Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16105

Experiment: Recovery broth with Ticarcillin 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 4e-04 mM
1,361,369	+		BBR_RS16095	0.66	+1.5
1,361,425	+		BBR_RS16095	0.73	+1.6
1,361,433	-		BBR_RS16095	0.74	+0.6
1,361,485	-		BBR_RS16095	0.81	+1.6
1,361,485	-		BBR_RS16095	0.81	-0.1
1,361,509	+		BBR_RS16095	0.84	-0.0
1,361,548	+		BBR_RS16095	0.89	-1.4
1,361,611	-				+0.1
1,361,788	+				-1.2
1,361,823	-				+0.2
1,361,840	+				+1.6
1,361,903	+				+1.7
1,361,910	-				-0.3
1,361,911	-				-0.4
1,361,927	-		BBR_RS16100	0.12	-1.0
1,361,944	+		BBR_RS16100	0.16	+0.4
1,361,954	+		BBR_RS16100	0.18	+1.2
1,361,962	-		BBR_RS16100	0.19	-0.4
1,362,019	-		BBR_RS16100	0.31	-0.7
1,362,029	-		BBR_RS16100	0.33	-0.9
1,362,044	+		BBR_RS16100	0.36	+2.9
1,362,131	+		BBR_RS16100	0.54	-0.3
1,362,139	-		BBR_RS16100	0.56	+0.2
1,362,216	-		BBR_RS16100	0.72	-1.1
1,362,217	-		BBR_RS16100	0.72	+1.2
1,362,281	+		BBR_RS16100	0.86	-0.3
1,362,306	+				+1.4
1,362,347	-				-0.1
1,362,496	-		BBR_RS16105	0.12	-0.4
1,362,496	-		BBR_RS16105	0.12	-0.4
1,362,504	-		BBR_RS16105	0.13	-1.3
1,362,504	-		BBR_RS16105	0.13	-0.8
1,362,520	+		BBR_RS16105	0.14	+0.1
1,362,544	+		BBR_RS16105	0.16	-1.2
1,362,565	+		BBR_RS16105	0.18	-0.6
1,362,739	+		BBR_RS16105	0.33	-0.4
1,362,745	-		BBR_RS16105	0.34	-1.8
1,362,771	-		BBR_RS16105	0.36	-0.4
1,362,800	-		BBR_RS16105	0.38	+1.3
1,362,805	-		BBR_RS16105	0.39	-1.9
1,362,805	-		BBR_RS16105	0.39	-0.2
1,362,805	-		BBR_RS16105	0.39	+1.2
1,362,839	+		BBR_RS16105	0.42	+0.5
1,363,106	+		BBR_RS16105	0.65	+0.5
1,363,114	-		BBR_RS16105	0.65	+0.2
1,363,114	-		BBR_RS16105	0.65	-0.6
1,363,114	-		BBR_RS16105	0.65	-1.0
1,363,153	+		BBR_RS16105	0.69	+1.3
1,363,436	-				-1.5
1,363,459	+				-0.3
1,363,524	-				+1.5