Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00215

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00214 and CCNA_00215 are separated by 306 nucleotidesCCNA_00215 and CCNA_00216 are separated by 67 nucleotidesCCNA_00216 and CCNA_00217 are separated by 114 nucleotides CCNA_00214: CCNA_00214 - TonB-dependent receptor, at 230,262 to 232,307 _00214 CCNA_00215: CCNA_00215 - SapC surface layer protein, at 232,614 to 233,402 _00215 CCNA_00216: CCNA_00216 - hot dog superfamily protein, at 233,470 to 233,862 _00216 CCNA_00217: CCNA_00217 - thiol:disulfide interchange protein DsbD, at 233,977 to 236,127 _00217 Position (kb) 232 233 234Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 231.629 kb on + strand, within CCNA_00214at 231.631 kb on - strand, within CCNA_00214at 231.679 kb on - strand, within CCNA_00214at 231.684 kb on + strand, within CCNA_00214at 231.736 kb on + strand, within CCNA_00214at 231.774 kb on - strand, within CCNA_00214at 231.796 kb on - strand, within CCNA_00214at 231.796 kb on - strand, within CCNA_00214at 231.870 kb on + strand, within CCNA_00214at 231.870 kb on + strand, within CCNA_00214at 231.870 kb on + strand, within CCNA_00214at 231.870 kb on + strand, within CCNA_00214at 231.870 kb on + strand, within CCNA_00214at 231.870 kb on + strand, within CCNA_00214at 231.870 kb on + strand, within CCNA_00214at 231.870 kb on + strand, within CCNA_00214at 231.878 kb on - strand, within CCNA_00214at 231.878 kb on - strand, within CCNA_00214at 231.883 kb on - strand, within CCNA_00214at 231.890 kb on - strand, within CCNA_00214at 231.896 kb on + strand, within CCNA_00214at 231.901 kb on + strand, within CCNA_00214at 231.906 kb on + strand, within CCNA_00214at 231.920 kb on + strand, within CCNA_00214at 231.928 kb on - strand, within CCNA_00214at 231.928 kb on - strand, within CCNA_00214at 231.941 kb on - strand, within CCNA_00214at 231.961 kb on - strand, within CCNA_00214at 231.968 kb on - strand, within CCNA_00214at 231.985 kb on - strand, within CCNA_00214at 231.988 kb on + strand, within CCNA_00214at 231.988 kb on + strand, within CCNA_00214at 231.988 kb on + strand, within CCNA_00214at 231.990 kb on - strand, within CCNA_00214at 231.996 kb on - strand, within CCNA_00214at 231.996 kb on - strand, within CCNA_00214at 231.996 kb on - strand, within CCNA_00214at 231.996 kb on - strand, within CCNA_00214at 231.996 kb on - strand, within CCNA_00214at 231.996 kb on - strand, within CCNA_00214at 232.003 kb on + strand, within CCNA_00214at 232.013 kb on + strand, within CCNA_00214at 232.026 kb on - strand, within CCNA_00214at 232.027 kb on + strand, within CCNA_00214at 232.027 kb on + strand, within CCNA_00214at 232.029 kb on + strand, within CCNA_00214at 232.035 kb on - strand, within CCNA_00214at 232.045 kb on - strand, within CCNA_00214at 232.047 kb on + strand, within CCNA_00214at 232.066 kb on + strand, within CCNA_00214at 232.066 kb on + strand, within CCNA_00214at 232.074 kb on - strand, within CCNA_00214at 