Experiment: PYE with Paraquat dichloride 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00385 and CCNA_00386 overlap by 4 nucleotides CCNA_00386 and CCNA_00387 are separated by 129 nucleotides CCNA_00387 and CCNA_00388 are separated by 127 nucleotides
CCNA_00385: CCNA_00385 - multidrug resistance protein, at 401,527 to 402,861
_00385
CCNA_00386: CCNA_00386 - DNA-3-methyladenine glycosylase, at 402,858 to 403,445
_00386
CCNA_00387: CCNA_00387 - hypothetical protein, at 403,575 to 403,997
_00387
CCNA_00388: CCNA_00388 - esterase lipase Family protein, at 404,125 to 405,006
_00388
Position (kb) 402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 401.862 kb on + strand, within CCNA_00385 at 401.877 kb on - strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.914 kb on - strand, within CCNA_00385 at 401.914 kb on - strand, within CCNA_00385 at 401.916 kb on + strand, within CCNA_00385 at 401.916 kb on + strand, within CCNA_00385 at 401.932 kb on + strand, within CCNA_00385 at 401.947 kb on - strand, within CCNA_00385 at 401.961 kb on + strand, within CCNA_00385 at 401.963 kb on + strand, within CCNA_00385 at 401.963 kb on - strand, within CCNA_00385 at 401.968 kb on + strand at 401.990 kb on - strand, within CCNA_00385 at 402.016 kb on - strand, within CCNA_00385 at 402.048 kb on + strand, within CCNA_00385 at 402.055 kb on + strand, within CCNA_00385 at 402.063 kb on - strand, within CCNA_00385 at 402.063 kb on - strand, within CCNA_00385 at 402.075 kb on - strand, within CCNA_00385 at 402.124 kb on - strand, within CCNA_00385 at 402.131 kb on - strand, within CCNA_00385 at 402.139 kb on + strand, within CCNA_00385 at 402.185 kb on - strand, within CCNA_00385 at 402.194 kb on - strand, within CCNA_00385 at 402.229 kb on - strand, within CCNA_00385 at 402.233 kb on - strand, within CCNA_00385 at 402.246 kb on - strand, within CCNA_00385 at 402.279 kb on - strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand at 402.312 kb on + strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.372 kb on + strand, within CCNA_00385 at 402.372 kb on + strand, within CCNA_00385 at 402.372 kb on + strand, within CCNA_00385 at 402.372 kb on + strand, within CCNA_00385 at 402.372 kb on + strand, within CCNA_00385 at 402.377 kb on + strand, within CCNA_00385 at 402.377 kb on + strand, within CCNA_00385 at 402.380 kb on - strand, within CCNA_00385 at 402.385 kb on - strand, within CCNA_00385 at 402.407 kb on + strand, within CCNA_00385 at 402.415 kb on - strand, within CCNA_00385 at 402.415 kb on - strand, within CCNA_00385 at 402.434 kb on + strand, within CCNA_00385 at 402.437 kb on - strand, within CCNA_00385 at 402.449 kb on - strand, within CCNA_00385 at 402.449 kb on - strand, within CCNA_00385 at 402.462 kb on + strand, within CCNA_00385 at 402.494 kb on - strand, within CCNA_00385 at 402.532 kb on + strand, within CCNA_00385 at 402.532 kb on + strand, within CCNA_00385 at 402.540 kb on - strand at 402.551 kb on + strand, within CCNA_00385 at 402.582 kb on - strand, within CCNA_00385 at 402.588 kb on - strand, within CCNA_00385 at 402.588 kb on - strand, within