Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00481

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00480 and CCNA_00481 are separated by 329 nucleotidesCCNA_00481 and CCNA_00482 overlap by 14 nucleotides CCNA_00480: CCNA_00480 - bacteriophage P4 integrase, at 495,724 to 497,022 _00480 CCNA_00481: CCNA_00481 - HipB transcriptional regulator, at 497,352 to 497,597 _00481 CCNA_00482: CCNA_00482 - toxin protein module HipA, at 497,584 to 498,855 _00482 Position (kb) 497 498Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 496.372 kb on - strand, within CCNA_00480at 496.387 kb on + strand, within CCNA_00480at 496.417 kb on + strand, within CCNA_00480at 496.417 kb on + strand, within CCNA_00480at 496.425 kb on - strand, within CCNA_00480at 496.443 kb on + strand, within CCNA_00480at 496.453 kb on + strand, within CCNA_00480at 496.453 kb on + strand, within CCNA_00480at 496.453 kb on + strand, within CCNA_00480at 496.461 kb on - strand, within CCNA_00480at 496.461 kb on - strand, within CCNA_00480at 496.463 kb on + strand, within CCNA_00480at 496.463 kb on + strand, within CCNA_00480at 496.463 kb on + strand, within CCNA_00480at 496.471 kb on - strand, within CCNA_00480at 496.499 kb on + strand, within CCNA_00480at 496.501 kb on - strand, within CCNA_00480at 496.518 kb on + strand, within CCNA_00480at 496.529 kb on + strand, within CCNA_00480at 496.529 kb on + strand, within CCNA_00480at 496.537 kb on - strand, within CCNA_00480at 496.541 kb on - strand, within CCNA_00480at 496.554 kb on - strand, within CCNA_00480at 496.585 kb on + strand, within CCNA_00480at 496.588 kb on - strand, within CCNA_00480at 496.589 kb on - strand, within CCNA_00480at 496.593 kb on - strand, within CCNA_00480at 496.609 kb on + strand, within CCNA_00480at 496.617 kb on - strand, within CCNA_00480at 496.617 kb on - strand, within CCNA_00480at 496.631 kb on - strand, within CCNA_00480at 496.633 kb on + strand, within CCNA_00480at 496.725 kb on - strand, within CCNA_00480at 496.793 kb on + strand, within CCNA_00480at 496.796 kb on - strand, within CCNA_00480at 496.808 kb on + strand, within CCNA_00480at 496.808 kb on + strand, within CCNA_00480at 496.816 kb on - strand, within CCNA_00480at 496.819 kb on + strand, within CCNA_00480at 496.820 kb on + strand, within CCNA_00480at 496.820 kb on + strand, within CCNA_00480at 496.821 kb on - strand, within CCNA_00480at 496.821 kb on - strand, within CCNA_00480at 496.842 kb on + strand, within CCNA_00480at 496.842 kb on + strand, within CCNA_00480at 496.842 kb on + strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.858 kb on - strand, within CCNA_00480at 496.867 kb on + strand, within CCNA_00480at 496.867 kb on + strand, within CCNA_00480at 496.868 kb on - strand, within CCNA_00480at 496.881 kb on - strand, within CCNA_00480at 496.887 kb on - strand, within CCNA_00480at 496.889 kb on + strand, within CCNA_00480at 496.897 kb on - strandat 496.903 kb on - strandat 496.961 kb on + strandat 496.969 kb on - strandat 496.969 kb on - strandat 496.969 kb on - strandat 496.969 kb on - strandat 496.986 kb on + strandat 497.033 kb on + strandat 497.033 kb on + strandat 497.033 kb on + strandat 497.033 kb on + strandat 497.033 kb on + strandat 497.041 kb on - strandat 497.041 kb on - strandat 497.041 kb on - strandat 497.041 kb on - strandat 497.052 kb on + strandat 497.059 kb on + strandat 497.060 kb on - strandat 497.067 kb on - strandat 497.079 kb on + strandat 497.145 kb on + strandat 497.177 kb on + strandat 497.177 kb on + strandat 497.177 kb on + strandat 497.185 kb on - strandat 497.201 kb on + strandat 497.212 kb on + strandat 497.220 kb on - strandat 497.227 kb on + strandat 497.227 kb on - strandat 497.229 kb on + strandat 497.259 kb on + strandat 497.267 kb on - strandat 497.370 kb on + strandat 497.370 kb on + strandat 497.370 kb on + strandat 497.378 kb on - strand, within CCNA_00481at 497.561 kb on + strand, within CCNA_00481at 497.566 kb on + strand, within CCNA_00481at 497.566 kb on + strand, within CCNA_00481at 497.574 kb on - strandat 497.606 kb on - strandat 497.617 kb on + strandat 497.642 kb on + strandat 497.654 kb on - strandat 497.673 kb on + strandat 497.695 kb on + strandat 497.695 kb on + strandat 497.703 kb on - strandat 497.705 kb on + strandat 497.721 kb on + strand, within CCNA_00482at 497.734 kb on - strand, within CCNA_00482at 497.772 kb on - strand, within CCNA_00482at 497.772 kb on - strand, within CCNA_00482at 497.812 kb on - strand, within CCNA_00482at 497.813 kb on - strand, within CCNA_00482at 497.813 kb on - strand, within CCNA_00482at 497.846 kb on + strand, within CCNA_00482at 497.846 kb on + strand, within CCNA_00482at 497.862 kb on - strand, within CCNA_00482at 497.890 kb on + strand, within CCNA_00482at 497.898 kb on - strand, within CCNA_00482at 497.898 kb on - strand, within CCNA_00482at 497.898 kb on - strand, within CCNA_00482at 497.913 kb on - strand, within CCNA_00482at 497.925 kb on + strand, within CCNA_00482at 497.950 kb on - strand, within CCNA_00482at 497.994 kb on - strand, within CCNA_00482at 498.093 kb on + strand, within CCNA_00482at 498.108 kb on + strand, within CCNA_00482at 498.116 kb on + strand, within CCNA_00482at 498.123 kb on + strand, within CCNA_00482at 498.124 kb on - strand, within CCNA_00482at 498.130 kb on - strand, within CCNA_00482at 498.131 kb on - strand, within CCNA_00482at 498.131 kb on - strand, within CCNA_00482at 498.136 kb on + strand, within CCNA_00482at 498.194 kb on + strand, within CCNA_00482at 498.194 kb on + strand, within CCNA_00482at 498.204 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.230 kb on + strand, within CCNA_00482at 498.238 kb on - strand, within CCNA_00482at 498.245 kb on + strand, within CCNA_00482at 498.298 kb on - strand, within CCNA_00482at 498.328 kb on + strand, within CCNA_00482at 498.369 kb on - strand, within CCNA_00482at 498.389 kb on + strand, within CCNA_00482at 498.389 kb on + strand, within CCNA_00482at 498.389 kb on + strand, within CCNA_00482at 498.389 kb on + strand, within CCNA_00482at 498.390 kb on + strand, within