Experiment: PYE with Paraquat dichloride 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00388 and CCNA_00389 are separated by 97 nucleotides CCNA_00389 and CCNA_00390 are separated by 103 nucleotides
CCNA_00388: CCNA_00388 - esterase lipase Family protein, at 404,125 to 405,006
_00388
CCNA_00389: CCNA_00389 - aminomethyltransferase family protein, at 405,104 to 405,895
_00389
CCNA_00390: CCNA_00390 - ADP-heptose--LPS heptosyltransferase, at 405,999 to 407,213
_00390
Position (kb) 405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 404.125 kb on - strand at 404.148 kb on - strand at 404.193 kb on - strand at 404.199 kb on + strand at 404.214 kb on + strand, within CCNA_00388 at 404.222 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.247 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.305 kb on - strand, within CCNA_00388 at 404.318 kb on + strand, within CCNA_00388 at 404.346 kb on + strand, within CCNA_00388 at 404.349 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.407 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.416 kb on - strand, within CCNA_00388 at 404.435 kb on - strand, within CCNA_00388 at 404.436 kb on - strand, within CCNA_00388 at 404.438 kb on + strand, within CCNA_00388 at 404.446 kb on - strand, within CCNA_00388 at 404.455 kb on - strand, within CCNA_00388 at 404.482 kb on - strand, within CCNA_00388 at 404.564 kb on + strand, within CCNA_00388 at 404.608 kb on - strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.640 kb on + strand, within CCNA_00388 at 404.640 kb on + strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.671 kb on + strand, within CCNA_00388 at 404.674 kb on + strand, within CCNA_00388 at 404.679 kb on - strand, within CCNA_00388 at 404.679 kb on - strand, within CCNA_00388 at 404.696 kb on - strand, within CCNA_00388 at 404.697 kb on - strand, within CCNA_00388 at 404.697 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.714 kb on - strand, within CCNA_00388 at 404.722 kb on + strand, within CCNA_00388 at 404.728 kb on + strand, within CCNA_00388 at 404.733 kb on + strand, within CCNA_00388 at 404.752 kb on - strand, within CCNA_00388 at 404.785 kb on - strand, within CCNA_00388 at 404.812 kb on + strand, within CCNA_00388 at 404.858 kb on + strand, within CCNA_00388 at 404.907 kb on + strand, within CCNA_00388 at 404.912 kb on + strand, within CCNA_00388 at 404.936 kb on + strand at 404.943 kb on - strand at 404.953 kb on - strand at 404.968 kb on - strand at 405.103 kb on - strand at 405.119 kb on - strand at 405.313 kb on - strand, within CCNA_00389 at 405.428 kb on + strand, within CCNA_00389 at 405.452 kb on + strand, within CCNA_00389 at 405.516 kb on - strand, within CCNA_00389 at 405.724 kb on + strand, within CCNA_00389 at 405.941 kb on - strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.999 kb on + strand at 406.009 kb on + strand at 406.009 kb on + strand at 406.107 kb on + strand at 406.185 kb on - strand, within CCNA_00390 at 406.190 kb on + strand, within CCNA_00390 at 406.190 kb on + strand, within CCNA_00390 at 406.190 kb on + strand, within CCNA_00390 at 406.196 kb on + strand, within CCNA_00390 at 406.210 kb on + strand, within CCNA_00390 at 406.210 kb on + strand, within CCNA_00390 at 406.335 kb on + strand, within CCNA_00390 at 406.347 kb on + strand, within CCNA_00390 at 406.373 kb on + strand, within CCNA_00390 at 406.419 kb on + strand, within CCNA_00390 at 406.419 kb on + strand, within CCNA_00390 at 406.451 kb on + strand, within CCNA_00390 at 406.459 kb on - strand, within CCNA_00390 at 406.559 kb on + strand, within CCNA_00390 at 406.614 kb on - strand, within CCNA_00390 at 406.671 kb on - strand, within CCNA_00390 at 406.698 kb on + strand, within CCNA_00390 at 406.698 kb on + strand, within CCNA_00390 at 406.706 kb on - strand, within CCNA_00390 at 406.727 kb on + strand, within CCNA_00390 at 406.816 kb on + strand, within CCNA_00390 at 406.840 kb on + strand, within CCNA_00390 at 406.855 kb on + strand, within CCNA_00390 at 406.863 kb on - strand, within CCNA_00390
