Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18065

Experiment: Recovery broth with Ticarcillin 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 4e-04 mM
1,841,438	+		BBR_RS18055	0.81	+1.1
1,841,446	-		BBR_RS18055	0.82	+1.1
1,841,451	+		BBR_RS18055	0.83	+0.2
1,841,451	+		BBR_RS18055	0.83	-0.1
1,841,488	+		BBR_RS18055	0.88	-0.4
1,841,503	+				-0.9
1,841,504	-				+0.3
1,841,511	-				-0.7
1,841,511	-				-0.7
1,841,511	-				-0.6
1,841,511	-				-0.3
1,841,511	-				-0.7
1,841,511	-				+0.5
1,841,511	-				+1.9
1,841,624	+				-0.2
1,841,626	-				+1.9
1,841,666	+		BBR_RS18060	0.11	+1.1
1,841,681	+		BBR_RS18060	0.13	+1.1
1,841,689	-		BBR_RS18060	0.14	-0.1
1,841,750	+		BBR_RS18060	0.21	-0.8
1,841,759	-		BBR_RS18060	0.22	+2.5
1,841,763	+		BBR_RS18060	0.22	+2.2
1,841,763	+		BBR_RS18060	0.22	+0.3
1,841,771	-		BBR_RS18060	0.23	+0.2
1,841,771	-		BBR_RS18060	0.23	-0.1
1,841,796	-		BBR_RS18060	0.26	-0.7
1,841,835	+		BBR_RS18060	0.30	+1.3
1,841,845	+		BBR_RS18060	0.32	+0.1
1,841,872	+		BBR_RS18060	0.35	-0.8
1,841,878	-		BBR_RS18060	0.35	+1.1
1,841,878	-		BBR_RS18060	0.35	+0.4
1,841,880	-		BBR_RS18060	0.36	+2.9
1,841,915	-		BBR_RS18060	0.40	-2.1
1,841,946	-		BBR_RS18060	0.43	-0.7
1,842,019	+		BBR_RS18060	0.52	-1.6
1,842,046	-		BBR_RS18060	0.55	+0.8
1,842,122	+		BBR_RS18060	0.64	-0.3
1,842,130	+		BBR_RS18060	0.65	+0.1
1,842,130	+		BBR_RS18060	0.65	-0.2
1,842,137	+		BBR_RS18060	0.65	-0.9
1,842,156	+		BBR_RS18060	0.68	+0.7
1,842,163	+		BBR_RS18060	0.68	+1.3
1,842,195	+		BBR_RS18060	0.72	-0.6
1,842,198	+		BBR_RS18060	0.72	+0.4
1,842,257	+		BBR_RS18060	0.79	+2.8
1,842,257	+		BBR_RS18060	0.79	+0.8
1,842,257	+		BBR_RS18060	0.79	+0.5
1,842,280	+		BBR_RS18060	0.82	+3.4
1,842,305	+		BBR_RS18060	0.85	+0.3
1,842,310	-		BBR_RS18060	0.85	+2.0
1,842,316	+		BBR_RS18060	0.86	-0.5
1,842,316	+		BBR_RS18060	0.86	-0.6
1,842,320	+		BBR_RS18060	0.87	-0.1
1,842,324	-		BBR_RS18060	0.87	+0.2
1,842,346	-		BBR_RS18060	0.90	+0.5
1,842,362	+				+1.7
1,842,368	+				+1.6
1,842,378	-				-1.7
1,842,383	-				+1.4
1,842,385	-				+1.5
1,842,387	-				+0.9
1,842,412	-				+0.6
1,842,452	+				+0.6
1,842,499	+				-0.7
1,842,527	+				+0.3
1,842,552	-		BBR_RS18065	0.11	-0.5
1,842,552	-		BBR_RS18065	0.11	+5.9
1,842,552	-		BBR_RS18065	0.11	-0.7
1,842,554	-		BBR_RS18065	0.11	-1.2
1,842,563	+		BBR_RS18065	0.12	+0.6
1,842,569	-		BBR_RS18065	0.13	-1.1
1,842,589	-		BBR_RS18065	0.14	-1.1
1,842,636	+		BBR_RS18065	0.19	+0.6
1,842,657	-		BBR_RS18065	0.21	+0.3
1,842,666	-		BBR_RS18065	0.21	-0.8
1,842,705	+		BBR_RS18065	0.25	+0.2
1,842,718	-		BBR_RS18065	0.26	+0.4
1,842,777	-		BBR_RS18065	0.32	+3.0