232.074 kb on - strand, within CCNA_00214at 232.097 kb on - strand, within CCNA_00214at 232.129 kb on + strandat 232.137 kb on + strandat 232.137 kb on - strandat 232.137 kb on - strandat 232.145 kb on - strandat 232.147 kb on - strandat 232.147 kb on - strandat 232.149 kb on + strandat 232.188 kb on - strandat 232.241 kb on - strandat 232.301 kb on + strandat 232.309 kb on - strandat 232.339 kb on + strandat 232.368 kb on - strandat 232.373 kb on - strandat 232.387 kb on - strandat 232.416 kb on - strandat 232.416 kb on - strandat 232.452 kb on - strandat 232.455 kb on + strandat 232.455 kb on + strandat 232.458 kb on - strandat 232.458 kb on - strandat 232.468 kb on + strandat 232.468 kb on + strandat 232.476 kb on - strandat 232.476 kb on - strandat 232.491 kb on + strandat 232.507 kb on - strandat 232.536 kb on + strandat 232.536 kb on + strandat 232.544 kb on - strandat 232.544 kb on - strandat 232.563 kb on + strandat 232.571 kb on - strandat 232.581 kb on - strandat 232.618 kb on - strandat 232.658 kb on + strandat 232.658 kb on + strandat 232.658 kb on + strandat 232.658 kb on + strandat 232.658 kb on + strandat 232.658 kb on + strandat 232.666 kb on - strandat 232.666 kb on - strandat 232.666 kb on - strandat 232.702 kb on + strand, within CCNA_00215at 232.705 kb on - strand, within CCNA_00215at 232.712 kb on + strand, within CCNA_00215at 232.791 kb on + strand, within CCNA_00215at 232.791 kb on + strand, within CCNA_00215at 232.791 kb on + strandat 232.791 kb on + strand, within CCNA_00215at 232.791 kb on + strand, within CCNA_00215at 232.799 kb on - strand, within CCNA_00215at 232.799 kb on - strand, within CCNA_00215at 232.799 kb on - strand, within CCNA_00215at 232.799 kb on - strand, within CCNA_00215at 232.816 kb on - strand, within CCNA_00215at 232.856 kb on - strand, within CCNA_00215at 232.856 kb on - strand, within CCNA_00215at 232.917 kb on + strand, within CCNA_00215at 232.917 kb on + strand, within CCNA_00215at 232.922 kb on + strand, within CCNA_00215at 232.964 kb on + strand, within CCNA_00215at 233.015 kb on + strand, within CCNA_00215at 233.015 kb on + strand, within CCNA_00215at 233.015 kb on + strand, within CCNA_00215at 233.015 kb on + strand, within CCNA_00215at 233.023 kb on - strand, within CCNA_00215at 233.023 kb on - strand, within CCNA_00215at 233.023 kb on - strand, within CCNA_00215at 233.030 kb on + strand, within CCNA_00215at 233.036 kb on + strand, within CCNA_00215at 233.069 kb on - strand, within CCNA_00215at 233.090 kb on + strand, within CCNA_00215at 233.133 kb on + strand, within CCNA_00215at 233.140 kb on + strand, within CCNA_00215at 233.158 kb on - strand, within CCNA_00215at 233.159 kb on + strand, within CCNA_00215at 233.170 kb on + strand, within CCNA_00215at 233.170 kb on + strand, within CCNA_00215at 233.170 kb on + strand, within CCNA_00215at 233.178 kb on - strand, within CCNA_00215at 233.178 kb on - strand, within CCNA_00215at 233.228 kb on + strand, within CCNA_00215at 