Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18440

Experiment: Recovery broth with Ticarcillin 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 4e-04 mM
1,921,524	-		BBR_RS18430	0.79	+0.2
1,921,577	-		BBR_RS18430	0.83	-0.9
1,921,600	+		BBR_RS18430	0.84	-0.1
1,921,618	+		BBR_RS18430	0.86	+0.4
1,921,623	+		BBR_RS18430	0.86	-0.7
1,921,677	-		BBR_RS18430	0.90	+0.3
1,921,703	+				+1.2
1,921,708	+				+0.6
1,921,716	-				+0.7
1,921,718	+				+0.9
1,921,718	+				-1.6
1,921,722	+				-0.3
1,921,737	-				+0.7
1,921,748	+				+0.6
1,921,756	-				-1.0
1,921,756	-				+0.3
1,921,756	-				-0.9
1,921,756	-				-0.1
1,921,766	-				-1.2
1,921,778	+				-0.9
1,921,793	+				-1.2
1,921,801	-				-2.3
1,921,801	-				-2.1
1,921,828	+				-0.9
1,921,830	-				-1.6
1,921,840	+				+0.4
1,921,843	-				+1.7
1,921,848	-				-1.6
1,921,862	-		BBR_RS18435	0.12	+0.8
1,921,883	-		BBR_RS18435	0.17	-1.5
1,921,883	-		BBR_RS18435	0.17	+0.3
1,921,892	+		BBR_RS18435	0.19	+1.4
1,921,915	+		BBR_RS18435	0.25	+1.5
1,921,923	-		BBR_RS18435	0.27	-0.4
1,921,923	-		BBR_RS18435	0.27	-1.0
1,921,960	+		BBR_RS18435	0.36	+0.9
1,922,018	+		BBR_RS18435	0.50	-0.1
1,922,018	+		BBR_RS18435	0.50	-1.8
1,922,026	-		BBR_RS18435	0.52	-0.4
1,922,040	-		BBR_RS18435	0.56	+0.3
1,922,053	+		BBR_RS18435	0.59	-0.1
1,922,061	-		BBR_RS18435	0.61	+1.2
1,922,061	-		BBR_RS18435	0.61	+1.4
1,922,061	-		BBR_RS18435	0.61	-0.7
1,922,061	-		BBR_RS18435	0.61	+0.0
1,922,094	+		BBR_RS18435	0.69	-2.0
1,922,099	+		BBR_RS18435	0.70	-0.1
1,922,107	-		BBR_RS18435	0.72	-0.1
1,922,159	+		BBR_RS18435	0.85	+1.4
1,922,164	+		BBR_RS18435	0.86	-0.9
1,922,172	-		BBR_RS18435	0.88	-0.8
1,922,200	+				+1.6
1,922,200	-				-0.4
1,922,230	+				+1.8
1,922,255	+				+0.5
1,922,277	-				+0.2
1,922,277	-				-1.2
1,922,277	-				-0.6
1,922,291	+				-0.6
1,922,299	-				+0.0
1,922,305	+				+0.0
1,922,321	+				+0.8
1,922,333	+				+0.2
1,922,333	+				+0.3
1,922,350	-				-0.2
1,922,351	-				-0.6
1,922,355	-				+0.2
1,922,357	+				+0.8
1,922,358	+				-0.1
1,922,365	-				+1.7
1,922,365	-				+2.0
1,922,365	-				+0.4
1,922,365	-				+0.4
1,922,365	-				+0.2
1,922,365	-				+0.8
1,922,365	-				-0.8
1,922,365	-				+1.9
1,922,367	+				-0.1
1,922,386	-				+0.2
1,922,422	+				-1.8
1,922,430	-				+0.8
1,922,430	-				-0.4
1,922,442	+				-0.4
1,922,450	-				+0.6
1,922,450	-				+0.4
1,922,477	+				+1.8
1,922,480	-				+0.1
1,922,487	+				-0.0
1,922,489	+				-0.5
1,922,533	-				+0.6
1,922,584	+		BBR_RS18440	0.20	-0.5
1,922,584	+		BBR_RS18440	0.20	+0.0
1,922,590	+		BBR_RS18440	0.21	-0.0
1,922,592	+		BBR_RS18440	0.22	-0.3
1,922,592	-		BBR_RS18440	0.22	-0.3
1,922,600	+		BBR_RS18440	0.24	-1.6
1,922,600	+		BBR_RS18440	0.24	-1.0
1,922,618	-		BBR_RS18440	0.29	+1.3
1,922,640	+		BBR_RS18440	0.35	+3.4
1,922,640	+		BBR_RS18440	0.35	+3.8
1,922,713	-		BBR_RS18440	0.54	-0.5
1,922,768	-		BBR_RS18440	0.69	-0.3
1,922,805	-		BBR_RS18440	0.79	-0.6
1,922,867	-				+1.9
1,922,867	-				-0.3
