Experiment: PYE with Paraquat dichloride 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00475 and CCNA_00476 overlap by 4 nucleotides CCNA_00476 and CCNA_00477 are separated by 380 nucleotides CCNA_00477 and CCNA_00478 are separated by 121 nucleotides
CCNA_00475: CCNA_00475 - bacterial conjugation protein, ATP binding domain trwB, at 491,512 to 493,329
_00475
CCNA_00476: CCNA_00476 - hypothetical protein, at 493,326 to 493,709
_00476
CCNA_00477: CCNA_00477 - excisionase, at 494,090 to 494,284
_00477
CCNA_00478: CCNA_00478 - hypothetical protein, at 494,406 to 495,143
_00478
Position (kb) 493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 492.350 kb on - strand, within CCNA_00475 at 492.379 kb on + strand, within CCNA_00475 at 492.380 kb on + strand, within CCNA_00475 at 492.388 kb on - strand, within CCNA_00475 at 492.388 kb on - strand, within CCNA_00475 at 492.406 kb on + strand, within CCNA_00475 at 492.423 kb on + strand, within CCNA_00475 at 492.423 kb on + strand, within CCNA_00475 at 492.423 kb on + strand, within CCNA_00475 at 492.423 kb on + strand, within CCNA_00475 at 492.425 kb on + strand, within CCNA_00475 at 492.425 kb on + strand, within CCNA_00475 at 492.425 kb on + strand, within CCNA_00475 at 492.431 kb on - strand, within CCNA_00475 at 492.431 kb on - strand, within CCNA_00475 at 492.431 kb on - strand, within CCNA_00475 at 492.433 kb on - strand, within CCNA_00475 at 492.433 kb on - strand, within CCNA_00475 at 492.457 kb on + strand, within CCNA_00475 at 492.480 kb on + strand, within CCNA_00475 at 492.505 kb on - strand, within CCNA_00475 at 492.513 kb on + strand, within CCNA_00475 at 492.545 kb on - strand, within CCNA_00475 at 492.579 kb on + strand, within CCNA_00475 at 492.639 kb on + strand, within CCNA_00475 at 492.639 kb on + strand, within CCNA_00475 at 492.657 kb on - strand, within CCNA_00475 at 492.659 kb on + strand, within CCNA_00475 at 492.750 kb on - strand, within CCNA_00475 at 492.761 kb on + strand, within CCNA_00475 at 492.761 kb on + strand, within CCNA_00475 at 492.769 kb on - strand, within CCNA_00475 at 492.769 kb on - strand, within CCNA_00475 at 492.769 kb on - strand, within CCNA_00475 at 492.792 kb on - strand, within CCNA_00475 at 492.809 kb on + strand, within CCNA_00475 at 492.814 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.827 kb on - strand, within CCNA_00475 at 492.827 kb on - strand, within CCNA_00475 at 492.827 kb on - strand, within CCNA_00475 at 492.827 kb on - strand, within CCNA_00475 at 492.827 kb on - strand, within CCNA_00475 at 492.858 kb on + strand, within CCNA_00475 at 492.899 kb on + strand, within CCNA_00475 at 492.904 kb on + strand, within CCNA_00475 at 492.904 kb on + strand, within CCNA_00475 at 492.907 kb on - strand, within CCNA_00475 at 492.923 kb on + strand, within CCNA_00475 at 492.924 kb on - strand, within CCNA_00475 at 492.938 kb on + strand, within CCNA_00475 at 492.938 kb on + strand, within CCNA_00475 at 492.946 kb on - strand, within CCNA_00475 at 492.946 kb on - strand, within CCNA_00475 at 492.950 kb on + strand, within CCNA_00475 at 492.951 kb on - strand, within CCNA_00475 at 492.958 kb on - strand, within CCNA_00475 at 492.960 kb on + strand, within CCNA_00475 at 492.968 kb on - strand, within CCNA_00475 at 492.982 kb on + strand, within CCNA_00475 at 493.004 kb on - strand, within CCNA_00475 at 493.032 kb on + strand, within CCNA_00475 at 493.061 kb on - strand, within CCNA_00475 at 493.071 kb on + strand, within CCNA_00475 at 493.071 kb on + strand, within CCNA_00475 at 493.071 kb on + strand, within CCNA_00475 at 493.071 kb on + strand, within CCNA_00475 at 493.076 kb on + strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.084 kb on - strand, within CCNA_00475 at 493.120 kb on + strand, within CCNA_00475 at 493.138 kb on - strand, within CCNA_00475 at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.159 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.181 kb on - strand at 493.191 kb on + strand at 493.199 kb on - strand at 493.270 kb on + strand at 493.270 kb on + strand at 493.270 kb on + strand at 493.270 kb on + strand at 493.278 kb on - strand at 493.278 kb on - strand at 493.314 kb on + strand at 493.335 kb on - strand at 493.400 kb on - strand, within CCNA_00476 at 493.400 kb on - strand, within CCNA_00476 at 493.427 kb on - strand, within CCNA_00476 at 493.432 kb on - strand, within CCNA_00476 at 493.437 kb on - strand, within CCNA_00476 at 493.439 kb on + strand, within CCNA_00476 at 493.446 kb on + strand, within CCNA_00476 at 493.446 kb on + strand, within CCNA_00476 at 493.446 kb on + strand, within CCNA_00476 at 493.446 kb on + strand, within CCNA_00476 at 493.446 kb on + strand, within CCNA_00476 at 493.446 kb on + strand, within CCNA_00476 at 493.454 kb on - strand, within CCNA_00476 at 493.454 kb on - strand, within CCNA_00476 at 493.517 kb on - strand, within CCNA_00476 at 493.520 kb on + strand, within CCNA_00476 at 493.530 kb on + strand, within CCNA_00476 at 493.630 kb on - strand, within CCNA_00476 at 493.639 kb on + strand, within CCNA_00476 at 493.639 kb on + strand, within CCNA_00476 at 493.647 kb on - strand, within CCNA_00476 at 493.734 kb on - strand at 493.782 kb on + strand at 493.790 kb on + strand at 493.798 kb on - strand at 493.798 kb on - strand at 493.811 kb on + strand at 493.819 kb on - strand at 493.820 kb on + strand at 493.835 kb on + strand at 493.848 kb on + strand at 493.848 kb on + strand at 493.848 kb on + strand at 493.852 kb on + strand at 493.856 kb on - strand at 493.858 kb on + strand at 493.866 kb on - strand at 493.945 kb on - strand at 493.945 kb on - strand at 493.945 kb on - strand at 493.945 kb on - strand at 493.951 kb on + strand at 493.951 kb on + strand at 493.959 kb on - strand at 493.959 kb on - strand at 493.968 kb on - strand at 493.968 kb on - strand at 493.995 kb on + strand at 493.995 kb on + strand at 493.995 kb on + strand at 493.995 kb on + strand at 493.995 kb on + strand at 494.000 kb on + strand at 494.000 kb on + strand at 494.003 kb on - strand at 494.003 kb on - strand at 494.003 kb on - strand at 494.003 kb on - strand at 494.003 kb on - strand at 494.003 kb on - strand at 494.062 kb on - strand at 494.093 kb on + strand at 494.131 kb on - strand, within CCNA_00477 at 494.135 kb on + strand, within CCNA_00477 at 494.154 kb on + strand, within CCNA_00477 at 494.181 kb on + strand, within CCNA_00477 at 494.181 kb on + strand, within CCNA_00477 at 494.181 kb on + strand, within CCNA_00477 at 494.181 kb on + strand, within CCNA_00477 at 494.181 kb on + strand, within CCNA_00477 at 494.181 kb on + strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.199 kb on - strand, within CCNA_00477 at 494.199 kb on - strand, within CCNA_00477 at 494.223 kb on + strand, within CCNA_00477 at 494.226 kb on + strand, within CCNA_00477 at 494.231 kb on - strand, within CCNA_00477 at 494.236 kb on + strand, within CCNA_00477 at 494.243 kb on + strand, within CCNA_00477 at 494.243 kb on + strand, within CCNA_00477 at 494.243 kb on + strand, within CCNA_00477 at 494.243 kb on + strand, within CCNA_00477 at 494.251 kb on - strand, within CCNA_00477 at 494.251 kb on - strand, within CCNA_00477 at 494.253 kb on + strand, within CCNA_00477 at 494.263 kb on + strand, within CCNA_00477 at 494.284 kb on + strand at 494.287 kb on + strand at 494.292 kb on + strand at 494.292 kb on + strand at 494.292 kb on + strand at 494.295 kb on - strand at 494.295 kb on - strand at 494.295 kb on - strand at 494.300 kb on - strand at 494.300 kb on - strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.321 kb on - strand at 494.321 kb on - strand at 494.326 kb on - strand at 494.343 kb on - strand at 494.371 kb on + strand at 494.379 kb on - strand at 494.411 kb on - strand at 494.411 kb on - strand at 494.411 kb on - strand at 494.411 kb on - strand at 494.428 kb on + strand at 494.428 kb on + strand at 494.436 kb on - strand at 494.436 kb on - strand at 494.454 kb on + strand at 494.469 kb on - strand at 494.512 kb on - strand, within CCNA_00478 at 494.567 kb on - strand, within CCNA_00478 at 494.572 kb on + strand, within CCNA_00478 at 494.573 kb on + strand, within CCNA_00478 at 494.594 kb on + strand, within CCNA_00478 at 494.602 kb on - strand, within CCNA_00478 at 494.602 kb on - strand, within CCNA_00478 at 494.603 kb on - strand, within CCNA_00478 at 494.603 kb on - strand, within CCNA_00478 at 494.613 kb on - strand, within CCNA_00478 at 494.631 kb on + strand, within CCNA_00478
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml remove 492,350 - CCNA_00475 0.46 +0.3 492,379 + CCNA_00475 0.48 -0.8 492,380 + CCNA_00475 0.48 -0.7 492,388 - CCNA_00475 0.48 -1.0 492,388 - CCNA_00475 0.48 -0.4 492,406 + CCNA_00475 0.49 +0.4 492,423 + CCNA_00475 0.50 -1.4 492,423 + CCNA_00475 0.50 -0.1 492,423 + CCNA_00475 0.50 -1.8 492,423 + CCNA_00475 0.50 -2.1 492,425 + CCNA_00475 0.50 -2.2 492,425 + CCNA_00475 0.50 +0.1 492,425 + CCNA_00475 0.50 -2.0 492,431 - CCNA_00475 0.51 -1.8 492,431 - CCNA_00475 0.51 -1.5 492,431 - CCNA_00475 0.51 +1.0 