233.236 kb on - strand, within CCNA_00215at 233.260 kb on + strand, within CCNA_00215at 233.307 kb on + strand, within CCNA_00215at 233.307 kb on + strand, within CCNA_00215at 233.312 kb on + strand, within CCNA_00215at 233.312 kb on + strand, within CCNA_00215at 233.312 kb on + strand, within CCNA_00215at 233.314 kb on - strand, within CCNA_00215at 233.357 kb on - strandat 233.378 kb on + strandat 233.386 kb on - strandat 233.386 kb on - strandat 233.427 kb on - strandat 233.436 kb on + strandat 233.555 kb on + strand, within CCNA_00216at 233.555 kb on + strand, within CCNA_00216at 233.556 kb on - strand, within CCNA_00216at 233.557 kb on - strand, within CCNA_00216at 233.562 kb on - strand, within CCNA_00216at 233.563 kb on - strand, within CCNA_00216at 233.563 kb on - strand, within CCNA_00216at 233.563 kb on - strand, within CCNA_00216at 233.573 kb on - strand, within CCNA_00216at 233.610 kb on - strand, within CCNA_00216at 233.712 kb on - strand, within CCNA_00216at 233.779 kb on + strand, within CCNA_00216at 233.780 kb on - strand, within CCNA_00216at 233.807 kb on + strand, within CCNA_00216at 233.898 kb on + strandat 233.911 kb on - strandat 233.915 kb on + strandat 233.944 kb on - strandat 233.949 kb on - strandat 233.963 kb on + strandat 233.993 kb on - strandat 234.010 kb on + strandat 234.026 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml
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231,629 + CCNA_00214 0.67 +1.0
231,631 - CCNA_00214 0.67 -1.4
231,679 - CCNA_00214 0.69 -0.0
231,684 + CCNA_00214 0.70 +1.4
231,736 + CCNA_00214 0.72 +2.3
231,774 - CCNA_00214 0.74 +0.8
231,796 - CCNA_00214 0.75 +0.7
231,796 - CCNA_00214 0.75 -1.3
231,870 + CCNA_00214 0.79 -0.1
231,870 + CCNA_00214 0.79 +0.4
231,870 + CCNA_00214 0.79 +1.4
231,870 + CCNA_00214 0.79 +0.4
231,870 + CCNA_00214 0.79 -2.2
231,870 + CCNA_00214 0.79 -1.2
231,870 + CCNA_00214 0.79 -2.4
231,870 + CCNA_00214 0.79 -0.5
231,878 - CCNA_00214 0.79 +0.2
231,878 - CCNA_00214 0.79 -0.5
231,883 - CCNA_00214 0.79 +1.0
231,890 - CCNA_00214 0.80 +0.8
231,896 + CCNA_00214 0.80 -1.5
231,901 + CCNA_00214 0.80 -0.4
231,906 + CCNA_00214 0.80 -1.5
231,920 + CCNA_00214 0.81 +0.2
231,928 - CCNA_00214 0.81 -2.4
231,928 - CCNA_00214 0.81 -0.4
231,941 - CCNA_00214 0.82 -1.6
231,961 - CCNA_00214 0.83 -1.7
231,968 - CCNA_00214 0.83 +0.2
231,985 - CCNA_00214 0.84 -1.6
231,988 + CCNA_00214 0.84 -0.3
231,988 + CCNA_00214 0.84 -1.5
231,988 + CCNA_00214 0.84 +2.0
231,990 - CCNA_00214 0.84 +0.4
231,996 - CCNA_00214 0.85 -0.2
231,996 - CCNA_00214 0.85 -1.6
231,996 - CCNA_00214 0.85 -0.5
231,996 - CCNA_00214 0.85 -1.3
231,996 - CCNA_00214 0.85 -2.0
231,996 - CCNA_00214 0.85 -1.2
232,003 + CCNA_00214 0.85 +0.2
232,013 + CCNA_00214 0.86 -1.4
232,026 - CCNA_00214 0.86 -0.3
232,027 + CCNA_00214 0.86 +0.5
232,027 + CCNA_00214 0.86 +2.7
232,029 + CCNA_00214 0.86 -1.0
232,035 - CCNA_00214 0.87 -2.5
232,045 - CCNA_00214 0.87 +2.7
232,047 + CCNA_00214 0.87 -0.6
232,066 + CCNA_00214 0.88 -1.5