CCNA_00482at 498.390 kb on + strand, within CCNA_00482at 498.394 kb on + strand, within CCNA_00482at 498.397 kb on - strandat 498.397 kb on - strand, within CCNA_00482at 498.397 kb on - strand, within CCNA_00482at 498.498 kb on + strand, within CCNA_00482at 498.498 kb on + strand, within CCNA_00482at 498.501 kb on + strand, within CCNA_00482at 498.507 kb on - strand, within CCNA_00482at 498.518 kb on - strand, within CCNA_00482at 498.545 kb on + strand, within CCNA_00482at 498.550 kb on + strand, within CCNA_00482at 498.550 kb on + strand, within CCNA_00482at 498.550 kb on + strand, within CCNA_00482at 498.558 kb on + strand, within CCNA_00482at 498.558 kb on - strand, within CCNA_00482at 498.558 kb on - strand, within CCNA_00482at 498.567 kb on + strand, within CCNA_00482

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml
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496,372 - CCNA_00480 0.50 -0.4
496,387 + CCNA_00480 0.51 -1.2
496,417 + CCNA_00480 0.53 +0.5
496,417 + CCNA_00480 0.53 -0.1
496,425 - CCNA_00480 0.54 -0.3
496,443 + CCNA_00480 0.55 -2.4
496,453 + CCNA_00480 0.56 -0.8
496,453 + CCNA_00480 0.56 -2.8
496,453 + CCNA_00480 0.56 -2.0
496,461 - CCNA_00480 0.57 +0.8
496,461 - CCNA_00480 0.57 -1.3
496,463 + CCNA_00480 0.57 +0.5
496,463 + CCNA_00480 0.57 +0.1
496,463 + CCNA_00480 0.57 -1.2
496,471 - CCNA_00480 0.58 -2.0
496,499 + CCNA_00480 0.60 +1.7
496,501 - CCNA_00480 0.60 -0.2
496,518 + CCNA_00480 0.61 -0.9
496,529 + CCNA_00480 0.62 -1.9
496,529 + CCNA_00480 0.62 -1.3
496,537 - CCNA_00480 0.63 +0.1
496,541 - CCNA_00480 0.63 -1.0
496,554 - CCNA_00480 0.64 +0.6
496,585 + CCNA_00480 0.66 -0.0
496,588 - CCNA_00480 0.67 -1.0
496,589 - CCNA_00480 0.67 -0.8
496,593 - CCNA_00480 0.67 +0.2
496,609 + CCNA_00480 0.68 -1.5
496,617 - CCNA_00480 0.69 +1.7
496,617 - CCNA_00480 0.69 +1.4
496,631 - CCNA_00480 0.70 -0.3
496,633 + CCNA_00480 0.70 +0.9
496,725 - CCNA_00480 0.77 +0.5
496,793 + CCNA_00480 0.82 +0.5
496,796 - CCNA_00480 0.83 -0.6
496,808 + CCNA_00480 0.83 +0.9
496,808 + CCNA_00480 0.83 +0.2
496,816 - CCNA_00480 0.84 -0.0
496,819 + CCNA_00480 0.84 -0.7
496,820 + CCNA_00480 0.84 -0.5
496,820 + CCNA_00480 0.84 -0.2
496,821 - CCNA_00480 0.84 +0.1
496,821 - CCNA_00480 0.84 +2.5
496,842 + CCNA_00480 0.86 -1.6
496,842 + CCNA_00480 0.86 +0.1
496,842 + CCNA_00480 0.86 +1.4
496,850 - CCNA_00480 0.87 -0.4
496,850 - CCNA_00480 0.87 -0.7
496,850 - CCNA_00480 0.87 +0.9
496,850 - CCNA_00480 0.87 +1.0
496,850 - CCNA_00480 0.87 -0.1
496,850 - CCNA_00480 0.87 -1.9
496,850 - CCNA_00480 0.87 +0.4
496,850 - CCNA_00480 0.87 +1.0
496,858 - CCNA_00480 0.87 +0.4
496,867 + CCNA_00480 0.88 -1.8
496,867 + CCNA_00480 0.88 +1.6
496,868 - CCNA_00480 0.88 -1.2
496,881 - CCNA_00480 0.89 +1.1
496,887 - CCNA_00480 0.90 +1.0
496,889 + CCNA_00480 0.90 +1.2
496,897 - +1.3
496,903 - -0.3
496,961 + -0.6
496,969 - -2.7
496,969 - -0.4
496,969 - +0.2
496,969 - -0.1
496,986 + -3.0
497,033 + -1.6
497,033 + -0.6
497,033 + -1.6
497,033 + -0.8
497,033 + +0.5
497,041 - +2.2
497,041 - -2.1
497,041 - -0.1
497,041 - -0.4