CCNA_00385 at 402.601 kb on + strand, within CCNA_00385 at 402.716 kb on + strand, within CCNA_00385 at 402.727 kb on + strand, within CCNA_00385 at 402.730 kb on - strand at 402.734 kb on + strand at 402.739 kb on + strand at 402.759 kb on - strand at 402.770 kb on + strand at 402.770 kb on + strand at 402.770 kb on + strand at 402.772 kb on + strand at 402.778 kb on - strand at 402.779 kb on + strand at 402.804 kb on + strand at 402.806 kb on + strand at 402.812 kb on - strand at 402.819 kb on + strand at 402.840 kb on - strand at 402.841 kb on + strand at 402.845 kb on - strand at 402.867 kb on + strand at 402.867 kb on + strand at 402.867 kb on + strand at 402.874 kb on + strand at 402.875 kb on - strand at 402.875 kb on - strand at 402.875 kb on - strand at 402.875 kb on - strand at 402.880 kb on - strand at 402.898 kb on + strand at 402.906 kb on - strand at 402.923 kb on + strand, within CCNA_00386 at 402.931 kb on - strand, within CCNA_00386 at 402.935 kb on + strand, within CCNA_00386 at 402.943 kb on + strand, within CCNA_00386 at 402.956 kb on - strand, within CCNA_00386 at 402.976 kb on + strand, within CCNA_00386 at 402.991 kb on + strand, within CCNA_00386 at 402.991 kb on + strand, within CCNA_00386 at 402.999 kb on - strand, within CCNA_00386 at 402.999 kb on - strand, within CCNA_00386 at 403.000 kb on - strand, within CCNA_00386 at 403.037 kb on - strand, within CCNA_00386 at 403.040 kb on + strand, within CCNA_00386 at 403.070 kb on + strand, within CCNA_00386 at 403.094 kb on - strand, within CCNA_00386 at 403.098 kb on + strand, within CCNA_00386 at 403.118 kb on + strand, within CCNA_00386 at 403.123 kb on + strand, within CCNA_00386 at 403.140 kb on + strand, within CCNA_00386 at 403.177 kb on + strand, within CCNA_00386 at 403.181 kb on - strand, within CCNA_00386 at 403.185 kb on - strand, within CCNA_00386 at 403.185 kb on - strand, within CCNA_00386 at 403.275 kb on - strand, within CCNA_00386 at 403.345 kb on + strand, within CCNA_00386 at 403.348 kb on - strand, within CCNA_00386 at 403.372 kb on - strand, within CCNA_00386 at 403.395 kb on - strand at 403.408 kb on - strand at 403.457 kb on + strand at 403.465 kb on - strand at 403.549 kb on - strand at 403.550 kb on + strand at 403.550 kb on + strand at 403.558 kb on - strand at 403.583 kb on + strand at 403.583 kb on + strand at 403.583 kb on + strand at 403.591 kb on - strand at 403.591 kb on - strand at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.644 kb on + strand, within CCNA_00387 at 403.654 kb on + strand, within CCNA_00387 at 403.657 kb on - strand, within CCNA_00387 at 403.679 kb on + strand, within CCNA_00387 at 403.809 kb on + strand, within CCNA_00387 at 403.827 kb on + strand, within CCNA_00387 at 403.842 kb on + strand, within CCNA_00387 at 403.850 kb on - strand, within CCNA_00387 at 403.866 kb on + strand, within CCNA_00387 at 403.930 kb on + strand, within CCNA_00387 at 403.965 kb on - strand at 403.976 kb on - strand at 403.997 kb on - strand at 404.029 kb on - strand at 404.030 kb on - strand at 404.125 kb on - strand at 404.148 kb on - strand at 404.193 