Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17120

Experiment: Recovery broth with Ticarcillin 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 4e-04 mM
1,617,785	+				+1.9
1,617,793	-				+5.7
1,617,793	-				-0.0
1,617,793	-				+0.7
1,617,793	-				+0.8
1,617,808	+				-1.4
1,617,826	+				+2.7
1,617,844	+				-0.2
1,617,867	+		BBR_RS17115	0.12	-0.3
1,617,888	+		BBR_RS17115	0.15	+0.1
1,617,954	-		BBR_RS17115	0.22	+0.8
1,617,955	+		BBR_RS17115	0.22	+0.3
1,617,984	+		BBR_RS17115	0.26	+1.0
1,618,039	-		BBR_RS17115	0.32	+0.7
1,618,058	-		BBR_RS17115	0.34	-0.0
1,618,069	-		BBR_RS17115	0.35	+0.5
1,618,076	-		BBR_RS17115	0.36	+0.1
1,618,088	+		BBR_RS17115	0.38	+1.0
1,618,111	-		BBR_RS17115	0.40	+0.8
1,618,149	+		BBR_RS17115	0.44	+0.3
1,618,157	-		BBR_RS17115	0.45	-1.5
1,618,175	+		BBR_RS17115	0.47	+0.7
1,618,175	+		BBR_RS17115	0.47	+0.5
1,618,181	+		BBR_RS17115	0.48	-0.4
1,618,181	+		BBR_RS17115	0.48	+0.8
1,618,189	-		BBR_RS17115	0.49	-0.9
1,618,244	+		BBR_RS17115	0.55	+0.4
1,618,261	+		BBR_RS17115	0.57	-1.1
1,618,312	+		BBR_RS17115	0.63	+0.2
1,618,383	+		BBR_RS17115	0.71	+0.0
1,618,410	+		BBR_RS17115	0.74	+1.5
1,618,418	-		BBR_RS17115	0.75	+1.3
1,618,428	+		BBR_RS17115	0.76	-0.0
1,618,471	-		BBR_RS17115	0.81	-1.6
1,618,489	-		BBR_RS17115	0.83	-0.6
1,618,492	-		BBR_RS17115	0.83	+0.2
1,618,578	+				-0.1
1,618,586	+				-2.0
1,618,647	+				+0.3
1,618,702	+				+0.8
1,618,771	-		BBR_RS17120	0.11	+3.1
1,618,792	+		BBR_RS17120	0.16	+0.6
1,618,826	+		BBR_RS17120	0.25	+1.4
1,618,859	-		BBR_RS17120	0.34	+0.5
1,618,878	+		BBR_RS17120	0.39	+0.2
1,618,888	+		BBR_RS17120	0.41	+4.7
1,618,890	+		BBR_RS17120	0.42	-0.9
1,618,919	-		BBR_RS17120	0.49	-1.6
1,618,999	-		BBR_RS17120	0.70	-0.6
1,619,008	+		BBR_RS17120	0.72	-0.9
1,619,008	+		BBR_RS17120	0.72	+0.0
1,619,034	+		BBR_RS17120	0.79	+1.3
1,619,124	+				+0.6
1,619,145	+				-0.4