497,052 + -0.8
497,059 + -0.6
497,060 - -0.1
497,067 - -0.8
497,079 + -1.1
497,145 + +0.9
497,177 + -1.2
497,177 + +2.7
497,177 + +0.6
497,185 - +0.9
497,201 + +1.0
497,212 + -0.8
497,220 - +0.2
497,227 + -0.2
497,227 - -0.6
497,229 + -0.2
497,259 + -1.7
497,267 - -0.1
497,370 + +1.2
497,370 + +1.1
497,370 + +0.9
497,378 - CCNA_00481 0.11 -2.4
497,561 + CCNA_00481 0.85 -0.3
497,566 + CCNA_00481 0.87 -1.7
497,566 + CCNA_00481 0.87 -1.2
497,574 - -0.6
497,606 - -1.3
497,617 + +1.6
497,642 + -0.1
497,654 - -0.3
497,673 + +0.0
497,695 + -0.6
497,695 + -1.1
497,703 - +0.5
497,705 + +1.4
497,721 + CCNA_00482 0.11 +0.8
497,734 - CCNA_00482 0.12 -0.4
497,772 - CCNA_00482 0.15 +1.1
497,772 - CCNA_00482 0.15 -0.9
497,812 - CCNA_00482 0.18 +1.1
497,813 - CCNA_00482 0.18 +1.1
497,813 - CCNA_00482 0.18 +0.9
497,846 + CCNA_00482 0.21 +0.2
497,846 + CCNA_00482 0.21 +0.0
497,862 - CCNA_00482 0.22 -0.2
497,890 + CCNA_00482 0.24 +0.8
497,898 - CCNA_00482 0.25 +0.1
497,898 - CCNA_00482 0.25 -0.1
497,898 - CCNA_00482 0.25 -0.6
497,913 - CCNA_00482 0.26 -0.6
497,925 + CCNA_00482 0.27 -0.0
497,950 - CCNA_00482 0.29 +1.9
497,994 - CCNA_00482 0.32 +0.2
498,093 + CCNA_00482 0.40 +0.8
498,108 + CCNA_00482 0.41 +0.7
498,116 + CCNA_00482 0.42 +0.2
498,123 + CCNA_00482 0.42 -2.2
498,124 - CCNA_00482 0.42 -0.3
498,130 - CCNA_00482 0.43 -0.6
498,131 - CCNA_00482 0.43 +1.2
498,131 - CCNA_00482 0.43 -0.9
498,136 + CCNA_00482 0.43 -1.5
498,194 + CCNA_00482 0.48 -1.7
498,194 + CCNA_00482 0.48 +0.6
498,204 + CCNA_00482 0.49 -1.6
498,215 + CCNA_00482 0.50 -1.7
498,215 + CCNA_00482 0.50 -0.9
498,215 + CCNA_00482 0.50 -0.1
498,215 + CCNA_00482 0.50 -0.3
498,215 + CCNA_00482 0.50 -0.0
498,215 + CCNA_00482 0.50 -1.1
498,215 + CCNA_00482 0.50 +1.5
498,223 - CCNA_00482 0.50 -3.4
498,223 - CCNA_00482 0.50 -0.3
498,223 - CCNA_00482 0.50 -0.1
498,223 - CCNA_00482 0.50 -0.6
498,223 - CCNA_00482 0.50 -2.2
498,223 - CCNA_00482 0.50 -0.3
498,223 - CCNA_00482 0.50 -2.0
498,223 - CCNA_00482 0.50 +1.4
498,223 - CCNA_00482 0.50 -0.8
498,223 - CCNA_00482 0.50 -1.0
498,223 - CCNA_00482 0.50 -0.4
498,223 - CCNA_00482 0.50 -0.4
498,230 + CCNA_00482 0.51 +0.1
498,238 - CCNA_00482 0.51 +3.1
498,245 + CCNA_00482 0.52 +0.2
498,298 - CCNA_00482 0.56 -0.4
498,328 + CCNA_00482 0.58 -0.8
498,369 - CCNA_00482 0.62 -0.3
498,389 + CCNA_00482 0.63 +0.6
498,389 + CCNA_00482 0.63 -0.5
498,389 + CCNA_00482 0.63 -0.8
498,389 + CCNA_00482 0.63 -0.2
498,390 + CCNA_00482 0.63 +0.5
498,390 + CCNA_00482 0.63 -0.5
498,394 + CCNA_00482 0.64 -0.4
498,397 - +1.7
498,397 - CCNA_00482 0.64 +0.1
498,397 - CCNA_00482 0.64 +0.4
498,498 + CCNA_00482 0.72 -1.6
498,498 + CCNA_00482 0.72 -0.1
498,501 + CCNA_00482 0.72 +0.3
498,507 - CCNA_00482 0.73 -0.1
498,518 - CCNA_00482 0.73 +0.2
498,545 + CCNA_00482 0.76 -1.2
498,550 + CCNA_00482 0.76 +0.7
498,550 + CCNA_00482 0.76 -1.8
498,550 + CCNA_00482 0.76 -0.0
498,558 + CCNA_00482 0.77 -0.4
498,558 - CCNA_00482 0.77 +1.1
498,558 - CCNA_00482 0.77 -0.8
498,567 + CCNA_00482 0.77 -0.7

Or see this region's nucleotide sequence