1,842,778	-		BBR_RS18065	0.32	+0.7
1,842,778	-		BBR_RS18065	0.32	+1.7
1,842,846	+		BBR_RS18065	0.38	+0.8
1,842,854	+		BBR_RS18065	0.39	-0.2
1,842,854	-		BBR_RS18065	0.39	+0.3
1,842,861	-		BBR_RS18065	0.39	-0.9
1,842,871	-		BBR_RS18065	0.40	+2.6
1,842,875	+		BBR_RS18065	0.41	-0.7
1,842,935	-		BBR_RS18065	0.46	-0.1
1,842,948	+		BBR_RS18065	0.47	-0.2
1,842,956	-		BBR_RS18065	0.48	-2.7
1,842,966	+		BBR_RS18065	0.49	-0.7
1,842,984	+		BBR_RS18065	0.51	-0.4
1,842,998	+		BBR_RS18065	0.52	-0.3
1,842,998	+		BBR_RS18065	0.52	-1.4
1,842,999	-		BBR_RS18065	0.52	+4.0
1,842,999	-		BBR_RS18065	0.52	-1.2
1,842,999	-		BBR_RS18065	0.52	-1.6
1,843,010	+		BBR_RS18065	0.53	+0.7
1,843,018	-		BBR_RS18065	0.54	-0.4
1,843,025	+		BBR_RS18065	0.54	+1.8
1,843,028	-		BBR_RS18065	0.55	-0.8
1,843,028	-		BBR_RS18065	0.55	+0.6
1,843,042	+		BBR_RS18065	0.56	+0.2
1,843,042	+		BBR_RS18065	0.56	+1.0
1,843,055	-		BBR_RS18065	0.57	-0.3
1,843,084	-		BBR_RS18065	0.60	-0.1
1,843,118	-		BBR_RS18065	0.63	+1.4
1,843,167	-		BBR_RS18065	0.67	-0.6
1,843,170	-		BBR_RS18065	0.68	-0.1
1,843,185	+		BBR_RS18065	0.69	+0.6
1,843,193	-		BBR_RS18065	0.70	+1.0
1,843,195	+		BBR_RS18065	0.70	-0.3
1,843,221	-		BBR_RS18065	0.72	-0.9
1,843,232	+		BBR_RS18065	0.73	-0.1
1,843,240	-		BBR_RS18065	0.74	-0.6
1,843,240	-		BBR_RS18065	0.74	+1.3
1,843,240	-		BBR_RS18065	0.74	+1.0
1,843,240	-		BBR_RS18065	0.74	+0.4
1,843,306	-		BBR_RS18065	0.80	-0.5
1,843,309	+		BBR_RS18065	0.81	-0.2
1,843,314	+		BBR_RS18065	0.81	+0.9
1,843,345	-		BBR_RS18065	0.84	-0.4
1,843,357	-		BBR_RS18065	0.85	+0.1
1,843,371	-		BBR_RS18065	0.86	+2.6
1,843,387	+		BBR_RS18065	0.88	+2.7
1,843,408	-		BBR_RS18065	0.90	+0.2
1,843,411	-		BBR_RS18065	0.90	+1.7
1,843,426	+				-0.6
1,843,429	-				-1.7
1,843,434	-				+1.7
1,843,449	+				-0.7
1,843,449	+				-1.6
1,843,481	+				+2.1
1,843,481	+				+0.4
1,843,488	+				+0.1
1,843,489	-				+0.2
1,843,491	-				-1.0
1,843,491	-				+0.3
1,843,523	+				-0.6
1,843,528	+				-0.5
1,843,531	-				+0.9
1,843,538	-				+2.2
1,843,552	-				+1.1
1,843,552	-				-0.5
1,843,585	+				+2.7
1,843,593	-				+6.4
1,843,598	-				-0.3
1,843,598	-				-0.4
1,843,625	+		BBR_RS18070	0.11	-2.5
1,843,625	-		BBR_RS18070	0.11	-0.9
1,843,680	+		BBR_RS18070	0.17	+0.1
1,843,680	+		BBR_RS18070	0.17	+0.3
1,843,713	+		BBR_RS18070	0.20	-0.1
1,843,721	-		BBR_RS18070	0.21	-0.6
1,843,726	-		BBR_RS18070	0.22	-0.2
1,843,726	-		BBR_RS18070	0.22	+1.0
1,843,729	+		BBR_RS18070	0.22	-0.4
1,843,737	-		BBR_RS18070	0.23	+2.8
1,843,737	-		BBR_RS18070	0.23	-0.3
1,843,752	+		BBR_RS18070	0.25	+0.6
1,843,760	-		BBR_RS18070	0.25	+1.2
