Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15875

Experiment: Recovery broth with Ticarcillin 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 4e-04 mM
1,323,739	+				+0.8
1,323,771	+				+1.6
1,323,806	+				+0.5
1,323,814	-				-0.3
1,323,831	-				+0.1
1,323,852	+				+2.1
1,323,860	-				-2.1
1,323,881	-				-1.5
1,323,911	+				+1.6
1,323,919	-				-0.6
1,323,967	-		BBR_RS15870	0.13	+0.6
1,323,979	-		BBR_RS15870	0.17	-0.2
1,323,989	+		BBR_RS15870	0.20	-0.6
1,323,997	-		BBR_RS15870	0.22	+2.2
1,323,997	-		BBR_RS15870	0.22	+0.6
1,324,029	+		BBR_RS15870	0.32	+0.6
1,324,159	+		BBR_RS15870	0.72	+1.3
1,324,205	-		BBR_RS15870	0.85	+1.1
1,324,247	+				+1.2
1,324,255	-				+0.7
1,324,269	+				+1.1
1,324,762	+		BBR_RS15875	0.12	+3.3
1,324,764	+		BBR_RS15875	0.13	+0.3
1,324,767	+		BBR_RS15875	0.13	-0.4
1,324,902	+		BBR_RS15875	0.30	+1.6
1,324,926	+		BBR_RS15875	0.33	-0.2
1,324,927	-		BBR_RS15875	0.33	+0.2
1,324,933	-		BBR_RS15875	0.34	+1.1
1,324,959	-		BBR_RS15875	0.37	-0.0
1,324,998	+		BBR_RS15875	0.42	+0.6
1,324,998	+		BBR_RS15875	0.42	+1.8
1,325,006	-		BBR_RS15875	0.43	+0.2
1,325,006	-		BBR_RS15875	0.43	+1.2
1,325,006	-		BBR_RS15875	0.43	+0.7
1,325,006	-		BBR_RS15875	0.43	-0.8
1,325,006	-		BBR_RS15875	0.43	+1.1
1,325,006	-		BBR_RS15875	0.43	+0.7
1,325,011	-		BBR_RS15875	0.43	+3.6
1,325,011	-		BBR_RS15875	0.43	-0.9
1,325,026	+		BBR_RS15875	0.45	+1.4
1,325,035	+		BBR_RS15875	0.46	+0.3
1,325,081	-		BBR_RS15875	0.52	-0.6
1,325,116	-		BBR_RS15875	0.56	-1.8
1,325,132	-		BBR_RS15875	0.58	-1.5
1,325,202	-		BBR_RS15875	0.67	+1.7
1,325,232	+		BBR_RS15875	0.71	+2.9
1,325,303	+		BBR_RS15875	0.79	+0.2
1,325,389	+				-0.3
1,325,395	+				-0.8
1,325,418	-				+0.4
1,325,579	+				+1.2
1,325,634	+				-0.9
1,325,720	-		BBR_RS15880	0.35	+0.9
1,325,737	+		BBR_RS15880	0.42	-0.1
1,325,791	+		BBR_RS15880	0.63	-0.6
1,325,804	-		BBR_RS15880	0.68	+0.5
1,325,823	+		BBR_RS15880	0.75	-0.3
1,325,998	+				+1.8
1,326,000	-				+2.5
1,326,000	-				-1.1
1,326,021	-				+0.8
1,326,034	+				+3.1
1,326,132	+				+0.1
1,326,172	-				-0.3
1,326,172	-				-1.9
1,326,204	-				+1.3
1,326,412	+				-0.1
1,326,435	+				+0.7
1,326,459	-				+0.8