Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00073

Experiment: PYE with Paraquat dichloride 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00071 and CCNA_00072 are separated by 43 nucleotidesCCNA_00072 and CCNA_00073 overlap by 4 nucleotidesCCNA_00073 and CCNA_R0001 are separated by 41 nucleotidesCCNA_R0001 and CCNA_00074 are separated by 251 nucleotides CCNA_00071: CCNA_00071 - uroporphyrinogen-III synthase, at 72,950 to 73,636 _00071 CCNA_00072: CCNA_00072 - hypothetical protein, at 73,680 to 74,576 _00072 CCNA_00073: CCNA_00073 - HemY domain membrane protein, at 74,573 to 76,108 _00073 CCNA_R0001: CCNA_R0001 - tRNA-Thr, at 76,150 to 76,225 _R0001 CCNA_00074: CCNA_00074 - multifunctional fatty acid oxidation complex subunit alpha FadJ, at 76,477 to 78,678 _00074 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 73.615 kb on + strandat 73.623 kb on - strandat 73.632 kb on - strandat 73.650 kb on - strandat 73.650 kb on - strandat 73.667 kb on - strandat 73.723 kb on + strandat 73.731 kb on + strandat 73.739 kb on - strandat 73.776 kb on + strand, within CCNA_00072at 73.786 kb on + strand, within CCNA_00072at 73.800 kb on + strand, within CCNA_00072at 73.822 kb on + strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.831 kb on - strand, within CCNA_00072at 73.890 kb on - strand, within CCNA_00072at 73.946 kb on + strand, within CCNA_00072at 73.967 kb on - strand, within CCNA_00072at 73.973 kb on + strand, within CCNA_00072at 73.973 kb on + strand, within CCNA_00072at 73.981 kb on - strand, within CCNA_00072at 73.981 kb on - strand, within CCNA_00072at 74.008 kb on + strand, within CCNA_00072at 74.010 kb on + strand, within CCNA_00072at 74.027 kb on + strand, within CCNA_00072at 74.036 kb on - strand, within CCNA_00072at 74.067 kb on + strand, within CCNA_00072at 74.072 kb on + strand, within CCNA_00072at 74.080 kb on - strandat 74.097 kb on - strand, within CCNA_00072at 74.120 kb on - strand, within CCNA_00072at 74.125 kb on + strand, within CCNA_00072at 74.127 kb on - strand, within CCNA_00072at 74.135 kb on + strand, within CCNA_00072at 74.143 kb on + strand, within CCNA_00072at 74.166 kb on - strand, within CCNA_00072at 74.207 kb on - strand, within CCNA_00072at 74.262 kb on - strand, within CCNA_00072at 74.290 kb on + strand, within CCNA_00072at 74.295 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.308 kb on - strand, within CCNA_00072at 74.317 kb on - strand, within CCNA_00072at 74.369 kb on + strand, within CCNA_00072at 74.369 kb on + strand, within CCNA_00072at 74.369 kb on + strand, within CCNA_00072at 74.379 kb on + strand, within CCNA_00072at 74.511 kb on - strandat 74.533 kb on + strandat 74.536 kb on - strandat 74.596 kb