kb on - strand at 404.199 kb on + strand at 404.214 kb on + strand, within CCNA_00388 at 404.222 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.247 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.305 kb on - strand, within CCNA_00388 at 404.318 kb on + strand, within CCNA_00388 at 404.346 kb on + strand, within CCNA_00388 at 404.349 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.407 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.416 kb on - strand, within CCNA_00388 at 404.435 kb on - strand, within CCNA_00388 at 404.436 kb on - strand, within CCNA_00388 at 404.438 kb on + strand, within CCNA_00388
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml remove 401,862 + CCNA_00385 0.25 -1.6 401,877 - CCNA_00385 0.26 -0.8 401,906 + CCNA_00385 0.28 -1.0 401,906 + CCNA_00385 0.28 -1.5 401,906 + CCNA_00385 0.28 -0.9 401,906 + CCNA_00385 0.28 -1.0 401,906 + CCNA_00385 0.28 -3.1 401,906 + CCNA_00385 0.28 -0.4 401,906 + CCNA_00385 0.28 -1.5 401,906 + CCNA_00385 0.28 -2.0 401,906 + CCNA_00385 0.28 -2.8 401,914 - CCNA_00385 0.29 +0.5 401,914 - CCNA_00385 0.29 -1.6 401,916 + CCNA_00385 0.29 -1.3 401,916 + CCNA_00385 0.29 -0.3 401,932 + CCNA_00385 0.30 -0.2 401,947 - CCNA_00385 0.31 +3.5 401,961 + CCNA_00385 0.33 -1.1 401,963 + CCNA_00385 0.33 -0.8 401,963 - CCNA_00385 0.33 +1.0 401,968 + +3.5 401,990 - CCNA_00385 0.35 -1.0 402,016 - CCNA_00385 0.37 -0.6 402,048 + CCNA_00385 0.39 -1.2 402,055 + CCNA_00385 0.40 -1.2 402,063 - CCNA_00385 0.40 -1.5 402,063 - CCNA_00385 0.40 +0.3 402,075 - CCNA_00385 0.41 +0.4 402,124 - CCNA_00385 0.45 -1.9 402,131 - CCNA_00385 0.45 -0.7 402,139 + CCNA_00385 0.46 -1.5 402,185 - CCNA_00385 0.49 +0.7 402,194 - CCNA_00385 0.50 -1.3 402,229 - CCNA_00385 0.53 -2.1 402,233 - CCNA_00385 0.53 +1.0 402,246 - CCNA_00385 0.54 -1.0 402,279 - CCNA_00385 0.56 +0.5 402,284 + CCNA_00385 0.57 +0.3 402,284 + CCNA_00385 0.57 +0.8 402,284 + CCNA_00385 0.57 +0.4 402,284 + CCNA_00385 0.57 -0.0 402,284 + CCNA_00385 0.57 -1.4 402,284 + CCNA_00385 0.57 -0.1 402,284 + CCNA_00385 0.57 -0.6 402,292 - CCNA_00385 0.57 -1.8 402,292 - CCNA_00385 0.57 -0.4 402,292 - CCNA_00385 0.57 -0.6 402,292 - CCNA_00385 0.57 +1.3 402,292 - CCNA_00385 0.57 -0.8 402,292 - CCNA_00385 0.57 -0.4 402,312 + CCNA_00385 0.59 +0.2 402,312 + CCNA_00385 0.59 -1.0 402,312 + CCNA_00385 0.59 -0.6 402,312 + CCNA_00385 0.59 -1.2 402,312 + CCNA_00385 0.59 -2.3 402,312 + +2.0 402,312 + CCNA_00385 0.59 -1.7 402,320 - CCNA_00385 0.59 -0.6 402,320 - CCNA_00385 0.59 +0.0 402,320 - CCNA_00385 0.59 -0.9 402,320 - CCNA_00385 0.59 -0.4 402,320 - CCNA_00385 0.59 -0.6 402,320 - CCNA_00385 0.59 +0.7 402,372 + CCNA_00385 0.63 -2.4 402,372 + CCNA_00385 0.63 -0.0 402,372 + CCNA_00385 0.63 +1.5 402,372 + CCNA_00385 0.63 -0.3 402,372 + CCNA_00385 0.63 -3.0 402,377 + CCNA_00385 0.64 -2.9 402,377 + CCNA_00385 0.64 -2.0 402,380 - CCNA_00385 0.64 -0.0 402,385 - CCNA_00385 0.64 +1.2 402,407 + CCNA_00385 0.66 -1.1 402,415 - CCNA_00385 0.67 -1.8 402,415 - CCNA_00385 0.67 -2.0 402,434 + CCNA_00385 0.68 +0.6 402,437 - CCNA_00385 0.68 -0.2 402,449 - CCNA_00385 0.69 -0.4 402,449 - CCNA_00385 0.69 +1.4 402,462 + CCNA_00385 0.70 -1.6 402,494 - CCNA_00385 0.72 -0.8 402,532 + CCNA_00385 0.75 -0.3 402,532 + CCNA_00385 0.75 +0.7 402,540 - +2.5 402,551 + CCNA_00385 0.77 +0.3 402,582 - CCNA_00385 0.79 -2.2 402,588 - CCNA_00385 0.79 -0.3 402,588 - CCNA_00385 0.79 +0.5 402,601 + CCNA_00385 0.80 -0.2 402,716 + CCNA_00385 0.89 -1.7 402,727 + CCNA_00385 0.90 -0.9 402,730 - -0.5 402,734 + -0.7 402,739 + -1.7 402,759 - -1.4 402,770 + +0.1 402,770 + +0.5 402,770 + +1.3 402,772 + -1.0 402,778 - -0.6 402,779 + -0.6 402,804 + -1.3 402,806 + -1.3 402,812 - -0.2 402,819 + -3.1 402,840 - -0.4 402,841 + -1.9 402,845 - -1.2 402,867 + -1.0 402,867 + -0.7 402,867 + -1.5 402,874 + -0.5 402,875 - +1.0 402,875 - -1.0 402,875 - +1.0 402,875 - -0.4 402,880 - +1.0 402,898 + +0.5 402,906 - -0.9 402,923 + CCNA_00386 0.11 +0.7 402,931 - CCNA_00386 0.12 -0.9 402,935 + CCNA_00386 0.13 +0.2 402,943 + CCNA_00386 0.14 -0.2 402,956 - CCNA_00386 0.17 -1.9 402,976 + CCNA_00386 0.20 +0.2 402,991 + CCNA_00386 0.23 -1.3 402,991 + CCNA_00386 0.23 +0.2 402,999 - CCNA_00386 0.24 +1.4 402,999 - CCNA_00386 0.24 -0.1 403,000 - CCNA_00386 0.24 -1.1 403,037 - CCNA_00386 0.30 +0.2 403,040 + CCNA_00386 0.31 +1.4 403,070 + CCNA_00386 0.36 -0.6 403,094 - CCNA_00386 0.40 -1.6 403,098 + CCNA_00386 0.41 -1.5 403,118 + CCNA_00386 0.44 -1.1 403,123 + CCNA_00386 0.45 -3.6 403,140 + CCNA_00386 0.48 -0.4 403,177 + CCNA_00386 0.54 +0.6 403,181 - CCNA_00386 0.55 -1.0 403,185 - CCNA_00386 0.56 +0.5 403,185 - CCNA_00386 0.56 -0.5 403,275 - CCNA_00386 0.71 +2.4 403,345 + CCNA_00386 0.83 -1.2 403,348 - CCNA_00386 0.83 -2.2 403,372 - CCNA_00386 0.87 +1.2 403,395 - -1.3 403,408 - +0.2 403,457 + -1.2 403,465 - +1.0 403,549 - +1.0 403,550 + -0.3 403,550 + +1.1 403,558 - +0.1 403,583 + -0.0 403,583 + -0.0 403,583 + -1.1 403,591 - +0.7 403,591 - -0.2 403,639 + CCNA_00387 0.15 -0.0 403,639 + CCNA_00387 0.15 -0.5 403,639 + CCNA_00387 0.15 -1.7 403,639 + CCNA_00387 0.15 +0.9 403,639 + CCNA_00387 0.15 +2.5 403,644 + CCNA_00387 0.16 +0.4 403,654 + CCNA_00387 0.19 +0.8 403,657 - CCNA_00387 0.19 -0.4 403,679 + CCNA_00387 0.25 -1.0 403,809 + CCNA_00387 0.55 -0.4 403,827 + CCNA_00387 0.60 -1.2 403,842 + CCNA_00387 0.63 +0.3 403,850 - CCNA_00387 0.65 -2.8 403,866 + CCNA_00387 0.69 -2.2 403,930 + CCNA_00387 0.84 +0.2 403,965 - -0.2 403,976 - -0.1 403,997 - +0.4 404,029 - +2.5 404,030 - +0.8 404,125 - +1.1 404,148 - +1.9 404,193 - -0.4 404,199 + -1.4 404,214 + CCNA_00388 0.10 +0.2 404,222 - CCNA_00388 0.11 +0.6 404,230 - CCNA_00388 0.12 +0.4 404,230 - CCNA_00388 0.12 +0.7 404,230 - CCNA_00388 0.12 -0.2 404,247 + CCNA_00388 0.14 -2.8 404,290 + CCNA_00388 0.19 -0.0 404,290 + CCNA_00388 0.19 -0.0 404,305 - CCNA_00388 0.20 -1.5 404,318 + CCNA_00388 0.22 -0.5 404,346 + CCNA_00388 0.25 -1.2 404,349 - CCNA_00388 0.25 -1.5 404,374 - CCNA_00388 0.28 -1.1 404,374 - CCNA_00388 0.28 +0.8 404,374 - CCNA_00388 0.28 +0.7 404,407 - CCNA_00388 0.32 +0.5 404,415 - CCNA_00388 0.33 +0.2 404,415 - CCNA_00388 0.33 -2.0 404,416 - CCNA_00388 0.33 -0.8 404,435 - CCNA_00388 0.35 +0.9 404,436 - CCNA_00388 0.35 +2.5 404,438 + CCNA_00388 0.35 +0.8
Or see this region's nucleotide sequence