Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20790

Experiment: Recovery broth with Ticarcillin 4e-04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13670 and BBR_RS20790 are separated by 173 nucleotidesBBR_RS20790 and BBR_RS13675 are separated by 36 nucleotidesBBR_RS13675 and BBR_RS20795 are separated by 666 nucleotides BBR_RS13670: BBR_RS13670 - hypothetical protein, at 840,561 to 841,793 _RS13670 BBR_RS20790: BBR_RS20790 - hypothetical protein, at 841,967 to 842,164 _RS20790 BBR_RS13675: BBR_RS13675 - glutaredoxin-like protein, at 842,201 to 842,452 _RS13675 BBR_RS20795: BBR_RS20795 - cystathionine gamma-lyase, at 843,119 to 843,286 _RS20795 Position (kb) 841 842 843Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 841.001 kb on + strand, within BBR_RS13670at 841.008 kb on + strand, within BBR_RS13670at 841.008 kb on + strand, within BBR_RS13670at 841.025 kb on + strand, within BBR_RS13670at 841.031 kb on + strand, within BBR_RS13670at 841.033 kb on - strand, within BBR_RS13670at 841.094 kb on + strand, within BBR_RS13670at 841.097 kb on - strand, within BBR_RS13670at 841.155 kb on - strand, within BBR_RS13670at 841.179 kb on + strand, within BBR_RS13670at 841.208 kb on - strand, within BBR_RS13670at 841.246 kb on - strand, within BBR_RS13670at 841.248 kb on + strand, within BBR_RS13670at 841.251 kb on - strand, within BBR_RS13670at 841.251 kb on - strand, within BBR_RS13670at 841.256 kb on - strand, within BBR_RS13670at 841.261 kb on - strand, within BBR_RS13670at 841.282 kb on - strand, within BBR_RS13670at 841.294 kb on - strand, within BBR_RS13670at 841.294 kb on - strand, within BBR_RS13670at 841.344 kb on - strand, within BBR_RS13670at 841.351 kb on - strand, within BBR_RS13670at 841.371 kb on + strand, within BBR_RS13670at 841.371 kb on + strand, within BBR_RS13670at 841.386 kb on + strand, within BBR_RS13670at 841.388 kb on + strand, within BBR_RS13670at 841.405 kb on + strand, within BBR_RS13670at 841.413 kb on - strand, within BBR_RS13670at 841.413 kb on - strand, within BBR_RS13670at 841.418 kb on - strand, within BBR_RS13670at 841.451 kb on + strand, within BBR_RS13670at 841.451 kb on + strand, within BBR_RS13670at 841.477 kb on + strand, within BBR_RS13670at 841.495 kb on + strand, within BBR_RS13670at 841.585 kb on + strand, within BBR_RS13670at 841.607 kb on + strand, within BBR_RS13670at 841.654 kb on + strand, within BBR_RS13670at 841.727 kb on - strandat 841.822 kb on + strandat 841.832 kb on + strandat 841.832 kb on + strandat 841.850 kb on - strandat 841.905 kb on - strandat 841.974 kb on - strandat 842.070 kb on - strand, within BBR_RS20790at 842.077 kb on + strand, within BBR_RS20790at 842.077 kb on + strand, within BBR_RS20790at 842.077 kb on + strand, within BBR_RS20790at 842.085 kb on - strand, within BBR_RS20790at 842.085 kb on - strand, within BBR_RS20790at 842.160 kb on + strandat 842.215 kb on + strandat 842.220 kb on + strandat 842.220 kb on + strandat 842.220 kb on + strandat 842.222 kb on + strandat 842.228 kb on - strand, within BBR_RS13675at 842.228 kb on - strand, within BBR_RS13675at 842.228 kb on - strand, within BBR_RS13675at 842.257 kb on - strand, within BBR_RS13675at 842.257 kb on - strand, within BBR_RS13675at 842.262 kb on - strand, within BBR_RS13675at 842.277 kb on - strand, within BBR_RS13675at 842.278 kb on + strand, within BBR_RS13675at 842.278 kb on + strand, within BBR_RS13675at 842.278 kb on + strand, within BBR_RS13675at 842.286 kb on - strand, within BBR_RS13675at 842.286 kb on - strand, within BBR_RS13675at 842.286 kb on - strand, within BBR_RS13675at 842.286 kb on - strand, within BBR_RS13675at 842.353 kb on + strand, within BBR_RS13675at 842.365 kb on + strand, within BBR_RS13675at 842.400 kb on + strand, within BBR_RS13675at 842.408 kb on - strand, within BBR_RS13675at 842.408 kb on - strand, within BBR_RS13675at 842.510 kb on + strandat 842.518 kb on - strandat 842.518 kb on - strandat 842.552 kb on + strandat 842.562 kb on + strandat 842.628 kb on + strandat 842.628 kb on + strandat 842.695 kb on + strandat 842.695 kb on + strandat 842.700 kb on + strandat 842.708 kb on - strandat 842.717 kb on + strandat 842.767 kb on - strandat 842.785 kb on + strandat 842.937 kb on + strandat 842.943 kb on - strandat 843.008 kb on + strandat 843.064 kb on + strandat 843.072 kb on - strandat 843.072 kb on - strandat 843.111 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Ticarcillin 4e-04 mM
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841,001 + BBR_RS13670 0.36 -1.2
841,008 + BBR_RS13670 0.36 -1.7
841,008 + BBR_RS13670 0.36 -0.9
841,025 + BBR_RS13670 0.38 +0.8
841,031 + BBR_RS13670 0.38 -1.0
841,033 - BBR_RS13670 0.38 +0.3
841,094 + BBR_RS13670 0.43 -1.3
841,097 - BBR_RS13670 0.43 -0.4
841,155 - BBR_RS13670 0.48 +1.6
841,179 + BBR_RS13670 0.50 -0.1
841,208 - BBR_RS13670 0.52 -2.7
841,246 - BBR_RS13670 0.56 +1.6
841,248 + BBR_RS13670 0.56 +4.8
841,251 - BBR_RS13670 0.56 -0.1
841,251 - BBR_RS13670 0.56 +1.7
841,256 - BBR_RS13670 0.56 +0.6
841,261 - BBR_RS13670 0.57 +1.2
841,282 - BBR_RS13670 0.58 -1.2
841,294 - BBR_RS13670 0.59 -0.9
841,294 - BBR_RS13670 0.59 +1.6
841,344 - BBR_RS13670 0.64 -0.4
841,351 - BBR_RS13670 0.64 -1.3
841,371 + BBR_RS13670 0.66 +1.5
841,371 + BBR_RS13670 0.66 -1.4
841,386 + BBR_RS13670 0.67 +0.2
841,388 + BBR_RS13670 0.67 +0.1
841,405 + BBR_RS13670 0.68 +1.7
841,413 - BBR_RS13670 0.69 +1.1
841,413 - BBR_RS13670 0.69 -0.7
841,418 - BBR_RS13670 0.70 -0.1
841,451 + BBR_RS13670 0.72 +0.4
841,451 + BBR_RS13670 0.72 -1.3
841,477 + BBR_RS13670 0.74 -0.6
841,495 + BBR_RS13670 0.76 +1.7
841,585 + BBR_RS13670 0.83 +1.2
841,607 + BBR_RS13670 0.85 -1.6
841,654 + BBR_RS13670 0.89 -0.9
841,727 - -0.3
841,822 + -0.6
841,832 + +2.3
841,832 + -1.2
841,850 - -0.7
841,905 - -1.2
841,974 - +0.4
842,070 - BBR_RS20790 0.52 +4.6
842,077 + BBR_RS20790 0.56 -1.0
842,077 + BBR_RS20790 0.56 +1.5
842,077 + BBR_RS20790 0.56 -0.0
842,085 - BBR_RS20790 0.60 -0.7
842,085 - BBR_RS20790 0.60 -1.4
842,160 + -1.2
842,215 + +0.4
842,220 + -1.0
842,220 + +0.9
842,220 + -1.1
842,222 + -0.1
842,228 - BBR_RS13675 0.11 +1.2
842,228 - BBR_RS13675 0.11 +0.4
842,228 - BBR_RS13675 0.11 +0.3
842,257 - BBR_RS13675 0.22 -0.5
842,257 - BBR_RS13675 0.22 -1.3
842,262 - BBR_RS13675 0.24 +1.8
842,277 - BBR_RS13675 0.30 -1.1
842,278 + BBR_RS13675 0.31 -0.6
842,278 + BBR_RS13675 0.31 +0.4
842,278 + BBR_RS13675 0.31 +0.0
842,286 - BBR_RS13675 0.34 -0.4
842,286 - BBR_RS13675 0.34 +0.2
842,286 - BBR_RS13675 0.34 +1.2
842,286 - BBR_RS13675 0.34 -0.5
842,353 + BBR_RS13675 0.60 +0.3
842,365 + BBR_RS13675 0.65 -1.2
842,400 + BBR_RS13675 0.79 -1.3
842,408 - BBR_RS13675 0.82 -0.9
842,408 - BBR_RS13675 0.82 -0.7
842,510 + -0.1
842,518 - -1.1
842,518 - +5.6
842,552 + +0.4
842,562 + -0.8
842,628 + -0.2
842,628 + -1.1
842,695 + -1.4
842,695 + -1.3
842,700 + -0.4
842,708 - +0.4
842,717 + +0.5
842,767 - -0.8
842,785 + -1.1
842,937 + -0.9
842,943 - -0.1
843,008 + -1.3
843,064 + -0.6
843,072 - -0.3
843,072 - -0.2
843,111 - +0.4

Or see this region's nucleotide sequence