1,922,900	+				+0.3
1,922,933	+				+2.8
1,922,933	+				-0.0
1,922,933	-				+2.5
1,922,993	+		BBR_RS18445	0.24	+0.8
1,922,993	+		BBR_RS18445	0.24	-1.5
1,923,006	-		BBR_RS18445	0.28	+0.3
1,923,020	+		BBR_RS18445	0.32	+1.1
1,923,020	+		BBR_RS18445	0.32	-0.3
1,923,043	-		BBR_RS18445	0.39	+3.3
1,923,068	+		BBR_RS18445	0.47	-1.5
1,923,072	-		BBR_RS18445	0.48	+0.6
1,923,084	-		BBR_RS18445	0.52	-1.2
1,923,116	+		BBR_RS18445	0.62	-1.5
1,923,144	+		BBR_RS18445	0.70	+2.6
1,923,149	+		BBR_RS18445	0.72	+2.2
1,923,153	-		BBR_RS18445	0.73	+1.4
1,923,155	+		BBR_RS18445	0.74	+1.0
1,923,163	-		BBR_RS18445	0.76	-0.2
1,923,208	+				+0.1
1,923,223	-				+1.2
1,923,223	-				+1.7
1,923,271	-				-0.8
1,923,277	+				+3.1
1,923,315	+				-1.5
1,923,317	-				+2.6
1,923,318	-				-0.6
1,923,323	-				-0.1
1,923,349	+				-0.8
1,923,446	+				-2.0
1,923,456	-				+0.7
1,923,471	+				-1.4
1,923,481	+				-1.1
1,923,489	-		BBR_RS18450	0.10	-1.9
1,923,523	-		BBR_RS18450	0.13	+0.5
1,923,537	-		BBR_RS18450	0.13	-0.3
1,923,537	-		BBR_RS18450	0.13	+2.9
1,923,539	+		BBR_RS18450	0.14	-1.5
1,923,544	-		BBR_RS18450	0.14	-0.0
1,923,544	-		BBR_RS18450	0.14	-0.2
1,923,547	-		BBR_RS18450	0.14	-1.0
1,923,622	+		BBR_RS18450	0.19	+0.3
1,923,622	+		BBR_RS18450	0.19	+1.0
1,923,731	+		BBR_RS18450	0.26	+0.2
1,923,735	+		BBR_RS18450	0.26	-0.2
1,923,735	+		BBR_RS18450	0.26	-0.2
1,923,739	-		BBR_RS18450	0.26	-0.9
1,923,739	-		BBR_RS18450	0.26	-0.4
1,923,743	-		BBR_RS18450	0.27	-1.0
1,923,743	-		BBR_RS18450	0.27	-0.2
1,923,746	+		BBR_RS18450	0.27	-0.3
1,923,749	-		BBR_RS18450	0.27	+0.6
1,923,759	-		BBR_RS18450	0.28	-0.3
1,923,769	-		BBR_RS18450	0.28	+0.4
1,923,779	+		BBR_RS18450	0.29	-0.3
1,923,785	-		BBR_RS18450	0.29	+1.6
1,923,785	-		BBR_RS18450	0.29	+1.2
1,923,838	+		BBR_RS18450	0.33	-0.3
1,923,838	+		BBR_RS18450	0.33	-0.1
1,923,838	+		BBR_RS18450	0.33	+0.3
1,923,838	+		BBR_RS18450	0.33	+1.0
1,923,838	+		BBR_RS18450	0.33	-0.5
1,923,838	+		BBR_RS18450	0.33	-0.8
1,923,845	+		BBR_RS18450	0.33	+0.4
1,923,845	+		BBR_RS18450	0.33	+1.1
1,923,845	+		BBR_RS18450	0.33	-0.9
1,923,845	+		BBR_RS18450	0.33	+1.5
1,923,845	+		BBR_RS18450	0.33	+2.6
1,923,845	+		BBR_RS18450	0.33	+0.7
1,923,845	+		BBR_RS18450	0.33	-0.7
1,923,845	+		BBR_RS18450	0.33	-0.5
1,923,846	-		BBR_RS18450	0.33	+3.0
1,923,846	-		BBR_RS18450	0.33	+0.4
1,923,846	-		BBR_RS18450	0.33	+0.2
1,923,846	-		BBR_RS18450	0.33	-0.7
1,923,846	-		BBR_RS18450	0.33	+1.0
1,923,846	-		BBR_RS18450	0.33	+0.4
1,923,846	-		BBR_RS18450	0.33	+0.1
1,923,853	-		BBR_RS18450	0.34	-1.2
1,923,853	-		BBR_RS18450	0.34	+0.4
1,923,853	-		BBR_RS18450	0.34	+0.4
1,923,853	-		BBR_RS18450	0.34	+0.3
1,923,853	-		BBR_RS18450	0.34	+1.3
1,923,853	-		BBR_RS18450	0.34	+0.0
1,923,853	-		BBR_RS18450	0.34	+0.1
1,923,853	-		BBR_RS18450	0.34	-0.3
1,923,858	-		BBR_RS18450	0.34	-1.6
1,923,858	-		BBR_RS18450	0.34	+0.6
1,923,867	-		BBR_RS18450	0.34	+0.3
1,923,873	+		BBR_RS18450	0.35	+0.4
1,923,873	+		BBR_RS18450	0.35	+1.1