492,433 - CCNA_00475 0.51 +0.1 492,433 - CCNA_00475 0.51 -0.1 492,457 + CCNA_00475 0.52 -2.8 492,480 + CCNA_00475 0.53 -0.3 492,505 - CCNA_00475 0.55 +0.1 492,513 + CCNA_00475 0.55 -2.3 492,545 - CCNA_00475 0.57 -1.4 492,579 + CCNA_00475 0.59 +2.1 492,639 + CCNA_00475 0.62 +0.2 492,639 + CCNA_00475 0.62 -1.1 492,657 - CCNA_00475 0.63 +1.1 492,659 + CCNA_00475 0.63 -2.7 492,750 - CCNA_00475 0.68 -1.0 492,761 + CCNA_00475 0.69 -1.7 492,761 + CCNA_00475 0.69 -0.6 492,769 - CCNA_00475 0.69 -0.3 492,769 - CCNA_00475 0.69 +0.9 492,769 - CCNA_00475 0.69 -2.1 492,792 - CCNA_00475 0.70 +0.2 492,809 + CCNA_00475 0.71 -1.8 492,814 + CCNA_00475 0.72 +1.3 492,819 + CCNA_00475 0.72 -1.6 492,819 + CCNA_00475 0.72 -0.3 492,819 + CCNA_00475 0.72 -0.7 492,819 + CCNA_00475 0.72 -2.3 492,819 + CCNA_00475 0.72 -1.0 492,819 + CCNA_00475 0.72 -0.2 492,827 - CCNA_00475 0.72 -0.0 492,827 - CCNA_00475 0.72 -1.7 492,827 - CCNA_00475 0.72 +3.4 492,827 - CCNA_00475 0.72 -1.4 492,827 - CCNA_00475 0.72 -0.2 492,858 + CCNA_00475 0.74 +1.1 492,899 + CCNA_00475 0.76 -1.0 492,904 + CCNA_00475 0.77 -1.1 492,904 + CCNA_00475 0.77 +0.3 492,907 - CCNA_00475 0.77 +0.2 492,923 + CCNA_00475 0.78 +1.1 492,924 - CCNA_00475 0.78 -0.5 492,938 + CCNA_00475 0.78 -1.2 492,938 + CCNA_00475 0.78 -0.7 492,946 - CCNA_00475 0.79 -0.5 492,946 - CCNA_00475 0.79 -1.9 492,950 + CCNA_00475 0.79 +0.6 492,951 - CCNA_00475 0.79 -1.0 492,958 - CCNA_00475 0.80 -1.0 492,960 + CCNA_00475 0.80 +0.7 492,968 - CCNA_00475 0.80 -0.7 492,982 + CCNA_00475 0.81 +1.0 493,004 - CCNA_00475 0.82 +1.5 493,032 + CCNA_00475 0.84 -1.7 493,061 - CCNA_00475 0.85 -2.1 493,071 + CCNA_00475 0.86 +0.5 493,071 + CCNA_00475 0.86 -0.9 493,071 + CCNA_00475 0.86 -1.8 493,071 + CCNA_00475 0.86 +1.6 493,076 + CCNA_00475 0.86 +1.7 493,079 - CCNA_00475 0.86 -1.4 493,079 - CCNA_00475 0.86 +0.7 493,079 - CCNA_00475 0.86 +0.4 493,079 - CCNA_00475 0.86 +1.8 493,079 - CCNA_00475 0.86 -2.7 493,079 - CCNA_00475 0.86 +0.4 493,079 - CCNA_00475 0.86 -1.9 493,079 - CCNA_00475 0.86 -1.1 493,084 - CCNA_00475 0.86 -1.8 493,120 + CCNA_00475 0.88 +1.8 493,138 - CCNA_00475 0.89 +0.5 493,156 + -0.8 493,156 + -1.0 493,156 + +1.3 493,156 + +0.7 493,156 + -0.8 493,156 + -0.3 493,156 + -0.9 493,156 + -1.2 493,156 + -0.5 493,156 + -0.4 493,156 + -0.2 493,156 + +1.6 493,156 + -0.5 493,156 + -1.1 493,156 + +0.1 493,156 + +0.7 493,156 + +0.1 493,156 + -0.9 493,156 + +0.7 493,156 + -0.7 493,159 - +1.1 493,164 - -1.1 493,164 - -0.3 493,164 - +0.7 493,164 - -2.1 493,164 - -1.2 493,164 - -0.7 493,164 - -0.5 493,164 - -1.0 493,164 - -1.0 493,164 - -1.0 493,164 - +0.9 493,164 - +0.1 493,164 - +0.5 493,164 - +0.1 493,164 - -0.9 493,181 - +0.1 493,191 + -1.5 493,199 - -0.1 493,270 + +1.7 493,270 + -1.1 493,270 + -1.4 493,270 + -0.1 493,278 - -1.5 493,278 - +1.3 493,314 + +0.2 493,335 - -1.6 493,400 - CCNA_00476 0.19 -0.7 493,400 - CCNA_00476 0.19 +0.9 493,427 - CCNA_00476 0.26 -0.9 493,432 - CCNA_00476 0.28 -0.7 493,437 - CCNA_00476 0.29 -1.5 493,439 + CCNA_00476 0.29 -2.0 493,446 + CCNA_00476 0.31 -1.5 