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml remove 404,125 - +1.1 404,148 - +1.9 404,193 - -0.4 404,199 + -1.4 404,214 + CCNA_00388 0.10 +0.2 404,222 - CCNA_00388 0.11 +0.6 404,230 - CCNA_00388 0.12 +0.4 404,230 - CCNA_00388 0.12 +0.7 404,230 - CCNA_00388 0.12 -0.2 404,247 + CCNA_00388 0.14 -2.8 404,290 + CCNA_00388 0.19 -0.0 404,290 + CCNA_00388 0.19 -0.0 404,305 - CCNA_00388 0.20 -1.5 404,318 + CCNA_00388 0.22 -0.5 404,346 + CCNA_00388 0.25 -1.2 404,349 - CCNA_00388 0.25 -1.5 404,374 - CCNA_00388 0.28 -1.1 404,374 - CCNA_00388 0.28 +0.8 404,374 - CCNA_00388 0.28 +0.7 404,407 - CCNA_00388 0.32 +0.5 404,415 - CCNA_00388 0.33 +0.2 404,415 - CCNA_00388 0.33 -2.0 404,416 - CCNA_00388 0.33 -0.8 404,435 - CCNA_00388 0.35 +0.9 404,436 - CCNA_00388 0.35 +2.5 404,438 + CCNA_00388 0.35 +0.8 404,446 - CCNA_00388 0.36 +0.1 404,455 - CCNA_00388 0.37 +1.2 404,482 - CCNA_00388 0.40 +0.3 404,564 + CCNA_00388 0.50 -1.1 404,608 - CCNA_00388 0.55 -0.2 404,619 + CCNA_00388 0.56 -0.3 404,619 + CCNA_00388 0.56 -0.6 404,619 + CCNA_00388 0.56 -0.5 404,619 + CCNA_00388 0.56 -0.5 404,619 + CCNA_00388 0.56 -0.9 404,627 - CCNA_00388 0.57 -0.2 404,627 - CCNA_00388 0.57 +0.6 404,627 - CCNA_00388 0.57 +0.9 404,640 + CCNA_00388 0.58 -1.0 404,640 + CCNA_00388 0.58 -0.2 404,648 - CCNA_00388 0.59 -0.9 404,648 - CCNA_00388 0.59 +2.0 404,648 - CCNA_00388 0.59 -0.4 404,671 + CCNA_00388 0.62 -0.7 404,674 + CCNA_00388 0.62 -0.7 404,679 - CCNA_00388 0.63 -1.4 404,679 - CCNA_00388 0.63 +0.6 404,696 - CCNA_00388 0.65 +0.1 404,697 - CCNA_00388 0.65 +2.0 404,697 - CCNA_00388 0.65 -0.4 404,704 - CCNA_00388 0.66 -0.8 404,704 - CCNA_00388 0.66 -1.3 404,704 - CCNA_00388 0.66 +0.8 404,714 - CCNA_00388 0.67 +0.8 404,722 + CCNA_00388 0.68 +0.2 404,728 + CCNA_00388 0.68 +0.5 404,733 + CCNA_00388 0.69 -1.5 404,752 - CCNA_00388 0.71 -0.2 404,785 - CCNA_00388 0.75 +0.2 404,812 + CCNA_00388 0.78 -0.7 404,858 + CCNA_00388 0.83 -0.5 404,907 + CCNA_00388 0.89 -1.8 404,912 + CCNA_00388 0.89 +1.2 404,936 + -1.2 404,943 - -0.5 404,953 - +0.6 404,968 - -0.6 405,103 - -1.9 405,119 - +1.2 405,313 - CCNA_00389 0.26 +4.9 405,428 + CCNA_00389 0.41 -0.6 405,452 + CCNA_00389 0.44 +2.6 405,516 - CCNA_00389 0.52 +3.9 405,724 + CCNA_00389 0.78 +2.5 405,941 - +1.1 405,983 + -1.9 405,983 + -2.2 405,983 + -3.2 405,983 + -0.4 405,983 + -2.4 405,983 + -0.5 405,983 + +1.3 405,983 + -2.0 405,983 + -0.5 405,983 + +1.9 405,983 + -0.4 405,983 + -0.8 405,983 + -0.5 405,983 + +0.6 405,983 + -1.3 405,983 + -1.7 405,983 + -0.1 405,983 + -1.3 405,983 + -1.0 405,983 + -0.5 405,983 + -0.0 405,983 + -0.3 405,983 + -0.5 405,983 + -0.1 405,983 + +1.3 405,983 + -1.7 405,983 + -0.7 405,983 + +2.1 405,983 + -1.2 405,983 + +1.6 405,983 + -1.8 405,983 + -0.1 405,983 + -1.0 405,991 - -1.3 405,991 - -1.5 405,991 - +1.3 405,991 - -1.3 405,991 - +0.1 405,991 - -0.5 405,991 - +0.2 405,991 - -2.8 405,991 - +2.9 405,991 - -0.3 405,991 - -1.1 405,991 - -0.4 405,991 - -1.3 405,991 - -0.9 405,991 - +0.1 405,991 - -1.0 405,991 - -0.4 405,991 - -0.3 405,991 - -1.4 405,991 - -1.6 405,991 - +0.7 405,991 - -0.4 405,991 - -0.6 405,991 - +1.2 405,991 - -0.4 405,991 - -0.8 405,991 - -0.8 405,991 - +1.0 405,999 + +1.2 406,009 + -1.6 406,009 + -0.6 406,107 + -1.3 406,185 - CCNA_00390 0.15 -2.0 406,190 + CCNA_00390 0.16 -0.8 406,190 + CCNA_00390 0.16 +1.0 406,190 + CCNA_00390 0.16 -0.6 406,196 + CCNA_00390 0.16 -0.9 406,210 + CCNA_00390 0.17 -0.7 406,210 + CCNA_00390 0.17 +1.2 406,335 + CCNA_00390 0.28 +0.5 406,347 + CCNA_00390 0.29 +2.5 406,373 + CCNA_00390 0.31 -1.6 406,419 + CCNA_00390 0.35 -0.8 406,419 + CCNA_00390 0.35 +0.1 406,451 + CCNA_00390 0.37 -2.5 406,459 - CCNA_00390 0.38 -0.5 406,559 + CCNA_00390 0.46 +0.7 406,614 - CCNA_00390 0.51 -1.6 406,671 - CCNA_00390 0.55 +0.5 406,698 + CCNA_00390 0.58 +1.7 406,698 + CCNA_00390 0.58 +0.2 406,706 - CCNA_00390 0.58 -0.0 406,727 + CCNA_00390 0.60 +0.6 406,816 + CCNA_00390 0.67 +0.5 406,840 + CCNA_00390 0.69 +0.1 406,855 + CCNA_00390 0.70 -0.0 406,863 - CCNA_00390 0.71 -0.0
Or see this region's nucleotide sequence