on + strandat 74.630 kb on + strandat 74.632 kb on - strandat 74.638 kb on - strandat 74.719 kb on + strandat 74.719 kb on + strandat 74.719 kb on + strandat 74.733 kb on + strand, within CCNA_00073at 74.734 kb on - strand, within CCNA_00073at 74.734 kb on - strand, within CCNA_00073at 74.743 kb on + strand, within CCNA_00073at 74.743 kb on + strand, within CCNA_00073at 74.751 kb on - strand, within CCNA_00073at 74.751 kb on - strand, within CCNA_00073at 74.754 kb on + strand, within CCNA_00073at 74.754 kb on + strand, within CCNA_00073at 74.762 kb on - strand, within CCNA_00073at 74.774 kb on + strand, within CCNA_00073at 74.782 kb on - strand, within CCNA_00073at 74.782 kb on - strand, within CCNA_00073at 74.789 kb on + strand, within CCNA_00073at 74.789 kb on + strand, within CCNA_00073at 74.794 kb on + strand, within CCNA_00073at 74.797 kb on - strand, within CCNA_00073at 74.808 kb on - strand, within CCNA_00073at 74.808 kb on - strand, within CCNA_00073at 74.811 kb on + strand, within CCNA_00073at 74.821 kb on + strand, within CCNA_00073at 74.833 kb on - strand, within CCNA_00073at 74.853 kb on - strand, within CCNA_00073at 74.891 kb on + strand, within CCNA_00073at 74.927 kb on + strand, within CCNA_00073at 74.927 kb on + strand, within CCNA_00073at 74.946 kb on - strand, within CCNA_00073at 74.984 kb on + strand, within CCNA_00073at 74.984 kb on + strand, within CCNA_00073at 75.034 kb on - strand, within CCNA_00073at 75.045 kb on + strand, within CCNA_00073at 75.053 kb on - strand, within CCNA_00073at 75.064 kb on + strand, within CCNA_00073at 75.064 kb on + strand, within CCNA_00073at 75.064 kb on + strand, within CCNA_00073at 75.072 kb on - strand, within CCNA_00073at 75.108 kb on + strand, within CCNA_00073at 75.149 kb on + strand, within CCNA_00073at 75.151 kb on + strand, within CCNA_00073at 75.151 kb on + strand, within CCNA_00073at 75.159 kb on - strand, within CCNA_00073at 75.188 kb on + strand, within CCNA_00073at 75.210 kb on + strand, within CCNA_00073at 75.210 kb on + strand, within CCNA_00073at 75.213 kb on - strand, within CCNA_00073at 75.225 kb on - strand, within CCNA_00073at 75.304 kb on + strand, within CCNA_00073at 75.304 kb on + strand, within CCNA_00073at 75.312 kb on - strand, within CCNA_00073at 75.312 kb on - strand, within CCNA_00073at 75.312 kb on - strand, within CCNA_00073at 75.336 kb on - strand, within CCNA_00073at 75.352 kb on + strand, within CCNA_00073at 75.352 kb on + strand, within CCNA_00073at 75.352 kb on + strand, within CCNA_00073at 75.360 kb on - strand, within CCNA_00073at 75.375 kb on + strand, within CCNA_00073at 75.375 kb on + strand, within CCNA_00073at 75.379 kb on + strand, within CCNA_00073at 75.417 kb on - strand, within CCNA_00073at 75.417 kb on - strand, within CCNA_00073at 75.417 kb on - strand, within CCNA_00073at 75.444 kb on - strand, within CCNA_00073at 75.444 kb on - strand, within CCNA_00073at 75.481 kb on + strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.537 kb on - strand, within CCNA_00073at 75.611 kb on + strand, within CCNA_00073at 75.655 kb on + strand, within CCNA_00073at 75.659 kb on + strand, within CCNA_00073at 75.716 kb on + strand, within CCNA_00073at 75.724 kb on - strand, within CCNA_00073at 75.727 kb on + strand, within CCNA_00073at 75.727 kb on + strand, within CCNA_00073at 75.752 kb on - strand, within CCNA_00073at 75.769 kb on - strand, within CCNA_00073at 75.776 kb on + strand, within CCNA_00073at 75.776 kb on + strand, within CCNA_00073at 75.784 kb on + strand, within CCNA_00073at 75.791 kb on + strand, within CCNA_00073at 75.916 kb on + strand, within CCNA_00073at 75.924 kb on - strand, within CCNA_00073at 75.930 kb on - strand, within CCNA_00073at 75.941 kb on + strand, within CCNA_00073at 75.941 kb on + strand, within CCNA_00073at 75.949 kb on - strand, within CCNA_00073at 75.993 kb on + strandat 76.001 kb on - strandat 76.052 kb on + strandat 76.277 kb on + strandat 76.286 kb on - strandat 76.286 kb on - strandat 76.312 kb on + strandat 76.345 kb on + strandat 76.371 kb on - strandat 76.389 kb on + strandat 76.392 kb on - strandat 76.457 kb on + strandat 76.457 kb on + strandat 76.457 kb on + strandat 76.462 kb on + strandat 76.465 kb on - strandat 76.465 kb on - strandat 76.465 kb on - strandat 76.465 kb on - strandat 76.465 kb on - strandat 76.465 kb on - strandat 76.470 kb on - strandat 76.487 kb on + strandat 76.487 kb on + strandat 76.495 kb on - strandat 76.495 kb on - strandat 76.495 kb on - strandat 76.495 kb on - strandat 76.499 kb on + strandat 76.536 kb on - strandat 76.546 kb on - strandat 76.570 kb on - strandat 76.582 kb on - strandat 76.655 kb on + strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.690 kb on + strandat 76.697 kb on + strandat 76.722 kb on - strand, within CCNA_00074at 76.725 kb on + strand, within CCNA_00074at 76.725 kb on + strand, within CCNA_00074at 76.733 kb on - strand, within CCNA_00074at 76.733 kb on - strand, within CCNA_00074at 76.799 kb on - strand, within CCNA_00074at 76.835 kb on - strand, within CCNA_00074at 76.885 kb on - strand, within CCNA_00074at 76.891 kb on - strand, within CCNA_00074at 76.963 kb on - strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.011 kb on + strandat 77.011 kb on + strand, within CCNA_00074at 77.018 kb on - strand, within CCNA_00074at 77.019 kb on - strand, within CCNA_00074at 77.019 kb on - strand, within CCNA_00074at 77.019 kb on - strand, within CCNA_00074

