Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16170

Experiment: Recovery broth with Ticarcillin 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 4e-04 mM
1,375,867	-		BBR_RS16165	0.16	+1.1
1,375,869	+		BBR_RS16165	0.16	-0.6
1,375,869	+		BBR_RS16165	0.16	-0.9
1,375,869	+		BBR_RS16165	0.16	-0.0
1,375,884	-		BBR_RS16165	0.18	+0.4
1,375,907	-		BBR_RS16165	0.22	+2.4
1,375,917	-		BBR_RS16165	0.24	-1.0
1,375,975	-		BBR_RS16165	0.33	+2.8
1,375,980	-		BBR_RS16165	0.34	-1.2
1,376,002	-		BBR_RS16165	0.37	+0.3
1,376,061	+		BBR_RS16165	0.47	-0.2
1,376,069	-		BBR_RS16165	0.48	+1.1
1,376,137	-		BBR_RS16165	0.59	-0.1
1,376,166	-		BBR_RS16165	0.64	+0.6
1,376,289	-		BBR_RS16165	0.83	-0.1
1,376,331	-				+0.4
1,376,396	-				+1.1
1,376,410	+				+0.1
1,376,413	-				+1.1
1,376,486	+				+1.0
1,376,769	+		BBR_RS16170	0.72	-1.0
1,376,771	+		BBR_RS16170	0.73	-1.0
1,376,831	+				-0.3
1,376,839	-				-0.3
1,376,889	+				+2.0
1,376,925	+				-0.7
1,376,930	-				+1.3
1,376,945	+				+1.1
1,376,972	-				-0.1
1,377,054	-		BBR_RS16175	0.30	+0.2
1,377,061	-		BBR_RS16175	0.32	-1.0
1,377,061	-		BBR_RS16175	0.32	-0.4
1,377,085	-		BBR_RS16175	0.39	-1.2
1,377,174	-		BBR_RS16175	0.62	+2.5
1,377,181	-		BBR_RS16175	0.64	+1.1
1,377,207	-		BBR_RS16175	0.70	+0.6
1,377,248	+		BBR_RS16175	0.81	+1.8
1,377,287	+				-0.4
1,377,287	+				+1.6
1,377,287	+				+0.3
1,377,287	+				+1.2
1,377,287	+				-1.0
1,377,293	-				-1.0
1,377,295	-				-1.0
1,377,295	-				+0.9
1,377,370	+				+0.7
1,377,378	+				-1.3
1,377,386	-				-1.1
1,377,393	+				-1.8
1,377,401	-				+0.8
1,377,401	-				-1.4
1,377,411	-				+1.3
1,377,420	+				+2.5
1,377,522	+				-1.9
1,377,541	+				+0.1
1,377,551	+				-0.9
1,377,551	+				+0.5
1,377,557	-				+0.2
1,377,564	-				+1.1
1,377,587	-				-0.1
1,377,628	+				+1.0
1,377,664	+		BBR_RS16180	0.11	-0.3
1,377,706	-		BBR_RS16180	0.14	+0.8
1,377,719	+		BBR_RS16180	0.15	+2.1
1,377,809	-		BBR_RS16180	0.21	-1.7
1,377,823	+		BBR_RS16180	0.22	-0.5