA_00866 0.87 -1.4 945,668 + CCNA_00866 0.87 +0.2 945,681 - CCNA_00866 0.88 -1.4 945,682 + CCNA_00866 0.88 +0.9 945,705 + -0.3 945,745 - +0.0 945,762 + -1.7 945,770 - -2.9 945,781 - +0.3 945,781 - +0.6 945,868 - -0.2 945,921 + -2.6 945,921 + -0.2 945,921 + +0.9 945,921 + -0.9 945,921 + -1.4 945,921 + -1.4 945,921 + -0.2 945,921 + -0.4 945,921 + -1.5 945,921 + +0.5 945,921 + +1.1 945,921 + -0.6 945,924 - +1.4 945,929 - -0.7 945,929 - -1.7 945,929 - -2.3 945,929 - +0.4 945,929 - -3.6 945,929 - -0.9 945,929 - +0.2 945,929 - +0.4 946,011 + +1.5 946,065 + CCNA_00867 0.12 -1.5 946,065 - CCNA_00867 0.12 -0.4 946,065 - CCNA_00867 0.12 -0.2 946,132 + CCNA_00867 0.26 -0.2 946,135 - CCNA_00867 0.27 -0.5 946,143 + CCNA_00867 0.28 -0.9 946,143 + CCNA_00867 0.28 -0.1 946,146 + CCNA_00867 0.29 -1.9 946,151 - CCNA_00867 0.30 -2.1 946,151 - CCNA_00867 0.30 -1.2 946,151 - CCNA_00867 0.30 -1.2 946,151 - CCNA_00867 0.30 +0.0 946,161 + CCNA_00867 0.32 -1.2 946,168 - CCNA_00867 0.34 +0.6 946,190 + CCNA_00867 0.38 -0.3 946,190 + CCNA_00867 0.38 -0.4 946,198 - CCNA_00867 0.40 -0.7 946,198 - CCNA_00867 0.40 +0.7 946,237 + CCNA_00867 0.48 +1.9 946,237 + CCNA_00867 0.48 -1.2 946,245 - CCNA_00867 0.49 -1.3 946,245 - CCNA_00867 0.49 +1.9 946,245 - CCNA_00867 0.49 +1.0 946,245 - CCNA_00867 0.49 -0.9 946,245 - CCNA_00867 0.49 +0.3 946,246 - CCNA_00867 0.49 +1.5 946,304 + CCNA_00867 0.61 +1.2 946,304 + CCNA_00867 0.61 +0.0 946,304 + CCNA_00867 0.61 -0.3 946,312 - CCNA_00867 0.63 -1.1 946,312 - CCNA_00867 0.63 +1.8 946,312 - CCNA_00867 0.63 -0.9 946,312 - CCNA_00867 0.63 -0.4 946,312 - CCNA_00867 0.63 +1.2 946,324 + CCNA_00867 0.65 +0.8 946,324 + CCNA_00867 0.65 +3.2 946,324 + CCNA_00867 0.65 -0.5 946,324 + CCNA_00867 0.65 -0.0 946,332 - CCNA_00867 0.67 -1.3 946,334 + CCNA_00867 0.67 -0.9 946,340 + CCNA_00867 0.69 +0.9 946,376 + CCNA_00867 0.76 +0.2 946,381 + CCNA_00867 0.77 +0.6 946,389 - CCNA_00867 0.79 -1.1 946,405 + CCNA_00867 0.82 +1.4 946,405 + CCNA_00867 0.82 -0.3 946,413 - CCNA_00867 0.84 -1.2 946,457 + +0.1 946,464 + +2.0 946,494 - -0.7 946,509 + -0.6 946,509 + +0.2 946,509 + +1.2 946,509 + -0.1 946,509 + +1.8 946,509 + -0.5 946,509 + +1.2 946,509 + -0.5 946,517 - +0.8 946,553 - -0.6 946,589 + -0.9 946,609 - +0.9 946,655 + +0.3 946,656 + -0.6 946,656 + -1.1 946,658 - -0.9 946,664 - +0.8 946,685 + +1.1 946,711 - -0.1 946,727 - +0.0 946,741 + +1.1 946,767 - -1.2 946,809 + CCNA_03889 0.12 +0.1 946,815 + CCNA_03889 0.13 -0.7 946,815 + CCNA_03889 0.13 -2.4 946,815 + CCNA_03889 0.13 -0.4 946,815 + CCNA_03889 0.13 +0.5 946,815 + CCNA_03889 0.13 -1.1
Or see this region's nucleotide sequence