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.03 mg/ml
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73,615 + +0.5
73,623 - +1.4
73,632 - +0.3
73,650 - -2.6
73,650 - -0.6
73,667 - -0.3
73,723 + +2.0
73,731 + +4.5
73,739 - +1.0
73,776 + CCNA_00072 0.11 +2.2
73,786 + CCNA_00072 0.12 +2.9
73,800 + CCNA_00072 0.13 +2.5
73,822 + CCNA_00072 0.16 +2.7
73,830 - CCNA_00072 0.17 +1.3
73,830 - CCNA_00072 0.17 -0.5
73,830 - CCNA_00072 0.17 +0.8
73,830 - CCNA_00072 0.17 +3.0
73,831 - CCNA_00072 0.17 +2.0
73,890 - CCNA_00072 0.23 +0.8
73,946 + CCNA_00072 0.30 +2.1
73,967 - CCNA_00072 0.32 +0.7
73,973 + CCNA_00072 0.33 +1.1
73,973 + CCNA_00072 0.33 +2.2
73,981 - CCNA_00072 0.34 +2.0
73,981 - CCNA_00072 0.34 -1.3
74,008 + CCNA_00072 0.37 +2.1
74,010 + CCNA_00072 0.37 +3.0
74,027 + CCNA_00072 0.39 +2.6
74,036 - CCNA_00072 0.40 -0.2
74,067 + CCNA_00072 0.43 +2.6
74,072 + CCNA_00072 0.44 +2.0
74,080 - +2.5
74,097 - CCNA_00072 0.46 +1.5
74,120 - CCNA_00072 0.49 +0.3
74,125 + CCNA_00072 0.50 +2.0
74,127 - CCNA_00072 0.50 +1.2
74,135 + CCNA_00072 0.51 +2.7
74,143 + CCNA_00072 0.52 +1.4
74,166 - CCNA_00072 0.54 +0.5
74,207 - CCNA_00072 0.59 +0.3
74,262 - CCNA_00072 0.65 -0.1
74,290 + CCNA_00072 0.68 +2.5
74,295 + CCNA_00072 0.69 +3.4
74,300 + CCNA_00072 0.69 +2.8
74,300 + CCNA_00072 0.69 +3.1
74,300 + CCNA_00072 0.69 +3.7
74,300 + CCNA_00072 0.69 +2.4
74,308 - CCNA_00072 0.70 -0.5
74,317 - CCNA_00072 0.71 +2.0
74,369 + CCNA_00072 0.77 +2.2
74,369 + CCNA_00072 0.77 +2.2
74,369 + CCNA_00072 0.77 +2.0
74,379 + CCNA_00072 0.78 +2.5
74,511 - +0.7
74,533 + +1.7
74,536 - +1.0
74,596 + +1.1
74,630 + +2.3
74,632 - +1.2
74,638 - +1.3
74,719 + +2.7
74,719 + +2.5
74,719 + +3.3
74,733 + CCNA_00073 0.10 +2.1
74,734 - CCNA_00073 0.10 +1.1
74,734 - CCNA_00073 0.10 -0.9
74,743 + CCNA_00073 0.11 +2.3
74,743 + CCNA_00073 0.11 +2.0
74,751 - CCNA_00073 0.12 -1.0
74,751 - CCNA_00073 0.12 +1.1
74,754 + CCNA_00073 0.12 +2.3
74,754 + CCNA_00073 0.12 +2.8
74,762 - CCNA_00073 0.12 +1.8
74,774 + CCNA_00073 0.13 +3.0
74,782 - CCNA_00073 0.14 +0.9
74,782 - CCNA_00073 0.14 -0.8
74,789 + CCNA_00073 0.14 +2.8
74,789 + CCNA_00073 0.14 +2.5
74,794 + CCNA_00073 0.14 +2.6
74,797 - CCNA_00073 0.15 +1.0
74,808 - CCNA_00073 0.15 +0.8
74,808 - CCNA_00073 0.15 +1.3
74,811 + CCNA_00073 0.15 +2.7
74,821 + CCNA_00073 0.16 +2.3
74,833 - CCNA_00073 0.17 +0.1
74,853 - CCNA_00073 0.18 +1.3
74,891 + CCNA_00073 0.21 +3.3
74,927 + CCNA_00073 0.23 +2.3
74,927 + CCNA_00073 0.23 +2.0
74,946 - CCNA_00073 0.24 +1.7
74,984 + CCNA_00073 0.27 +3.0
74,984 + CCNA_00073 0.27 +2.5
75,034 - CCNA_00073 0.30 +0.9
75,045 + CCNA_00073 0.31 +2.2
75,053 - CCNA_00073 0.31 +1.4
75,064 + CCNA_00073 0.32 +2.7
75,064 + CCNA_00073 0.32 +2.7
