Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17315

Experiment: Recovery broth with Ticarcillin 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 4e-04 mM
1,660,936	+		BBR_RS17310	0.25	-0.9
1,660,954	+		BBR_RS17310	0.27	-0.7
1,660,975	-		BBR_RS17310	0.29	-1.7
1,660,987	-		BBR_RS17310	0.30	+1.2
1,661,008	-		BBR_RS17310	0.33	+1.8
1,661,014	+		BBR_RS17310	0.33	+0.7
1,661,014	+		BBR_RS17310	0.33	-1.1
1,661,015	-		BBR_RS17310	0.33	+1.1
1,661,022	-		BBR_RS17310	0.34	-0.6
1,661,069	+		BBR_RS17310	0.39	-0.7
1,661,153	+		BBR_RS17310	0.47	+1.0
1,661,153	+		BBR_RS17310	0.47	+1.6
1,661,161	-		BBR_RS17310	0.48	-0.3
1,661,161	-		BBR_RS17310	0.48	+1.7
1,661,161	-		BBR_RS17310	0.48	-0.3
1,661,161	-		BBR_RS17310	0.48	+1.3
1,661,161	-		BBR_RS17310	0.48	-0.2
1,661,161	-		BBR_RS17310	0.48	+0.2
1,661,161	-		BBR_RS17310	0.48	+0.7
1,661,163	+		BBR_RS17310	0.48	+0.6
1,661,173	+		BBR_RS17310	0.49	+0.1
1,661,173	+		BBR_RS17310	0.49	-1.2
1,661,188	+		BBR_RS17310	0.51	+1.4
1,661,209	-		BBR_RS17310	0.53	+2.2
1,661,219	-		BBR_RS17310	0.54	-0.4
1,661,219	-		BBR_RS17310	0.54	+0.5
1,661,223	+		BBR_RS17310	0.54	-0.3
1,661,223	+		BBR_RS17310	0.54	-0.3
1,661,223	+		BBR_RS17310	0.54	+0.2
1,661,235	+		BBR_RS17310	0.56	+0.1
1,661,235	+		BBR_RS17310	0.56	-0.3
1,661,243	-		BBR_RS17310	0.56	+2.0
1,661,251	-		BBR_RS17310	0.57	+0.6
1,661,255	-		BBR_RS17310	0.58	+0.1
1,661,279	-		BBR_RS17310	0.60	+0.1
1,661,279	-		BBR_RS17310	0.60	-1.5
1,661,306	+		BBR_RS17310	0.63	-1.2
1,661,314	-		BBR_RS17310	0.64	-0.2
1,661,383	+		BBR_RS17310	0.71	+3.0
1,661,401	+		BBR_RS17310	0.72	-0.7
1,661,410	+		BBR_RS17310	0.73	+1.5
1,661,417	-		BBR_RS17310	0.74	+4.0
1,661,455	-		BBR_RS17310	0.78	+0.8
1,661,457	+		BBR_RS17310	0.78	-0.5
1,661,460	-		BBR_RS17310	0.78	+0.5
1,661,505	-		BBR_RS17310	0.83	+0.3
1,661,544	+		BBR_RS17310	0.87	-1.3
1,661,594	+				+0.7
1,661,722	+				+0.3
1,661,731	-				+0.4
1,661,731	-				+0.4
1,661,731	-				+1.5
1,661,746	+				-0.6
1,661,753	+				-1.8
1,661,753	+				-0.3
1,661,753	+				-1.0
1,661,753	+				-0.8
1,661,753	+				-1.3
1,661,753	+				+0.1
1,661,753	-				-0.7
1,661,761	-				-0.4
1,661,761	-				-0.2
1,661,761	-				-0.6
1,661,761	-				+0.2
1,661,761	-				+0.6
1,661,761	-				+0.5
1,661,785	+				+1.4
1,661,796	-				+2.4
1,661,796	-				+1.3
1,661,859	+				+1.6
1,661,876	-				-2.4
1,661,882	+				+1.5
1,661,929	-				+4.7
1,661,939	-				+1.4
1,661,972	-				+0.6
1,662,036	+				-0.9
1,662,038	+				-0.4
1,662,066	+				-1.4
1,662,080	-		BBR_RS17315	0.11	+0.5
1,662,208	+		BBR_RS17315	0.19	+1.2
1,662,245	+		BBR_RS17315	0.22	-0.5
1,662,253	-		BBR_RS17315	0.22	+0.8
1,662,283	-		BBR_RS17315	0.25	-1.1
1,662,312	+		BBR_RS17315	0.26	-0.1
1,662,323	+		BBR_RS17315	0.27	+2.9
1,662,368	+		BBR_RS17315	0.30	+0.1
1,662,376	-		BBR_RS17315	0.31	-0.9
1,662,411	+		BBR_RS17315	0.33	+0.3
1,662,499	-		BBR_RS17315	0.39	+0.4
1,662,499	-		BBR_RS17315	0.39	-0.9