1,843,760	-		BBR_RS18070	0.25	+1.3
1,843,774	+		BBR_RS18070	0.27	-0.4
1,843,775	+		BBR_RS18070	0.27	+1.5
1,843,789	-		BBR_RS18070	0.29	-0.9
1,843,807	+		BBR_RS18070	0.31	-0.1
1,843,807	+		BBR_RS18070	0.31	+2.7
1,843,813	-		BBR_RS18070	0.31	+0.4
1,843,852	+		BBR_RS18070	0.35	-0.2
1,843,852	+		BBR_RS18070	0.35	-0.9
1,843,860	-		BBR_RS18070	0.36	-0.2
1,843,869	+		BBR_RS18070	0.37	+0.6
1,843,883	+		BBR_RS18070	0.39	+2.9
1,843,885	+		BBR_RS18070	0.39	+0.8
1,843,903	-		BBR_RS18070	0.41	+0.1
1,843,928	+		BBR_RS18070	0.44	+1.0
1,843,928	+		BBR_RS18070	0.44	-1.6
1,843,928	+		BBR_RS18070	0.44	+1.8
1,843,928	+		BBR_RS18070	0.44	+0.8
1,843,928	+		BBR_RS18070	0.44	-1.8
1,843,928	+		BBR_RS18070	0.44	-0.8
1,843,928	+		BBR_RS18070	0.44	+1.5
1,843,936	-		BBR_RS18070	0.44	-0.5
1,843,936	-		BBR_RS18070	0.44	-0.3
1,843,936	-		BBR_RS18070	0.44	+0.9
1,843,936	-		BBR_RS18070	0.44	-1.7
1,843,936	-		BBR_RS18070	0.44	-0.1
1,843,936	-		BBR_RS18070	0.44	-0.5
1,843,967	-		BBR_RS18070	0.48	+0.0
1,843,967	-		BBR_RS18070	0.48	-0.2
1,843,977	+		BBR_RS18070	0.49	+0.3
1,843,996	+		BBR_RS18070	0.51	+0.3
1,843,996	+		BBR_RS18070	0.51	-0.3
1,844,004	-		BBR_RS18070	0.52	-1.9
1,844,004	-		BBR_RS18070	0.52	-1.1
1,844,024	+		BBR_RS18070	0.54	+1.2
1,844,059	+		BBR_RS18070	0.58	+1.3
1,844,059	+		BBR_RS18070	0.58	+1.8
1,844,067	-		BBR_RS18070	0.59	-0.3
1,844,069	+		BBR_RS18070	0.59	+0.8
1,844,069	+		BBR_RS18070	0.59	-1.7
1,844,069	+		BBR_RS18070	0.59	-0.6
1,844,069	+		BBR_RS18070	0.59	+1.8
1,844,069	+		BBR_RS18070	0.59	+0.5
1,844,077	-		BBR_RS18070	0.60	+0.8
1,844,084	+		BBR_RS18070	0.60	-0.7
1,844,127	-		BBR_RS18070	0.65	-0.1
1,844,147	+		BBR_RS18070	0.67	+0.2
1,844,155	-		BBR_RS18070	0.68	-0.7
1,844,161	-		BBR_RS18070	0.69	-0.2
1,844,226	-		BBR_RS18070	0.76	+0.0
1,844,226	-		BBR_RS18070	0.76	-0.7
1,844,226	-		BBR_RS18070	0.76	+0.4
1,844,241	+		BBR_RS18070	0.77	+0.5
1,844,241	+		BBR_RS18070	0.77	+0.7
1,844,256	+		BBR_RS18070	0.79	+0.1
1,844,259	-		BBR_RS18070	0.79	+0.4
1,844,264	-		BBR_RS18070	0.80	-0.8
1,844,280	-		BBR_RS18070	0.82	+0.5
1,844,295	+		BBR_RS18070	0.83	+0.2
1,844,295	+		BBR_RS18070	0.83	+1.2
1,844,295	-		BBR_RS18070	0.83	-1.1
1,844,297	+		BBR_RS18070	0.84	-0.4
1,844,297	+		BBR_RS18070	0.84	-0.2
1,844,303	-		BBR_RS18070	0.84	-1.4
1,844,325	+		BBR_RS18070	0.87	+1.2
1,844,338	-		BBR_RS18070	0.88	-0.8
1,844,350	+		BBR_RS18070	0.89	+0.1
1,844,350	+		BBR_RS18070	0.89	-0.0
1,844,363	+				+2.4
1,844,363	+				-0.9
1,844,366	-				-0.9
1,844,371	-				-0.2
1,844,371	-				+0.2
1,844,371	-				+1.2
1,844,376	-				-0.6
1,844,384	+				+0.7
1,844,419	-				-0.1
1,844,461	-				-0.4