493,446 + CCNA_00476 0.31 +0.2 493,446 + CCNA_00476 0.31 -1.5 493,446 + CCNA_00476 0.31 -1.0 493,446 + CCNA_00476 0.31 +1.7 493,446 + CCNA_00476 0.31 -1.2 493,454 - CCNA_00476 0.33 -0.2 493,454 - CCNA_00476 0.33 +1.1 493,517 - CCNA_00476 0.50 +0.3 493,520 + CCNA_00476 0.51 -0.9 493,530 + CCNA_00476 0.53 -1.2 493,630 - CCNA_00476 0.79 +0.6 493,639 + CCNA_00476 0.82 -1.5 493,639 + CCNA_00476 0.82 -2.1 493,647 - CCNA_00476 0.84 +0.4 493,734 - +0.4 493,782 + +0.9 493,790 + -0.3 493,798 - -0.2 493,798 - +1.1 493,811 + -0.8 493,819 - +0.4 493,820 + -0.6 493,835 + -1.1 493,848 + +0.1 493,848 + -0.4 493,848 + -0.4 493,852 + -0.9 493,856 - +0.6 493,858 + -0.0 493,866 - +0.1 493,945 - +1.1 493,945 - +0.8 493,945 - +2.1 493,945 - +1.6 493,951 + -2.3 493,951 + +2.1 493,959 - -1.5 493,959 - +1.4 493,968 - -1.2 493,968 - -0.6 493,995 + +0.5 493,995 + -2.0 493,995 + -1.0 493,995 + +0.1 493,995 + -1.7 494,000 + +1.5 494,000 + -1.7 494,003 - -1.5 494,003 - +0.4 494,003 - +0.2 494,003 - -1.0 494,003 - -1.4 494,003 - -1.0 494,062 - -1.1 494,093 + -0.3 494,131 - CCNA_00477 0.21 -2.4 494,135 + CCNA_00477 0.23 -0.9 494,154 + CCNA_00477 0.33 -1.6 494,181 + CCNA_00477 0.47 -0.5 494,181 + CCNA_00477 0.47 -0.7 494,181 + CCNA_00477 0.47 -1.1 494,181 + CCNA_00477 0.47 +1.2 494,181 + CCNA_00477 0.47 -1.4 494,181 + CCNA_00477 0.47 -0.8 494,189 - CCNA_00477 0.51 -0.5 494,189 - CCNA_00477 0.51 -0.8 494,189 - CCNA_00477 0.51 +0.9 494,189 - CCNA_00477 0.51 +0.2 494,189 - CCNA_00477 0.51 +1.0 494,189 - CCNA_00477 0.51 -0.6 494,189 - CCNA_00477 0.51 -0.6 494,189 - CCNA_00477 0.51 -2.3 494,189 - CCNA_00477 0.51 -1.9 494,189 - CCNA_00477 0.51 -0.1 494,189 - CCNA_00477 0.51 -1.3 494,189 - CCNA_00477 0.51 +0.8 494,189 - CCNA_00477 0.51 -1.9 494,189 - CCNA_00477 0.51 +0.4 494,199 - CCNA_00477 0.56 -0.0 494,199 - CCNA_00477 0.56 +0.5 494,223 + CCNA_00477 0.68 -1.5 494,226 + CCNA_00477 0.70 -1.0 494,231 - CCNA_00477 0.72 -2.6 494,236 + CCNA_00477 0.75 -2.5 494,243 + CCNA_00477 0.78 -0.6 494,243 + CCNA_00477 0.78 -1.5 494,243 + CCNA_00477 0.78 -1.8 494,243 + CCNA_00477 0.78 -0.6 494,251 - CCNA_00477 0.83 -1.3 494,251 - CCNA_00477 0.83 -0.1 494,253 + CCNA_00477 0.84 -0.3 494,263 + CCNA_00477 0.89 +0.6 494,284 + -0.1 494,287 + -1.2 494,292 + -2.3 494,292 + +1.4 494,292 + +0.5 494,295 - -0.5 494,295 - +0.4 494,295 - +1.6 494,300 - +0.9 494,300 - -0.2 494,313 + +0.2 494,313 + -1.4 494,313 + -0.7 494,313 + +1.4 494,321 - -0.6 494,321 - -1.1 494,326 - +1.4 494,343 - +0.2 494,371 + -0.6 494,379 - -0.0 494,411 - -3.2 494,411 - -1.3 494,411 - +0.2 494,411 - -0.4 494,428 + +2.1 494,428 + -0.8 494,436 - -1.1 494,436 - -0.7 494,454 + +1.7 494,469 - +0.2 494,512 - CCNA_00478 0.14 -0.9 494,567 - CCNA_00478 0.22 +0.7 494,572 + CCNA_00478 0.22 +0.4 494,573 + CCNA_00478 0.23 -0.2 494,594 + CCNA_00478 0.25 +0.0 494,602 - CCNA_00478 0.27 +1.1 494,602 - CCNA_00478 0.27 -1.5 494,603 - CCNA_00478 0.27 -1.5 494,603 - CCNA_00478 0.27 +0.1 494,613 - CCNA_00478 0.28 -0.8 494,631 + CCNA_00478 0.30 -1.2
Or see this region's nucleotide sequence