232,066 + CCNA_00214 0.88 +0.7
232,074 - CCNA_00214 0.89 +0.5
232,074 - CCNA_00214 0.89 -0.8
232,097 - CCNA_00214 0.90 -0.9
232,129 + -0.7
232,137 + -0.2
232,137 - +2.8
232,137 - +0.5
232,145 - -1.3
232,147 - -0.2
232,147 - -0.5
232,149 + +0.6
232,188 - -0.5
232,241 - -0.7
232,301 + +1.2
232,309 - -1.0
232,339 + +0.3
232,368 - -0.8
232,373 - -1.0
232,387 - +1.7
232,416 - -1.7
232,416 - -1.7
232,452 - -0.5
232,455 + -0.3
232,455 + -0.6
232,458 - -1.3
232,458 - -1.4
232,468 + +0.7
232,468 + +0.7
232,476 - -1.6
232,476 - -2.3
232,491 + -2.2
232,507 - +0.6
232,536 + +1.3
232,536 + +0.6
232,544 - -0.1
232,544 - -0.3
232,563 + +1.9
232,571 - -0.3
232,581 - +0.7
232,618 - -0.0
232,658 + -1.5
232,658 + +0.7
232,658 + +1.0
232,658 + +0.3
232,658 + -0.2
232,658 + +0.7
232,666 - +0.2
232,666 - +1.5
232,666 - +0.3
232,702 + CCNA_00215 0.11 -0.5
232,705 - CCNA_00215 0.12 -1.3
232,712 + CCNA_00215 0.12 +1.6
232,791 + CCNA_00215 0.22 +2.0
232,791 + CCNA_00215 0.22 +2.1
232,791 + +3.5
232,791 + CCNA_00215 0.22 +1.8
232,791 + CCNA_00215 0.22 +2.2
232,799 - CCNA_00215 0.23 +0.1
232,799 - CCNA_00215 0.23 +2.2
232,799 - CCNA_00215 0.23 +1.7
232,799 - CCNA_00215 0.23 -0.8
232,816 - CCNA_00215 0.26 +0.7
232,856 - CCNA_00215 0.31 -0.7
232,856 - CCNA_00215 0.31 -2.5
232,917 + CCNA_00215 0.38 +2.6
232,917 + CCNA_00215 0.38 +2.4
232,922 + CCNA_00215 0.39 +2.4
232,964 + CCNA_00215 0.44 +2.2
233,015 + CCNA_00215 0.51 +2.0
233,015 + CCNA_00215 0.51 +1.2
233,015 + CCNA_00215 0.51 +2.5
233,015 + CCNA_00215 0.51 +2.6
233,023 - CCNA_00215 0.52 -0.0
233,023 - CCNA_00215 0.52 -0.7
233,023 - CCNA_00215 0.52 +0.2
233,030 + CCNA_00215 0.53 +3.0
233,036 + CCNA_00215 0.53 +2.4
233,069 - CCNA_00215 0.58 +0.8
233,090 + CCNA_00215 0.60 +2.5
233,133 + CCNA_00215 0.66 +3.3
233,140 + CCNA_00215 0.67 +2.7
233,158 - CCNA_00215 0.69 -2.4
233,159 + CCNA_00215 0.69 +2.6
233,170 + CCNA_00215 0.70 +2.4
233,170 + CCNA_00215 0.70 +3.2
233,170 + CCNA_00215 0.70 +2.8
233,178 - CCNA_00215 0.71 -0.5
233,178 - CCNA_00215 0.71 -0.5
233,228 + CCNA_00215 0.78 +2.9
233,236 - CCNA_00215 0.79 -0.7
233,260 + CCNA_00215 0.82 +2.1
233,307 + CCNA_00215 0.88 +3.1
233,307 + CCNA_00215 0.88 +1.8
233,312 + CCNA_00215 0.88 +2.7
233,312 + CCNA_00215 0.88 +2.5
233,312 + CCNA_00215 0.88 +3.0
233,314 - CCNA_00215 0.89 +0.5
233,357 - -1.1
233,378 + +2.1
233,386 - +0.4
233,386 - +0.0
233,427 - -0.5
233,436 + +1.0
233,555 + CCNA_00216 0.22 +0.1
233,555 + CCNA_00216 0.22 -1.8
233,556 - CCNA_00216 0.22 +2.8
233,557 - CCNA_00216 0.22 -0.6
233,562 - CCNA_00216 0.23 +0.7
233,563 - CCNA_00216 0.24 -3.2
233,563 - CCNA_00216 0.24 -1.8
233,563 - CCNA_00216 0.24 -2.8
233,573 - CCNA_00216 0.26 -1.0
233,610 - CCNA_00216 0.36 -1.2
233,712 - CCNA_00216 0.62 +0.0
233,779 + CCNA_00216 0.79 -0.9
233,780 - CCNA_00216 0.79 +1.0
233,807 + CCNA_00216 0.86 -1.1
233,898 + +0.3
233,911 - -0.2
233,915 + +1.3
233,944 - +0.0
233,949 - -2.3
233,963 + +0.0
233,993 - -1.7
234,010 + -2.6
234,026 - +1.1

Or see this region's nucleotide sequence