Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16380

Experiment: Recovery broth with Ticarcillin 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 4e-04 mM
1,432,295	+		BBR_RS16375	0.83	-0.2
1,432,305	+		BBR_RS16375	0.83	+0.7
1,432,308	-		BBR_RS16375	0.84	-0.5
1,432,336	-		BBR_RS16375	0.84	+0.3
1,432,351	+		BBR_RS16375	0.85	-1.6
1,432,363	+		BBR_RS16375	0.85	-0.4
1,432,371	-		BBR_RS16375	0.86	-0.5
1,432,449	-		BBR_RS16375	0.88	-0.2
1,432,449	-		BBR_RS16375	0.88	+1.0
1,432,450	-		BBR_RS16375	0.88	+0.1
1,432,463	+		BBR_RS16375	0.89	-0.8
1,432,473	+		BBR_RS16375	0.89	+0.5
1,432,481	-		BBR_RS16375	0.89	-0.2
1,432,494	-		BBR_RS16375	0.90	+2.3
1,432,508	-				-0.4
1,432,570	+				-1.3
1,432,578	-				+2.5
1,432,581	-				-1.0
1,432,583	-				-0.5
1,432,583	-				+0.2
1,432,585	+				+0.5
1,432,589	+				+0.5
1,432,616	-				-1.8
1,432,616	-				+1.6
1,432,616	-				-1.2
1,432,667	-				+2.1
1,432,705	-				-1.3
1,432,708	+				-0.8
1,432,708	+				-2.4
1,432,716	-				-0.9
1,432,718	-				+1.6
1,432,722	+				-1.3
1,432,747	+				+0.3
1,432,832	+				-0.0
1,432,842	-				+0.3
1,432,859	+				+0.1
1,432,968	-				+1.5
1,433,042	+				-0.8
1,433,216	+				+1.3
1,433,223	+				+0.2
1,433,257	+				-0.0
1,433,257	+				+0.8
1,433,265	-				+0.7
1,433,276	+				-1.7
1,433,285	+				+3.8
1,433,322	-		BBR_RS16380	0.19	-1.7
1,433,327	+		BBR_RS16380	0.21	+0.3
1,433,366	-		BBR_RS16380	0.40	+2.0
1,433,374	+		BBR_RS16380	0.44	+1.3
1,433,376	-		BBR_RS16380	0.45	+0.8
1,433,382	-		BBR_RS16380	0.48	+4.0
1,433,382	-		BBR_RS16380	0.48	+0.9
1,433,382	-		BBR_RS16380	0.48	-0.8
1,433,462	-		BBR_RS16380	0.86	-0.4
1,433,521	+				-0.0
1,433,531	+				-0.7
1,433,568	+				-0.6
1,433,573	+				+1.3
1,433,581	-				-1.1
1,433,590	+				-0.8
1,433,660	-				+0.4
1,433,677	-				-0.1
1,433,679	-				+0.6
1,433,809	+				-0.0
1,433,816	+				+2.4
1,433,826	+				+1.7
1,433,826	+				-1.0
1,433,826	+				+0.8
1,433,829	-				+1.4
1,433,841	+				+1.4
1,433,841	+				+2.1
1,433,841	+				-0.1
1,433,850	+				+0.7
1,433,898	+		BBR_RS16385	0.30	+0.0
1,433,898	+		BBR_RS16385	0.30	+0.4
1,433,898	-		BBR_RS16385	0.30	-0.7
1,433,898	-		BBR_RS16385	0.30	-0.4
1,433,906	-		BBR_RS16385	0.33	-0.6
1,433,906	-		BBR_RS16385	0.33	-0.4
1,433,906	-		BBR_RS16385	0.33	-1.6
1,433,966	-		BBR_RS16385	0.59	+0.1
1,433,970	+		BBR_RS16385	0.61	+0.5
1,434,072	+				-0.2
1,434,072	+				-0.4
1,434,080	-				+0.3
1,434,109	-				-0.6
1,434,128	+				+1.5
1,434,130	+				+0.8
1,434,143	+				-1.5
1,434,143	+				-0.6
1,434,143	+				+0.7
1,434,151	-				-0.3
1,434,151	-				-1.2
1,434,151	-				-1.5
1,434,151	-				-1.4
1,434,151	-				+0.3
1,434,153	+				-1.2
1,434,200	+				+3.7
1,434,248	-		BBR_RS16390	0.11	-0.0
1,434,248	-		BBR_RS16390	0.11	-0.4
1,434,284	+		BBR_RS16390	0.15	+0.4
1,434,342	-		BBR_RS16390	0.21	-0.6
1,434,429	-		BBR_RS16390	0.31	+0.3