Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15555

Experiment: Recovery broth with Ticarcillin 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Ticarcillin 4e-04 mM
1,261,940	+				+0.1
1,261,948	-				+1.3
1,261,987	+				+0.2
1,262,008	+				-0.5
1,262,024	+				-1.5
1,262,149	-		BBR_RS15550	0.21	+1.4
1,262,260	+		BBR_RS15550	0.33	-0.5
1,262,369	-		BBR_RS15550	0.45	+0.3
1,262,409	+		BBR_RS15550	0.49	-0.1
1,262,578	-		BBR_RS15550	0.67	-0.8
1,262,680	+		BBR_RS15550	0.77	-0.2
1,262,860	+				+0.5
1,262,875	-				+1.8
1,262,884	+				-0.3
1,262,892	-				-0.5
1,262,897	-				-0.2
1,262,902	-				+0.3
1,262,963	-				+1.2
1,263,007	-		BBR_RS15555	0.13	+0.6
1,263,135	-		BBR_RS15555	0.29	+0.7
1,263,140	-		BBR_RS15555	0.29	+0.6
1,263,187	+		BBR_RS15555	0.35	+0.3
1,263,195	-		BBR_RS15555	0.36	-1.9
1,263,241	+		BBR_RS15555	0.41	-2.4
1,263,515	+		BBR_RS15555	0.73	-0.4
1,263,653	-		BBR_RS15555	0.89	+0.2
1,263,663	-				+0.3
1,263,683	+				+5.3
1,263,891	+				+0.2
1,263,913	+				-1.2
1,263,941	+				-0.1
1,264,141	+		BBR_RS15560	0.16	+0.5
1,264,208	-		BBR_RS15560	0.21	+2.6
1,264,259	+		BBR_RS15560	0.24	-0.2
1,264,259	+		BBR_RS15560	0.24	-2.7
1,264,264	+		BBR_RS15560	0.24	+0.1
1,264,489	+		BBR_RS15560	0.39	-1.6
1,264,500	+		BBR_RS15560	0.40	+3.5
1,264,509	+		BBR_RS15560	0.41	-0.4
1,264,560	+		BBR_RS15560	0.44	+0.4
1,264,604	+		BBR_RS15560	0.47	+0.4