Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS21045

Experiment: Recovery broth with Ticarcillin 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 4e-04 mM
1,927,163	+		BBR_RS18460	0.83	-0.5
1,927,163	+		BBR_RS18460	0.83	+1.2
1,927,163	+		BBR_RS18460	0.83	+1.1
1,927,163	+		BBR_RS18460	0.83	+1.4
1,927,171	-		BBR_RS18460	0.84	-0.3
1,927,215	-		BBR_RS18460	0.87	+0.8
1,927,215	-		BBR_RS18460	0.87	-2.2
1,927,251	-		BBR_RS18460	0.89	+2.7
1,927,251	-		BBR_RS18460	0.89	+0.5
1,927,261	-				-0.2
1,927,263	+				+0.4
1,927,296	+				-0.4
1,927,296	+				-0.4
1,927,303	-				-0.1
1,927,360	-				+0.0
1,927,413	-				-0.5
1,927,435	+				+0.7
1,927,469	+				+0.5
1,927,477	-				-0.1
1,927,477	-				+0.6
1,927,477	-				-1.6
1,927,518	+				+2.6
1,927,551	+				+0.5
1,927,590	+				+0.7
1,927,593	-				+0.4
1,927,593	-				+0.4
1,927,595	+				-0.2
1,927,595	+				-0.1
1,927,595	+				-0.5
1,927,595	+				+0.2
1,927,595	+				-0.2
1,927,595	+				+0.2
1,927,595	+				-0.3
1,927,600	+				+2.2
1,927,603	-				-2.3
1,927,603	-				+1.7
1,927,607	+				-0.5
1,927,608	-				-1.0
1,927,623	+				+1.2
1,927,623	+				+0.4
1,927,646	-				+0.3
1,927,646	-				+1.7
1,927,697	+				+0.4
1,927,697	+				-0.1
1,927,705	+				+0.2
1,927,705	-				+0.8
1,927,710	+				-0.3
1,927,813	+				+0.4
1,927,828	+				+0.4
1,927,828	+				+0.8
1,927,847	-		BBR_RS18465	0.16	-0.1
1,927,857	-		BBR_RS18465	0.20	-0.8
1,927,859	+		BBR_RS18465	0.21	+0.3
1,927,867	-		BBR_RS18465	0.24	+0.1
1,927,877	-		BBR_RS18465	0.28	+1.5
1,927,877	-		BBR_RS18465	0.28	-1.6
1,927,898	+		BBR_RS18465	0.36	+1.2
1,927,898	+		BBR_RS18465	0.36	+1.0
1,927,900	+		BBR_RS18465	0.36	-0.9
1,927,906	+		BBR_RS18465	0.39	-0.9
1,927,906	+		BBR_RS18465	0.39	+0.1
1,927,906	-		BBR_RS18465	0.39	+0.7
1,927,906	-		BBR_RS18465	0.39	+1.0
1,927,906	-		BBR_RS18465	0.39	-0.9
1,927,908	-		BBR_RS18465	0.39	-1.3
1,927,936	-		BBR_RS18465	0.50	-1.8
1,927,936	-		BBR_RS18465	0.50	-0.2
1,927,967	+		BBR_RS18465	0.62	-0.4
1,927,975	+		BBR_RS18465	0.65	+0.8
1,927,982	-		BBR_RS18465	0.67	+0.2
1,927,982	-		BBR_RS18465	0.67	+1.9
1,927,982	-		BBR_RS18465	0.67	+0.4
1,927,983	+		BBR_RS18465	0.68	-1.5
1,927,989	+		BBR_RS18465	0.70	+0.3
1,927,991	-		BBR_RS18465	0.71	+0.6
1,928,003	+		BBR_RS18465	0.75	-0.2