1,662,532	-		BBR_RS17315	0.42	+0.7
1,662,558	+		BBR_RS17315	0.43	+3.4
1,662,574	+		BBR_RS17315	0.44	+0.1
1,662,574	+		BBR_RS17315	0.44	+0.7
1,662,594	-		BBR_RS17315	0.46	-1.7
1,662,729	+		BBR_RS17315	0.55	-0.8
1,662,735	-		BBR_RS17315	0.55	+0.8
1,662,735	-		BBR_RS17315	0.55	+0.4
1,662,770	+		BBR_RS17315	0.58	+3.4
1,662,813	+		BBR_RS17315	0.61	+0.1
1,662,820	+		BBR_RS17315	0.61	-0.6
1,662,820	+		BBR_RS17315	0.61	+0.2
1,662,880	+		BBR_RS17315	0.65	+0.8
1,662,890	+		BBR_RS17315	0.66	+0.3
1,662,897	+		BBR_RS17315	0.67	+5.7
1,662,903	-		BBR_RS17315	0.67	-1.0
1,662,910	-		BBR_RS17315	0.67	-0.6
1,662,991	+		BBR_RS17315	0.73	-0.3
1,662,997	+		BBR_RS17315	0.73	+0.5
1,663,021	-		BBR_RS17315	0.75	-1.4
1,663,021	-		BBR_RS17315	0.75	-0.7
1,663,028	+		BBR_RS17315	0.75	+0.6
1,663,041	-		BBR_RS17315	0.76	+1.1
1,663,073	+		BBR_RS17315	0.79	+1.3
1,663,081	-		BBR_RS17315	0.79	-0.3
1,663,081	-		BBR_RS17315	0.79	+0.0
1,663,088	-		BBR_RS17315	0.80	+0.9
1,663,115	+		BBR_RS17315	0.81	-0.1
1,663,126	+		BBR_RS17315	0.82	+1.3
1,663,168	+		BBR_RS17315	0.85	+0.1
1,663,168	+		BBR_RS17315	0.85	+0.9
1,663,197	+		BBR_RS17315	0.87	+0.3
1,663,197	+		BBR_RS17315	0.87	-0.0
1,663,197	+		BBR_RS17315	0.87	-0.7
1,663,197	+		BBR_RS17315	0.87	+1.2
1,663,224	+		BBR_RS17315	0.89	-0.0
1,663,232	-		BBR_RS17315	0.89	+3.3
1,663,255	-				+0.1
1,663,307	+				+2.3
1,663,360	-				+2.2
1,663,458	-		BBR_RS17320	0.15	+0.1
1,663,508	+		BBR_RS17320	0.26	+0.3
1,663,517	-		BBR_RS17320	0.28	+0.5
1,663,518	+		BBR_RS17320	0.28	+1.6
1,663,526	-		BBR_RS17320	0.29	+1.3
1,663,527	+		BBR_RS17320	0.30	-0.7
1,663,564	+		BBR_RS17320	0.38	-0.0
1,663,646	-		BBR_RS17320	0.55	-1.0
1,663,646	-		BBR_RS17320	0.55	-1.3
1,663,649	-		BBR_RS17320	0.56	+1.4
1,663,671	-		BBR_RS17320	0.61	-2.4
1,663,676	-		BBR_RS17320	0.62	-0.4
1,663,676	-		BBR_RS17320	0.62	-0.0
1,663,732	+		BBR_RS17320	0.74	+0.7
1,663,732	+		BBR_RS17320	0.74	-0.4
1,663,740	+		BBR_RS17320	0.75	+0.6
1,663,740	-		BBR_RS17320	0.75	-0.4
1,663,762	-		BBR_RS17320	0.80	-0.7
1,663,792	-		BBR_RS17320	0.87	-1.5
1,663,792	-		BBR_RS17320	0.87	-0.2
1,663,792	-		BBR_RS17320	0.87	+2.4
1,663,802	-		BBR_RS17320	0.89	-1.8
1,663,802	-		BBR_RS17320	0.89	-0.5
1,663,808	+				-0.7
1,663,833	-				-1.3
1,663,837	-				-0.7
1,663,864	+				+1.1
1,663,864	+				+0.7
1,663,894	-				-2.0
1,663,923	-				-0.4
1,663,941	-				+3.6
1,663,970	+				+1.5
1,663,973	-				-0.8
1,664,019	+				-0.8
1,664,020	-				+0.5
1,664,022	-				+0.8
1,664,057	-				+6.8
1,664,067	+				-0.2
1,664,136	+				-0.6
1,664,196	+		BBR_RS17330	0.12	-0.2
1,664,210	-		BBR_RS17330	0.13	-1.0
1,664,212	-		BBR_RS17330	0.13	-1.4
1,664,222	-		BBR_RS17330	0.14	+1.9
1,664,256	+		BBR_RS17330	0.17	+0.6
1,664,256	+		BBR_RS17330	0.17	+5.2
1,664,256	+		BBR_RS17330	0.17	+0.5
1,664,256	+		BBR_RS17330	0.17	-0.0
1,664,323	+		BBR_RS17330	0.21	-0.7
1,664,331	-		BBR_RS17330	0.22	+0.9
1,664,338	+		BBR_RS17330	0.22	-0.1