75,064 + CCNA_00073 0.32 +1.4
75,072 - CCNA_00073 0.32 +1.2
75,108 + CCNA_00073 0.35 +2.8
75,149 + CCNA_00073 0.38 +2.4
75,151 + CCNA_00073 0.38 +1.9
75,151 + CCNA_00073 0.38 +2.2
75,159 - CCNA_00073 0.38 +1.1
75,188 + CCNA_00073 0.40 +2.5
75,210 + CCNA_00073 0.41 +1.4
75,210 + CCNA_00073 0.41 +1.4
75,213 - CCNA_00073 0.42 +0.6
75,225 - CCNA_00073 0.42 +0.8
75,304 + CCNA_00073 0.48 +2.6
75,304 + CCNA_00073 0.48 +1.7
75,312 - CCNA_00073 0.48 -1.5
75,312 - CCNA_00073 0.48 +0.1
75,312 - CCNA_00073 0.48 -0.5
75,336 - CCNA_00073 0.50 +1.0
75,352 + CCNA_00073 0.51 +1.2
75,352 + CCNA_00073 0.51 +1.5
75,352 + CCNA_00073 0.51 +2.9
75,360 - CCNA_00073 0.51 +0.6
75,375 + CCNA_00073 0.52 +2.4
75,375 + CCNA_00073 0.52 +2.7
75,379 + CCNA_00073 0.52 +0.7
75,417 - CCNA_00073 0.55 +0.5
75,417 - CCNA_00073 0.55 +1.4
75,417 - CCNA_00073 0.55 +1.3
75,444 - CCNA_00073 0.57 +1.2
75,444 - CCNA_00073 0.57 +0.6
75,481 + CCNA_00073 0.59 +2.0
75,520 - CCNA_00073 0.62 -0.4
75,520 - CCNA_00073 0.62 +0.6
75,537 - CCNA_00073 0.63 +1.7
75,611 + CCNA_00073 0.68 +3.2
75,655 + CCNA_00073 0.70 +2.4
75,659 + CCNA_00073 0.71 +2.4
75,716 + CCNA_00073 0.74 +2.2
75,724 - CCNA_00073 0.75 +1.3
75,727 + CCNA_00073 0.75 +2.6
75,727 + CCNA_00073 0.75 +2.1
75,752 - CCNA_00073 0.77 +1.2
75,769 - CCNA_00073 0.78 +1.1
75,776 + CCNA_00073 0.78 +2.2
75,776 + CCNA_00073 0.78 +4.3
75,784 + CCNA_00073 0.79 +2.7
75,791 + CCNA_00073 0.79 +3.3
75,916 + CCNA_00073 0.87 +2.5
75,924 - CCNA_00073 0.88 +1.0
75,930 - CCNA_00073 0.88 +1.5
75,941 + CCNA_00073 0.89 +3.2
75,941 + CCNA_00073 0.89 +2.6
75,949 - CCNA_00073 0.90 +0.9
75,993 + +1.7
76,001 - +0.5
76,052 + +1.4
76,277 + +1.0
76,286 - +0.7
76,286 - +0.8
76,312 + +1.6
76,345 + +0.8
76,371 - +0.1
76,389 + +1.1
76,392 - +1.0
76,457 + -1.7
76,457 + +0.9
76,457 + +0.3
76,462 + -0.7
76,465 - +1.3
76,465 - +0.6
76,465 - +0.5
76,465 - +1.0
76,465 - +0.3
76,465 - +1.2
76,470 - +0.9
76,487 + -0.4
76,487 + -0.7
76,495 - +1.6
76,495 - +0.8
76,495 - +1.4
76,495 - +1.7
76,499 + -0.0
76,536 - +1.1
76,546 - +2.4
76,570 - +1.1
76,582 - +0.7
76,655 + +0.9
76,683 - +0.3
76,683 - +0.1
76,683 - +0.9
76,683 - +0.3
76,683 - +1.1
76,690 + -1.5
76,697 + +1.2
76,722 - CCNA_00074 0.11 +1.8
76,725 + CCNA_00074 0.11 +0.2
76,725 + CCNA_00074 0.11 +0.1
76,733 - CCNA_00074 0.12 -0.8
76,733 - CCNA_00074 0.12 -1.0
76,799 - CCNA_00074 0.15 +2.5
76,835 - CCNA_00074 0.16 +1.1
76,885 - CCNA_00074 0.19 -1.3
76,891 - CCNA_00074 0.19 +0.4
76,963 - CCNA_00074 0.22 -0.2
77,011 + CCNA_00074 0.24 -0.5
77,011 + +1.5
77,011 + CCNA_00074 0.24 -1.4
77,018 - CCNA_00074 0.25 +0.4
77,019 - CCNA_00074 0.25 +0.7
77,019 - CCNA_00074 0.25 -0.1
77,019 - CCNA_00074 0.25 +0.9

Or see this region's nucleotide sequence