1,928,009	+		BBR_RS18465	0.78	+1.4
1,928,010	-		BBR_RS18465	0.78	+0.0
1,928,017	-		BBR_RS18465	0.81	+0.6
1,928,017	-		BBR_RS18465	0.81	-0.4
1,928,031	+		BBR_RS18465	0.86	+3.1
1,928,107	+				+2.8
1,928,113	-				+1.2
1,928,115	-				-0.4
1,928,115	-				+1.1
1,928,115	-				+1.0
1,928,115	-				-0.9
1,928,115	-				+0.2
1,928,115	-				+0.7
1,928,115	-				-0.2
1,928,115	-				-1.8
1,928,115	-				+0.7
1,928,137	+				+0.5
1,928,145	-				-0.1
1,928,150	-				+1.7
1,928,179	+		BBR_RS21045	0.10	+0.5
1,928,182	-		BBR_RS21045	0.11	+1.7
1,928,182	-		BBR_RS21045	0.11	+2.2
1,928,223	-		BBR_RS21045	0.21	-1.0
1,928,229	-		BBR_RS21045	0.23	-0.1
1,928,247	+		BBR_RS21045	0.27	+1.5
1,928,311	-		BBR_RS21045	0.43	+1.6
1,928,311	-		BBR_RS21045	0.43	+1.9
1,928,319	-		BBR_RS21045	0.45	-1.0
1,928,326	+		BBR_RS21045	0.47	+0.1
1,928,405	+		BBR_RS21045	0.67	-1.3
1,928,408	-		BBR_RS21045	0.68	+0.6
1,928,502	+				-0.7
1,928,537	+				+1.8
1,928,557	+				+0.0
1,928,565	-				-0.8
1,928,574	-				+0.9
1,928,702	+				+0.8
1,928,704	-				+0.5
1,928,721	-		BBR_RS18470	0.10	+1.1
1,928,722	+		BBR_RS18470	0.10	+0.7
1,928,803	+		BBR_RS18470	0.16	+0.9
1,928,803	+		BBR_RS18470	0.16	+0.8
1,928,803	+		BBR_RS18470	0.16	+1.1
1,928,821	-		BBR_RS18470	0.17	-0.3
1,928,841	-		BBR_RS18470	0.18	+0.1
1,928,848	+		BBR_RS18470	0.19	+0.8
1,928,860	-		BBR_RS18470	0.20	-0.2
1,928,886	-		BBR_RS18470	0.21	+1.9
1,928,936	-		BBR_RS18470	0.25	+0.9
1,928,938	-		BBR_RS18470	0.25	+0.9
1,928,960	-		BBR_RS18470	0.26	+1.2
1,929,009	-		BBR_RS18470	0.30	+1.1
1,929,073	+		BBR_RS18470	0.34	+1.2
1,929,085	+		BBR_RS18470	0.35	-0.9
1,929,085	+		BBR_RS18470	0.35	-0.5
1,929,085	+		BBR_RS18470	0.35	+0.4
1,929,093	-		BBR_RS18470	0.35	+1.2
1,929,093	-		BBR_RS18470	0.35	-0.2
1,929,105	-		BBR_RS18470	0.36	+2.6
1,929,105	-		BBR_RS18470	0.36	+2.4
1,929,115	-		BBR_RS18470	0.37	+1.0
1,929,214	+		BBR_RS18470	0.44	+2.9
1,929,219	-		BBR_RS18470	0.44	+0.7
1,929,233	+		BBR_RS18470	0.45	+1.1
1,929,246	-		BBR_RS18470	0.46	+3.6
1,929,246	-		BBR_RS18470	0.46	+1.2
1,929,268	+		BBR_RS18470	0.47	+0.9
1,929,288	-		BBR_RS18470	0.49	+1.2
1,929,292	+		BBR_RS18470	0.49	-0.2
1,929,300	-		BBR_RS18470	0.49	+0.4
1,929,414	+		BBR_RS18470	0.57	+1.0
1,929,529	-		BBR_RS18470	0.65	+0.8
1,929,531	-		BBR_RS18470	0.65	-1.6