Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19790

Experiment: Recovery broth with Ticarcillin 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 4e-04 mM
2,231,718	-				-1.3
2,231,728	-				-0.8
2,231,731	+				+1.0
2,231,738	-				-0.0
2,232,743	-				-0.9
2,232,749	-				-2.2
2,232,771	-				+1.0
2,232,771	-				-0.3
2,232,803	-				+0.4
2,232,803	-				+1.1
2,232,803	-				+1.0
2,232,809	+				-0.9
2,232,809	+				+1.0
2,232,817	-				-1.1
2,232,823	-				-1.0
2,232,824	+				+0.8
2,232,850	+				-0.2
2,232,859	+				-0.5
2,232,908	+				+0.5
2,232,908	+				-0.1
2,232,908	+				-1.6
2,232,908	+				-1.3
2,232,908	+				-1.7
2,232,908	+				-1.5
2,232,916	-				-0.8
2,232,916	-				-1.7
2,232,931	+				-1.8
2,232,934	-				-0.5
2,232,946	+				-1.3
2,232,953	+				-1.0
2,232,966	-				-1.1
2,232,966	-				-3.4
2,232,966	-				-0.7
2,232,967	+				-0.4
2,232,967	+				-2.8
2,232,975	-				-0.3
2,232,982	+				+0.9
2,232,987	+				-2.1
2,232,990	-				-1.6
2,232,995	-				-0.9
2,232,995	-				-1.8
2,233,019	-		BBR_RS19795	0.11	-1.0
2,233,019	-		BBR_RS19795	0.11	-2.5
2,233,032	-		BBR_RS19795	0.12	-0.2
2,233,063	-		BBR_RS19795	0.13	-0.9
2,233,063	-		BBR_RS19795	0.13	-2.3
2,233,063	-		BBR_RS19795	0.13	-1.7
2,233,079	+		BBR_RS19795	0.14	-2.2
2,233,087	-		BBR_RS19795	0.14	+0.2
2,233,100	+		BBR_RS19795	0.15	-1.3
2,233,108	-		BBR_RS19795	0.15	+0.0
2,233,112	+		BBR_RS19795	0.15	-1.5
2,233,118	-		BBR_RS19795	0.16	-0.3
2,233,120	-		BBR_RS19795	0.16	-0.7
2,233,163	+		BBR_RS19795	0.18	-1.2
2,233,173	+		BBR_RS19795	0.18	-0.6
2,233,173	+		BBR_RS19795	0.18	-1.3
2,233,240	+		BBR_RS19795	0.22	-2.7
2,233,240	+		BBR_RS19795	0.22	+0.4
2,233,240	+		BBR_RS19795	0.22	+0.4
2,233,240	+		BBR_RS19795	0.22	-0.3
2,233,240	+		BBR_RS19795	0.22	-1.5
2,233,240	+		BBR_RS19795	0.22	-0.4
2,233,240	+		BBR_RS19795	0.22	+0.7
2,233,240	+		BBR_RS19795	0.22	-1.9
2,233,240	+		BBR_RS19795	0.22	-1.3
2,233,242	+		BBR_RS19795	0.22	-1.1
2,233,242	+		BBR_RS19795	0.22	-0.3
2,233,248	-		BBR_RS19795	0.22	-0.5
2,233,248	-		BBR_RS19795	0.22	-1.0
2,233,248	-		BBR_RS19795	0.22	-1.4
2,233,248	-		BBR_RS19795	0.22	-1.5
2,233,248	-		BBR_RS19795	0.22	-2.1
2,233,248	-		BBR_RS19795	0.22	+0.1
2,233,248	-		BBR_RS19795	0.22	-0.7
2,233,248	-		BBR_RS19795	0.22	-0.5
2,233,258	-		BBR_RS19795	0.22	-0.1
2,233,281	-		BBR_RS19795	0.24	-1.0
2,233,291	-		BBR_RS19795	0.24	-1.7
2,233,291	-		BBR_RS19795	0.24	-2.0
2,233,291	-		BBR_RS19795	0.24	-0.6
2,233,291	-		BBR_RS19795	0.24	-2.8
2,233,298	-		BBR_RS19795	0.24	-2.1
2,233,298	-		BBR_RS19795	0.24	-0.5
2,233,305	-		BBR_RS19795	0.25	-0.8
2,233,310	-		BBR_RS19795	0.25	+0.5
2,233,332	+		BBR_RS19795	0.26	+1.4
2,233,332	+		BBR_RS19795	0.26	-0.7
2,233,332	+		BBR_RS19795	0.26	-0.9
2,233,337	+		BBR_RS19795	0.26	-0.4
2,233,340	-		BBR_RS19795	0.26	-1.6
2,233,340	-		BBR_RS19795	0.26	-0.5
2,233,340	-		BBR_RS19795	0.26	-0.6
2,233,340	-		BBR_RS19795	0.26	-1.3
2,233,348	-		BBR_RS19795	0.27	-1.5
2,233,353	-		BBR_RS19795	0.27	-4.0
2,233,394	-		BBR_RS19795	0.29	-1.2
2,233,396	+		BBR_RS19795	0.29	-2.1
2,233,398	-		BBR_RS19795	0.29	-1.7
2,233,418	+		BBR_RS19795	0.30	+0.5
2,233,423	+		BBR_RS19795	0.30	-0.6
2,233,425	-		BBR_RS19795	0.30	-1.5
2,233,426	-		BBR_RS19795	0.30	-1.5
2,233,436	-		BBR_RS19795	0.31	-2.4
2,233,437	-		BBR_RS19795	0.31	-0.8
2,233,437	-		BBR_RS19795	0.31	-0.9
2,233,455	+		BBR_RS19795	0.32	+0.4
2,233,500	-		BBR_RS19795	0.34	-1.1
2,233,509	+		BBR_RS19795	0.34	-1.7
2,233,509	+		BBR_RS19795	0.34	-0.9
2,233,509	+		BBR_RS19795	0.34	-0.8
2,233,509	+		BBR_RS19795	0.34	-2.1
2,233,509	+		BBR_RS19795	0.34	-2.3
2,233,509	+		BBR_RS19795	0.34	-1.1
2,233,517	-		BBR_RS19795	0.35	-1.1
2,233,517	-		BBR_RS19795	0.35	-0.3
2,233,577	-		BBR_RS19795	0.38	-0.8
2,233,577	-		BBR_RS19795	0.38	-0.5
2,233,607	-		BBR_RS19795	0.39	-2.8
2,233,607	-		BBR_RS19795	0.39	-2.1
2,233,622	-		BBR_RS19795	0.40	-1.8
2,233,640	-		BBR_RS19795	0.41	+0.1
2,233,640	-		BBR_RS19795	0.41	-2.8
2,233,642	+		BBR_RS19795	0.41	-0.6
2,233,657	-		BBR_RS19795	0.42	-1.1
2,233,662	-		BBR_RS19795	0.42	-2.2
2,233,703	+		BBR_RS19795	0.44	-2.4
2,233,703	+		BBR_RS19795	0.44	-0.1
2,233,703	+		BBR_RS19795	0.44	-1.5
2,233,711	-		BBR_RS19795	0.44	-1.3
2,233,711	-		BBR_RS19795	0.44	-0.9
2,233,726	-		BBR_RS19795	0.45	-0.9